Prupe.3G013300_v2.0.a1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000234
Physical Location & Seq
Forward (+)
943551 .. 945493
1943 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G013300.1

Sequence Viewer

Length: 1128 bp
ATGTTTAACCTCGAGTATCAAAGAAAGAGAAGAAGAGACGCACAAGTGAGCAAGATAGATGACTTTCCCCAAGAGATCTTGTTTGAAATCTTTACAAGATTGAGTATGAAATCACTTTTGCGGTGCAGATGTGTTTGCAAATCTTGGAAGGGTTTAATTAGCAACCCTGATTTCATGAACGCCCATCTCAAAAGAAATGTCTTGAAAAATGCATGTGATCATCTAGTTATCCACACTGGGTATGATGTAAGTGGCTTCTCAGTCTATGATGCTGAAGAATTTACAAAGCGTTTTGATCTAGAGCTTCCTAGGCCCAAACATGTCTCATATGCAGTTTATGGTTCTTGCAATGGGGTGCTTTGCATCTCCGCTACTTGGCGTGTGAATTTGGCAAGTCCTATATATCTGTTGAATCCATCAATCAGAGTATTCAAAAAACTTCCCGATTGCCACATCCTGCAAACTGCCCATTTTGTTACTCTTGGGTTTGGGTTTCATCAGAGGGGGGACGACTATAAGGTTGTGAGGGTTGTGAGGTTTCCACGCAAGAAAGATTTCTTTGCAGTTGAGGTTTACAGCCTTAGATTGGATACCTGGAGAAGAATTACTGCAACTCCGCCTGTTTCACAACAAGCCCGTTTTCCTCAACCCAAATGTTTATTCTTCAATGGATTTTTGTATTGGATTACAGTGGAGCCTTCTCAACATTGCACTTCCATTGTTTCCTTTGATCTGGACAGTGAGGTTTTTCAAAAGATTATGCTTCCAGATATATTGTTCGGAGTGGCGTCCGTACCTACTGTTCAAGTGTTTGAAGAATCGCTTTCTTTGTTCCATCAAAGAAAAGATGACAATGTTTGGTACTGTGACATATGGGTTGTGGAAGCAGATATTTGGACAATGAACCGCACGATTCTTCTTCCAAGATGTGAATCTGTAGCATGGCCATTGGGGATTAGAACAGATAACAAATTTCATTTGGTTAGGCATGTTCGAAATATGCAACGTGACCCAATTTTGGTTTTATGTGATCCTGTGTTGTGGAGAGCTAAGGATACCGGAATCAGCTTGAGTTATCACTCTCAGTTTGTCGATGCTTATAGGGAGAGTCTAATTTTACTAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

376

Amino Acids

43.88

Weight (kDa)

