Rh1DG188800

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000234
Physical Location & Seq
Forward (+)
37774921 .. 37775634
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG188800.1

Sequence Viewer

Length: 714 bp
ATGGAATCCATCGAACAGAAAAATCAAGAGACTCCACAAGGTCTTTACCAAAATGTGGGTATTAATGTCAGTCTCGGGTTTGGATTTCACCGTCAGAAAAACGACTATAAAGTTGTGAAGATTGTACACGGGGAAATTATGTACAAAGTTGAGGTCTACTCCCTTAGATTGAATTCATGGAGAGAACTTGGTGCAGTTCTCCCCATTTGGTCCTACTCTACATACCTAAACAAATCTGCAATACATGTCAATGGAGTTGTGTACTGGATGGTAAAGGAGAAAAACTCTGCAAGATCTTTCATACTTTCTTTTGATATGGACAATGAGGTTTTCCAAAAGATGGAACTCCCTGAGAAACTAGTCGGAGGGATTGGTTCTGTTAGTATCCAAGTGTTTGAGAAATCCCTTTCTTTGATACACTTGAGAGAAGATGAGGATAATCTTGTAAGGCATGTTTCTTACTGTGACATCTGGGTTATGGGACTGGAAACATGGAAAATGATTCGCACGATTCTTCTACCGCAAGTGAGACTTTATCCAGCATATGGACGTATGGCATGGCCATTGAGCTTTACAACAGATGGAGTTTATATTGTAAGGCTGGATGAAAAAGAATTCCAAACTTTGGTTTTATATGATCCTATATCGCAAGAAGCTGAGGCACTGGCGGACCCAGGTAGGGGCAAGAGGGGGCTGGTGCCCCCACTGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

237

Amino Acids

27.35

Weight (kDa)

6.54

Isoelectric Point (pI)

