Rmu_sc0004340.1_g000024

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004340.1
OG0000234
Physical Location & Seq
Forward (+)
64838 .. 66001
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004340.1_g000024.1.cds

Sequence Viewer

Length: 1164 bp
atgagaagaaacaaatgcaagaagagtagtagtagtagtagtagtagtactattagtagtgttagttatatccctgaagaaatcttgatcaacatcctagcaagattacctgcaaagtcgctccttcggtttaggtgtgtatcccagtcatggcgtggtttgattggcagcccaagttttgttagtaaacatcttaataggaatgttacaaaactttcgcatacctatctaattgccctccagcgcttgagagataagccagcactttgccactcgctattttctactgaaacatttgaggagtgtttgaagttgagacatcccttgtggactgaggaacagtttaggatatatggttcaagtaatgggctggtttgtatttcggatcaagtactgcggccgagtagtcctatatgcatatggaatccatgtattaggaaatttaggactcttccacaatcaatattcaaaccacattattccagttatgatatctccctctcatttgggttccacccggagcttaatgactacagagtggtaacaatgggttggtatgttcgatctatcataaaagtgcaggtctatagtcttagtactggctcttggaagatgattgaagtaattcctccttggttaaagttcaatccagactggtgtcgaggatgcgcatttttcaatggagtggcatactggctttttacaaagtcaaaaaagtttaggtttgtgtcatttgatacggatagtgaagaatttgaagaattaatggtaccagatactatttccaccaagggcttcacatatgttggagtctacaatggcttggtttgccttttttattcctatcttgaaggtcctgattgccagaaaccacaaaaatatatggacatatgggttctgaaagaacagtcttttaccaagttgcacactgcagttttactacccggaagagactatttgccattggggtttagtatccagaacgaactcattgcgaaggacaaaaagcatactaaaggtgatgaaggagatacgggccagatggttttatatgatctcgaaatgaagctgataaagagaacagggattagcttggcgcaggatagtcattacaaaacttcagcaggtacttacattgaaagtttggttctactcgatcgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

387

Amino Acids

44.58

Weight (kDa)