8.93

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 121, 369, 617, 907
AclWI GGATC 1 cut(s) 1025
AcoI YGGCCR 1 cut(s) 944
AcsI RAATTY 3 cut(s) 278, 385, 971
AcuI CTGAAG 1 cut(s) 294
AcyI GRCGYC 1 cut(s) 788
AfaI GTAC 2 cut(s) 795, 863
AfiI CCNNNNNNNGG 3 cut(s) 375, 586, 1018
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 8 cut(s) 86, 205, 412, 433, 667, 752, 806, 815
AjnI CCWGG 1 cut(s) 593
AjuI GAANNNNNNNTTGG 2 cut(s) 644, 676
AluBI AGCT 3 cut(s) 304, 1049, 1068
AluI AGCT 3 cut(s) 304, 1049, 1068
Alw26I GTCTC 2 cut(s) 30, 328
AlwI GGATC 1 cut(s) 1025
Ama87I CYCGRG 1 cut(s) 11
AoxI GGCC 2 cut(s) 311, 944
ApoI RAATTY 3 cut(s) 278, 385, 971
ArsI GACNNNNNNTTYG 2 cut(s) 183, 215
Asp700I GAANNNNTTC 1 cut(s) 554
AspA2I CCTAGG 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 312
AsuII TTCGAA 1 cut(s) 994
AvaI CYCGRG 1 cut(s) 11
AvrII CCTAGG 1 cut(s) 308
BalI TGGCCA 1 cut(s) 946
BccI CCATC 3 cut(s) 192, 424, 843
BciT130I CCWGG 1 cut(s) 595
BciVI GTATCC 2 cut(s) 583, 1048
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 30, 328
BfaI CTAG 3 cut(s) 224, 299, 309
BfmI CTRYAG 1 cut(s) 936
BfuI GTATCC 2 cut(s) 583, 1048
BglII AGATCT 1 cut(s) 75
BlnI CCTAGG 1 cut(s) 308
Bme1390I CCNGG 1 cut(s) 595
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 696
BmrFI CCNGG 1 cut(s) 595
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 3 cut(s) 259, 372, 1084
BmuI ACTGGG 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 616
Bpu10I CCTNAGC 1 cut(s) 1050
Bpu14I TTCGAA 1 cut(s) 994
BpuEI CTTGAG 1 cut(s) 1090
BsaBI GATNNNNATC 1 cut(s) 931
BsaHI GRCGYC 1 cut(s) 788
BsaJI CCNNGG 1 cut(s) 308
BsaWI WCCGGW 1 cut(s) 1058
BsaXI ACNNNNNCTCC 2 cut(s) 598, 628
Bsc4I CCNNNNNNNGG 3 cut(s) 375, 586, 1018
Bse1I ACTGG 1 cut(s) 241
Bse3DI GCAATG 2 cut(s) 355, 706
Bse8I GATNNNNATC 1 cut(s) 931
BseBI CCWGG 1 cut(s) 595
BseDI CCNNGG 1 cut(s) 308
BseGI GGATG 1 cut(s) 453
BseJI GATNNNNATC 1 cut(s) 931
BseLI CCNNNNNNNGG 3 cut(s) 375, 586, 1018
BseMI GCAATG 2 cut(s) 355, 706
BseMII CTCAG 2 cut(s) 273, 1097
BseNI ACTGG 1 cut(s) 241
BsgI GTGCAG 1 cut(s) 145
BshFI GGCC 2 cut(s) 313, 946
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 1 cut(s) 1059
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 3 cut(s) 375, 586, 1018
BsmAI GTCTC 2 cut(s) 30, 328
BsmBI CGTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 521
BsnI GGCC 2 cut(s) 313, 946
BsoBI CYCGRG 1 cut(s) 11
Bsp119I TTCGAA 1 cut(s) 994
Bsp143I GATC 5 cut(s) 75, 217, 295, 730, 1030
BspACI CCGC 4 cut(s) 121, 369, 617, 907
BspANI GGCC 2 cut(s) 313, 946
BspCNI CTCAG 2 cut(s) 272, 1096
BspHI TCATGA 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 696
BspPI GGATC 1 cut(s) 1025
BspT104I TTCGAA 1 cut(s) 994
BsrDI GCAATG 2 cut(s) 355, 706