33.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 23 - 160 1.5e-15 F-box associated beta propeller domain
FBA_3 PF08268 24 - 191 3.5e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 697
AccB7I CCANNNNNTGG 4 cut(s) 55, 340, 545, 625
AccI GTMKAC 1 cut(s) 156
AciI CCGC 2 cut(s) 521, 668
AclWI GGATC 1 cut(s) 632
AcoI YGGCCR 1 cut(s) 560
AcsI RAATTY 2 cut(s) 172, 614
AfaI GTAC 3 cut(s) 126, 143, 263
AfiI CCNNNNNNNGG 6 cut(s) 55, 340, 545, 625, 679, 680
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 1 cut(s) 172
AhlI ACTAGT 1 cut(s) 358
AjnI CCWGG 1 cut(s) 673
AluBI AGCT 2 cut(s) 570, 656
AluI AGCT 2 cut(s) 570, 656
Alw26I GTCTC 3 cut(s) 23, 77, 523
AlwI GGATC 1 cut(s) 632
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 1 cut(s) 560
ApoI RAATTY 2 cut(s) 172, 614
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AseI ATTAAT 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 210, 670
AsuHPI GGTGA 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 2 cut(s) 210, 670
BaeGI GKGCMC 1 cut(s) 702
BalI TGGCCA 1 cut(s) 562
BanI GGYRCC 1 cut(s) 697
BbvCI CCTCAGC 1 cut(s) 657
BccI CCATC 4 cut(s) 17, 262, 334, 575
BciT130I CCWGG 1 cut(s) 675
BciVI GTATCC 1 cut(s) 395
BcoDI GTCTC 3 cut(s) 23, 77, 523
BcuI ACTAGT 1 cut(s) 358
BfaI CTAG 1 cut(s) 359
BfuI GTATCC 1 cut(s) 395
BglII AGATCT 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 675
Bme18I GGWCC 2 cut(s) 210, 670
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 2 cut(s) 210, 670
BmiI GGNNCC 2 cut(s) 672, 699
BmrFI CCNGG 1 cut(s) 675
BplI GAGNNNNNCTC 4 cut(s) 143, 175, 269, 301
Bpu10I CCTNAGC 1 cut(s) 657
BpuEI CTTGAG 1 cut(s) 442
BsaJI CCNNGG 1 cut(s) 673
Bsc4I CCNNNNNNNGG 6 cut(s) 55, 340, 545, 625, 679, 680
Bse1I ACTGG 3 cut(s) 269, 489, 669
BseBI CCWGG 1 cut(s) 675
BseDI CCNNGG 1 cut(s) 673
BseGI GGATG 2 cut(s) 273, 610
BseLI CCNNNNNNNGG 6 cut(s) 55, 340, 545, 625, 679, 680
BseMII CTCAG 2 cut(s) 342, 648
BseNI ACTGG 3 cut(s) 269, 489, 669
BseSI GKGCMC 1 cut(s) 702
BsgI GTGCAG 1 cut(s) 213
BshFI GGCC 1 cut(s) 562
BshNI GGYRCC 1 cut(s) 697
BsiHKCI CYCGRG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 6 cut(s) 55, 340, 545, 625, 679, 680
BsmAI GTCTC 3 cut(s) 23, 77, 523
BsmFI GGGAC 1 cut(s) 495
BsnI GGCC 1 cut(s) 562
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 702
Bsp1407I TGTACA 2 cut(s) 124, 141
Bsp143I GATC 2 cut(s) 293, 637
BspACI CCGC 2 cut(s) 521, 668
BspANI GGCC 1 cut(s) 562
BspCNI CTCAG 2 cut(s) 343, 649
BspLI GGNNCC 2 cut(s) 672, 699
BspPI GGATC 1 cut(s) 632
BspT107I GGYRCC 1 cut(s) 697
BsrGI TGTACA 2 cut(s) 124, 141
BsrI ACTGG 3 cut(s) 269, 489, 669
BssECI CCNNGG 1 cut(s) 673
BssMI GATC 2 cut(s) 293, 637
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 2 cut(s) 92, 464
BstAUI TGTACA 2 cut(s) 124, 141
BstDEI CTNAG 3 cut(s) 164, 351, 657
BstF5I GGATG 2 cut(s) 273, 610
BstKTI GATC 2 cut(s) 296, 640
BstMAI GTCTC 3 cut(s) 23, 77, 523
BstMBI GATC 2 cut(s) 293, 637
BstNI CCWGG 1 cut(s) 675
BstNSI RCATGY 2 cut(s) 248, 455
BstSCI CCNGG 1 cut(s) 673
BstSLI GKGCMC 1 cut(s) 702
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BsuI GTATCC 1 cut(s) 395
BsuRI GGCC 1 cut(s) 562
BtsCI GGATG 2 cut(s) 273, 610
BtsIMutI CAGTG 2 cut(s) 662, 704
Cfr13I GGNCC 2 cut(s) 210, 670
Csp6I GTAC 3 cut(s) 125, 142, 262
CviAII CATG 5 cut(s) 177, 245, 452, 492, 558
CviJI RGCY 5 cut(s) 562, 570, 601, 656, 694
CviKI_1 RGCY 5 cut(s) 562, 570, 601, 656, 694