9.14

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 670
Acc36I ACCTGC 3 cut(s) 118, 571, 1115
Acc65I GGTACC 1 cut(s) 769
AccB1I GGYRCC 1 cut(s) 769
AccI GTMKAC 1 cut(s) 813
AciI CCGC 1 cut(s) 397
AclWI GGATC 1 cut(s) 393
AcoI YGGCCR 1 cut(s) 398
AcsI RAATTY 2 cut(s) 440, 752
AcuI CTGAAG 2 cut(s) 96, 1104
AfaI GTAC 5 cut(s) 49, 393, 598, 771, 1129
AfeI AGCGCT 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 9 cut(s) 310, 360, 469, 620, 646, 679, 758, 851, 1139
AloI GAACNNNNNNTCC 2 cut(s) 340, 372
AluBI AGCT 3 cut(s) 523, 1069, 1092
AluI AGCT 3 cut(s) 523, 1069, 1092
Alw26I GTCTC 2 cut(s) 310, 945
AlwI GGATC 1 cut(s) 393
Aor51HI AGCGCT 1 cut(s) 245
AoxI GGCC 2 cut(s) 398, 1036
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 2 cut(s) 440, 752
AseI ATTAAT 1 cut(s) 764
Asp700I GAANNNNTTC 1 cut(s) 624
Asp718I GGTACC 1 cut(s) 769
AspLEI GCGC 3 cut(s) 246, 671, 1099
AspS9I GGNCC 2 cut(s) 854, 1036
AsuC2I CCSGG 2 cut(s) 518, 945
AsuHPI GGTGA 1 cut(s) 1031
AvaII GGWCC 1 cut(s) 854
BanI GGYRCC 1 cut(s) 769
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 1036
BcgI CGANNNNNNTGC 2 cut(s) 974, 1008
BciVI GTATCC 2 cut(s) 151, 986
BclI TGATCA 1 cut(s) 87
BcnI CCSGG 2 cut(s) 518, 945
BcoDI GTCTC 2 cut(s) 310, 945
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 3 cut(s) 532, 586, 930
BfoI RGCGCY 1 cut(s) 247
BfuAI ACCTGC 3 cut(s) 118, 571, 1115
BfuI GTATCC 2 cut(s) 151, 986
BisI GCNGC 2 cut(s) 169, 398
BlsI GCNGC 2 cut(s) 170, 399
BmcAI AGTACT 3 cut(s) 49, 393, 598
Bme1390I CCNGG 2 cut(s) 518, 945
Bme18I GGWCC 1 cut(s) 854
BmgT120I GGNCC 2 cut(s) 854, 1036
BmiI GGNNCC 2 cut(s) 512, 771
BmrFI CCNGG 2 cut(s) 518, 945
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 1 cut(s) 656
BmuI ACTGGG 1 cut(s) 139
BoxI GACNNNNGTC 1 cut(s) 657
BpmI CTGGAG 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 2 cut(s) 518, 945
BsaBI GATNNNNATC 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 632, 789
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse1I ACTGG 5 cut(s) 145, 483, 604, 659, 698
Bse3DI GCAATG 1 cut(s) 990
Bse8I GATNNNNATC 1 cut(s) 92
BseDI CCNNGG 2 cut(s) 632, 789
BseGI GGATG 3 cut(s) 93, 319, 671
BseJI GATNNNNATC 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMI GCAATG 1 cut(s) 990
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 5 cut(s) 145, 483, 604, 659, 698
BseRI GAGGAG 1 cut(s) 314
BseX3I CGGCCG 1 cut(s) 398
BseXI GCAGC 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 599
Bsh1285I CGRYCG 2 cut(s) 401, 1159
BshFI GGCC 2 cut(s) 400, 1038
BshNI GGYRCC 1 cut(s) 769
BsiEI CGRYCG 2 cut(s) 401, 1159
BsiSI CCGG 2 cut(s) 518, 945
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 2 cut(s) 310, 945
BsnI GGCC 2 cut(s) 400, 1038
Bsp143I GATC 5 cut(s) 87, 385, 563, 1054, 1156
BspACI CCGC 1 cut(s) 397
BspANI GGCC 2 cut(s) 400, 1038
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 512, 771
BspMAI CTGCAG 1 cut(s) 934