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 5 cut(s) 75, 217, 295, 730, 1030
BssNI GRCGYC 1 cut(s) 788
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 595
Bst4CI ACNGT 4 cut(s) 691, 740, 802, 866
Bst6I CTCTTC 1 cut(s) 28
BstACI GRCGYC 1 cut(s) 788
BstBI TTCGAA 1 cut(s) 994
BstDEI CTNAG 4 cut(s) 259, 581, 1050, 1083
BstF5I GGATG 1 cut(s) 453
BstKTI GATC 5 cut(s) 78, 220, 298, 733, 1033
BstMAI GTCTC 2 cut(s) 30, 328
BstMBI GATC 5 cut(s) 75, 217, 295, 730, 1030
BstMWI GCNNNNNNNGC 1 cut(s) 310
BstNI CCWGG 1 cut(s) 595
BstNSI RCATGY 3 cut(s) 216, 323, 992
BstSCI CCNGG 1 cut(s) 593
BstSFI CTRYAG 1 cut(s) 936
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BsuI GTATCC 2 cut(s) 583, 1048
BsuRI GGCC 2 cut(s) 313, 946
BtsCI GGATG 1 cut(s) 453
BtsIMutI CAGTG 3 cut(s) 234, 696, 745
CciI TCATGA 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 312
CseI GACGC 2 cut(s) 47, 777
Csp6I GTAC 2 cut(s) 794, 862
CviAII CATG 5 cut(s) 175, 213, 320, 942, 989
CviJI RGCY 9 cut(s) 255, 304, 313, 579, 635, 697, 946, 1049, 1068
CviKI_1 RGCY 9 cut(s) 255, 304, 313, 579, 635, 697, 946, 1049, 1068
CviQI GTAC 2 cut(s) 794, 862
DdeI CTNAG 4 cut(s) 259, 581, 1050, 1083
DpnI GATC 5 cut(s) 77, 219, 297, 732, 1032
DpnII GATC 5 cut(s) 75, 217, 295, 730, 1030
EaeI YGGCCR 1 cut(s) 944
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
EciI GGCGGA 1 cut(s) 606
Eco130I CCWWGG 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 593
EcoT14I CCWWGG 1 cut(s) 308
EcoT22I ATGCAT 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 308
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 5 cut(s) 178, 216, 323, 945, 992
FalI AAGNNNNNCTT 2 cut(s) 807, 839
FaqI GGGAC 1 cut(s) 521
FatI CATG 5 cut(s) 174, 212, 319, 941, 988
FauNDI CATATG 2 cut(s) 328, 872
FbaI TGATCA 1 cut(s) 217
FokI GGATG 1 cut(s) 440
FspBI CTAG 3 cut(s) 224, 299, 309
GsuI CTGGAG 1 cut(s) 616
HaeIII GGCC 2 cut(s) 313, 946
HapII CCGG 1 cut(s) 1059
HgaI GACGC 2 cut(s) 47, 777
Hin1I GRCGYC 1 cut(s) 788
Hin1II CATG 5 cut(s) 178, 216, 323, 945, 992
HinfI GANTC 6 cut(s) 412, 818, 913, 932, 1062, 1108
HpaII CCGG 1 cut(s) 1059
Hpy166II GTNNAC 1 cut(s) 574
Hpy188I TCNGA 3 cut(s) 425, 501, 782
Hpy188III TCNNGA 6 cut(s) 175, 202, 299, 443, 734, 767
Hpy8I GTNNAC 1 cut(s) 574
HpyAV CCTTC 2 cut(s) 142, 708
HpyCH4III ACNGT 4 cut(s) 691, 740, 802, 866
HpyCH4IV ACGT 1 cut(s) 1006
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpyF3I CTNAG 4 cut(s) 259, 581, 1050, 1083
HpySE526I ACGT 1 cut(s) 1006
Hsp92I GRCGYC 1 cut(s) 788
Hsp92II CATG 5 cut(s) 178, 216, 323, 945, 992
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 5 cut(s) 75, 217, 295, 730, 1030
LmnI GCTCC 1 cut(s) 694
LweI GCATC 3 cut(s) 259, 372, 1084
MaeI CTAG 3 cut(s) 224, 299, 309