CviQI GTAC 3 cut(s) 125, 142, 262
DdeI CTNAG 3 cut(s) 164, 351, 657
DpnI GATC 2 cut(s) 295, 639
DpnII GATC 2 cut(s) 293, 637
EaeI YGGCCR 1 cut(s) 560
EciI GGCGGA 1 cut(s) 683
Eco47I GGWCC 2 cut(s) 210, 670
Eco88I CYCGRG 1 cut(s) 74
EcoRI GAATTC 2 cut(s) 172, 614
EcoRII CCWGG 1 cut(s) 673
FaeI CATG 5 cut(s) 180, 248, 455, 495, 561
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 1 cut(s) 495
FatI CATG 5 cut(s) 176, 244, 451, 491, 557
FauNDI CATATG 1 cut(s) 544
FblI GTMKAC 1 cut(s) 156
FokI GGATG 2 cut(s) 280, 617
FspBI CTAG 1 cut(s) 359
HaeIII GGCC 1 cut(s) 562
Hin1II CATG 5 cut(s) 180, 248, 455, 495, 561
HinfI GANTC 4 cut(s) 5, 31, 502, 511
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 3 cut(s) 127, 157, 262
Hpy188I TCNGA 2 cut(s) 96, 365
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 3 cut(s) 127, 157, 262
HpyCH4III ACNGT 2 cut(s) 92, 464
HpyCH4IV ACGT 1 cut(s) 550
HpyCH4V TGCA 3 cut(s) 194, 239, 290
HpyF3I CTNAG 3 cut(s) 164, 351, 657
HpySE526I ACGT 1 cut(s) 550
Hsp92II CATG 5 cut(s) 180, 248, 455, 495, 561
Kzo9I GATC 2 cut(s) 293, 637
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 550
MaeIII GTNAC 1 cut(s) 464
MalI GATC 2 cut(s) 295, 639
MboI GATC 2 cut(s) 293, 637
MboII GAAGA 3 cut(s) 130, 440, 506
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 1 cut(s) 702
MlsI TGGCCA 1 cut(s) 562
MluCI AATT 3 cut(s) 135, 172, 614
MluNI TGGCCA 1 cut(s) 562
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 6 cut(s) 145, 319, 359, 427, 652, 681
Mox20I TGGCCA 1 cut(s) 562
MscI TGGCCA 1 cut(s) 562
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 562
MspR9I CCNGG 1 cut(s) 675
MvaI CCWGG 1 cut(s) 675
NdeI CATATG 1 cut(s) 544
NdeII GATC 2 cut(s) 293, 637
NlaIII CATG 5 cut(s) 180, 248, 455, 495, 561
NlaIV GGNNCC 2 cut(s) 672, 699
NmuCI GTSAC 1 cut(s) 464
NspI RCATGY 2 cut(s) 248, 455
PciI ACATGT 1 cut(s) 244
PfeI GAWTC 3 cut(s) 5, 502, 511
PflMI CCANNNNNTGG 4 cut(s) 55, 340, 545, 625
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PscI ACATGT 1 cut(s) 244
PshBI ATTAAT 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 673
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 2 cut(s) 672, 699
PspPI GGNCC 2 cut(s) 210, 670
PsuI RGATCY 1 cut(s) 293
RsaI GTAC 3 cut(s) 126, 143, 263
RsaNI GTAC 3 cut(s) 125, 142, 262
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 63
Sau3AI GATC 2 cut(s) 293, 637
Sau96I GGNCC 2 cut(s) 210, 670
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 675
SduI GDGCHC 1 cut(s) 702
SetI ASST 8 cut(s) 43, 156, 228, 330, 553, 572, 658, 679
SinI GGWCC 2 cut(s) 210, 670
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
SpeI ACTAGT 1 cut(s) 358
Sse9I AATT 3 cut(s) 135, 172, 614
SsiI CCGC 2 cut(s) 521, 668
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 673
TaaI ACNGT 2 cut(s) 92, 464
TaiI ACGT 1 cut(s) 553
TaqI TCGA 1 cut(s) 12
TasI AATT 3 cut(s) 135, 172, 614
TatI WGTACW 3 cut(s) 124, 141, 261
TfiI GAWTC 3 cut(s) 5, 502, 511
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 669, 711
TseFI GTSAC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 3 cut(s) 165, 289, 621
TspRI CASTG 2 cut(s) 669, 711
Van91I CCANNNNNTGG 4 cut(s) 55, 340, 545, 625
VpaK11BI GGWCC 2 cut(s) 210, 670
VspI ATTAAT 1 cut(s) 63
XapI RAATTY 2 cut(s) 172, 614
XceI RCATGY 2 cut(s) 248, 455
XmiI GTMKAC 1 cut(s) 156
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.