BspMI ACCTGC 3 cut(s) 118, 571, 1115
BspPI GGATC 1 cut(s) 393
BspT107I GGYRCC 1 cut(s) 769
BsrDI GCAATG 1 cut(s) 990
BsrI ACTGG 5 cut(s) 145, 483, 604, 659, 698
BssECI CCNNGG 2 cut(s) 632, 789
BssMI GATC 5 cut(s) 87, 385, 563, 1054, 1156
BssT1I CCWWGG 2 cut(s) 632, 789
Bst4CI ACNGT 2 cut(s) 342, 909
Bst6I CTCTTC 3 cut(s) 17, 456, 943
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 2 cut(s) 333, 593
BstF5I GGATG 3 cut(s) 93, 319, 671
BstH2I RGCGCY 1 cut(s) 247
BstHHI GCGC 3 cut(s) 246, 671, 1099
BstKTI GATC 5 cut(s) 90, 388, 566, 1057, 1159
BstMAI GTCTC 2 cut(s) 310, 945
BstMBI GATC 5 cut(s) 87, 385, 563, 1054, 1156
BstMCI CGRYCG 2 cut(s) 401, 1159
BstMWI GCNNNNNNNGC 1 cut(s) 828
BstPAI GACNNNNGTC 1 cut(s) 657
BstSCI CCNGG 2 cut(s) 516, 943
BstSFI CTRYAG 3 cut(s) 532, 586, 930
BstV1I GCAGC 1 cut(s) 180
BstZI CGGCCG 1 cut(s) 398
BsuI GTATCC 2 cut(s) 151, 986
BsuRI GGCC 2 cut(s) 400, 1038
BtsCI GGATG 3 cut(s) 93, 319, 671
BtsI GCAGTG 1 cut(s) 927
BtsIMutI CAGTG 1 cut(s) 927
BveI ACCTGC 3 cut(s) 118, 571, 1115
Cac8I GCNNGC 1 cut(s) 261
CfoI GCGC 3 cut(s) 246, 671, 1099
Cfr13I GGNCC 2 cut(s) 854, 1036
Csp6I GTAC 5 cut(s) 48, 392, 597, 770, 1128
CviAII CATG 2 cut(s) 150, 429
CviQI GTAC 5 cut(s) 48, 392, 597, 770, 1128
DdeI CTNAG 2 cut(s) 333, 593
DpnI GATC 5 cut(s) 89, 387, 565, 1056, 1158
DpnII GATC 5 cut(s) 87, 385, 563, 1054, 1156
EaeI YGGCCR 1 cut(s) 398
EagI CGGCCG 1 cut(s) 398
Eam1104I CTCTTC 3 cut(s) 17, 456, 943
EarI CTCTTC 3 cut(s) 17, 456, 943
EclXI CGGCCG 1 cut(s) 398
Eco130I CCWWGG 2 cut(s) 632, 789
Eco32I GATATC 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 854
Eco47III AGCGCT 1 cut(s) 245
Eco52I CGGCCG 1 cut(s) 398
Eco57I CTGAAG 2 cut(s) 96, 1104
EcoO109I RGGNCCY 1 cut(s) 854
EcoRV GATATC 1 cut(s) 493
EcoT14I CCWWGG 2 cut(s) 632, 789
EcoT22I ATGCAT 1 cut(s) 419
ErhI CCWWGG 2 cut(s) 632, 789
FaeI CATG 2 cut(s) 153, 432
FatI CATG 2 cut(s) 149, 428
FauNDI CATATG 3 cut(s) 419, 802, 890
FbaI TGATCA 1 cut(s) 87
FblI GTMKAC 1 cut(s) 813
Fnu4HI GCNGC 2 cut(s) 169, 398
FokI GGATG 3 cut(s) 80, 306, 678
Fsp4HI GCNGC 2 cut(s) 169, 398
FspAI RTGCGCAY 1 cut(s) 670
FspBI CTAG 1 cut(s) 98
FspI TGCGCA 1 cut(s) 670
GlaI GCGC 3 cut(s) 245, 670, 1098
GluI GCNGC 2 cut(s) 169, 398
GsuI CTGGAG 1 cut(s) 224
HaeII RGCGCY 1 cut(s) 247
HaeIII GGCC 2 cut(s) 400, 1038
HapII CCGG 2 cut(s) 518, 945
HhaI GCGC 3 cut(s) 246, 671, 1099
Hin1II CATG 2 cut(s) 153, 432
Hin6I GCGC 3 cut(s) 244, 669, 1097
HinP1I GCGC 3 cut(s) 244, 669, 1097
HinfI GANTC 3 cut(s) 424, 448, 810
HpaII CCGG 2 cut(s) 518, 945
HphI GGTGA 1 cut(s) 1031
Hpy166II GTNNAC 3 cut(s) 188, 330, 814
Hpy188I TCNGA 2 cut(s) 385, 900
Hpy188III TCNNGA 6 cut(s) 85, 650, 848, 857, 979, 1058
Hpy8I GTNNAC 3 cut(s) 188, 330, 814
HpyAV CCTTC 4 cut(s) 134, 845, 991, 1019
HpyCH4III ACNGT 2 cut(s) 342, 909
HpyCH4V TGCA 6 cut(s) 18, 113, 417, 580, 925, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 828
HpyF3I CTNAG 2 cut(s) 333, 593