MaeII ACGT 1 cut(s) 1006
MaeIII GTNAC 3 cut(s) 475, 866, 1007
MalI GATC 5 cut(s) 77, 219, 297, 732, 1032
MboI GATC 5 cut(s) 75, 217, 295, 730, 1030
MboII GAAGA 8 cut(s) 42, 45, 287, 612, 655, 827, 908, 911
MflI RGATCY 1 cut(s) 75
MlsI TGGCCA 1 cut(s) 946
MluCI AATT 7 cut(s) 156, 278, 385, 603, 971, 1014, 1113
MluNI TGGCCA 1 cut(s) 946
MlyI GAGTC 1 cut(s) 1117
MnlI CCTC 7 cut(s) 20, 495, 519, 528, 562, 654, 736
Mox20I TGGCCA 1 cut(s) 946
Mph1103I ATGCAT 1 cut(s) 214
MroXI GAANNNNTTC 1 cut(s) 554
MscI TGGCCA 1 cut(s) 946
MseI TTAA 2 cut(s) 6, 155
Msp20I TGGCCA 1 cut(s) 946
MspI CCGG 1 cut(s) 1059
MspR9I CCNGG 1 cut(s) 595
MvaI CCWGG 1 cut(s) 595
MwoI GCNNNNNNNGC 1 cut(s) 310
NdeI CATATG 2 cut(s) 328, 872
NdeII GATC 5 cut(s) 75, 217, 295, 730, 1030
NlaIII CATG 5 cut(s) 178, 216, 323, 945, 992
NlaIV GGNNCC 1 cut(s) 696
NmuCI GTSAC 2 cut(s) 866, 1007
NsiI ATGCAT 1 cut(s) 214
NspI RCATGY 3 cut(s) 216, 323, 992
NspV TTCGAA 1 cut(s) 994
PaeR7I CTCGAG 1 cut(s) 11
PagI TCATGA 1 cut(s) 174
PciI ACATGT 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 554
PfeI GAWTC 5 cut(s) 412, 818, 913, 932, 1062
PleI GAGTC 1 cut(s) 1116
PpsI GAGTC 1 cut(s) 1116
PscI ACATGT 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 593
PspGI CCWGG 1 cut(s) 593
PspN4I GGNNCC 1 cut(s) 696
PspPI GGNCC 1 cut(s) 312
PspXI VCTCGAGB 1 cut(s) 11
PsrI GAACNNNNNNTAC 2 cut(s) 786, 818
PsuI RGATCY 1 cut(s) 75
RsaI GTAC 2 cut(s) 795, 863
RsaNI GTAC 2 cut(s) 794, 862
SaqAI TTAA 2 cut(s) 6, 155
Sau3AI GATC 5 cut(s) 75, 217, 295, 730, 1030
Sau96I GGNCC 1 cut(s) 312
SchI GAGTC 1 cut(s) 1117
ScrFI CCNGG 1 cut(s) 595
SfaNI GCATC 3 cut(s) 259, 372, 1084
SfcI CTRYAG 1 cut(s) 936
Sfr274I CTCGAG 1 cut(s) 11
SfuI TTCGAA 1 cut(s) 994
SlaI CTCGAG 1 cut(s) 11
SmlI CTYRAG 2 cut(s) 11, 1069
SmoI CTYRAG 2 cut(s) 11, 1069
Sse9I AATT 7 cut(s) 156, 278, 385, 603, 971, 1014, 1113
SsiI CCGC 4 cut(s) 121, 369, 617, 907
SspMI CTAG 3 cut(s) 224, 299, 309
StyD4I CCNGG 1 cut(s) 593
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 4 cut(s) 691, 740, 802, 866
TaiI ACGT 1 cut(s) 1009
TaqI TCGA 3 cut(s) 12, 994, 1092
TasI AATT 7 cut(s) 156, 278, 385, 603, 971, 1014, 1113
TfiI GAWTC 5 cut(s) 412, 818, 913, 932, 1062
Tru1I TTAA 2 cut(s) 6, 155
Tru9I TTAA 2 cut(s) 6, 155
TscAI CASTG 3 cut(s) 241, 696, 745
TseFI GTSAC 2 cut(s) 866, 1007
Tsp45I GTSAC 2 cut(s) 866, 1007
TspDTI ATGAA 6 cut(s) 122, 163, 191, 485, 917, 965
TspGWI ACGGA 1 cut(s) 781
TspRI CASTG 3 cut(s) 241, 696, 745
XapI RAATTY 3 cut(s) 278, 385, 971
XbaI TCTAGA 1 cut(s) 298
XceI RCATGY 3 cut(s) 216, 323, 992
XhoI CTCGAG 1 cut(s) 11
XmaJI CCTAGG 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 554
XspI CTAG 3 cut(s) 224, 299, 309
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.