Hsp92II CATG 2 cut(s) 153, 432
HspAI GCGC 3 cut(s) 244, 669, 1097
KpnI GGTACC 1 cut(s) 773
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 5 cut(s) 87, 385, 563, 1054, 1156
LmnI GCTCC 2 cut(s) 126, 520
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 1 cut(s) 656
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 2 cut(s) 205, 541
MalI GATC 5 cut(s) 89, 387, 565, 1056, 1158
MboI GATC 5 cut(s) 87, 385, 563, 1054, 1156
MboII GAAGA 8 cut(s) 18, 34, 89, 443, 622, 761, 770, 960
MluCI AATT 5 cut(s) 231, 440, 624, 752, 761
MlyI GAGTC 2 cut(s) 442, 819
MmeI TCCRAC 1 cut(s) 787
MnlI CCTC 6 cut(s) 248, 292, 328, 509, 639, 656
Mph1103I ATGCAT 1 cut(s) 419
MroXI GAANNNNTTC 1 cut(s) 624
MseI TTAA 4 cut(s) 195, 525, 638, 764
MslI CAYNNNNRTG 1 cut(s) 575
MspI CCGG 2 cut(s) 518, 945
MspR9I CCNGG 2 cut(s) 518, 945
MwoI GCNNNNNNNGC 1 cut(s) 828
NciI CCSGG 2 cut(s) 518, 945
NdeI CATATG 3 cut(s) 419, 802, 890
NdeII GATC 5 cut(s) 87, 385, 563, 1054, 1156
NlaIII CATG 2 cut(s) 153, 432
NlaIV GGNNCC 2 cut(s) 512, 771
NmeAIII GCCGAG 1 cut(s) 426
NsbI TGCGCA 1 cut(s) 670
NsiI ATGCAT 1 cut(s) 419
PdmI GAANNNNTTC 1 cut(s) 624
PfeI GAWTC 1 cut(s) 424
PkrI GCNGC 2 cut(s) 170, 399
Ple19I CGATCG 1 cut(s) 1159
PleI GAGTC 2 cut(s) 442, 818
PpsI GAGTC 2 cut(s) 442, 818
PpuMI RGGWCCY 1 cut(s) 854
PshAI GACNNNNGTC 1 cut(s) 657
PshBI ATTAAT 1 cut(s) 764
Psp5II RGGWCCY 1 cut(s) 854
PspN4I GGNNCC 2 cut(s) 512, 771
PspPI GGNCC 2 cut(s) 854, 1036
PspPPI RGGWCCY 1 cut(s) 854
PstI CTGCAG 1 cut(s) 934
PvuI CGATCG 1 cut(s) 1159
RsaI GTAC 5 cut(s) 49, 393, 598, 771, 1129
RsaNI GTAC 5 cut(s) 48, 392, 597, 770, 1128
RseI CAYNNNNRTG 1 cut(s) 575
SaqAI TTAA 4 cut(s) 195, 525, 638, 764
SatI GCNGC 2 cut(s) 169, 398
Sau3AI GATC 5 cut(s) 87, 385, 563, 1054, 1156
Sau96I GGNCC 2 cut(s) 854, 1036
ScaI AGTACT 3 cut(s) 49, 393, 598
SchI GAGTC 2 cut(s) 442, 819
ScrFI CCNGG 2 cut(s) 518, 945
SfaNI GCATC 1 cut(s) 656
SfcI CTRYAG 3 cut(s) 532, 586, 930
SinI GGWCC 1 cut(s) 854
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 5 cut(s) 231, 440, 624, 752, 761
SsiI CCGC 1 cut(s) 397
SspI AATATT 1 cut(s) 465
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 2 cut(s) 516, 943
StyI CCWWGG 2 cut(s) 632, 789
TaaI ACNGT 2 cut(s) 342, 909
TaqI TCGA 4 cut(s) 562, 661, 1059, 1155
TasI AATT 5 cut(s) 231, 440, 624, 752, 761
TatI WGTACW 3 cut(s) 47, 391, 596
TauI GCSGC 1 cut(s) 400
TfiI GAWTC 1 cut(s) 424
Tru1I TTAA 4 cut(s) 195, 525, 638, 764
Tru9I TTAA 4 cut(s) 195, 525, 638, 764
TscAI CASTG 1 cut(s) 934
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 2 cut(s) 1038, 1079
TspGWI ACGGA 1 cut(s) 755
TspRI CASTG 1 cut(s) 934
VpaK11BI GGWCC 1 cut(s) 854
VspI ATTAAT 1 cut(s) 764
XapI RAATTY 2 cut(s) 440, 752
XcmI CCANNNNNNNNNTGG 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 813
XmnI GAANNNNTTC 1 cut(s) 624
XspI CTAG 1 cut(s) 98
ZrmI AGTACT 3 cut(s) 49, 393, 598
Zsp2I ATGCAT 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.