MD09G1191300.v1.1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000234
Physical Location & Seq
Forward (+)
16798129 .. 16799244
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1191300.v1.1.491

Sequence Viewer

Length: 1116 bp
ATGAATGACGAAGGCTGCACTTTTTCCGAGTACCTTCCTGAAGAGATCTTGGTCAACATTCTAGTAAGATTACCAGTAAAATCCCTTGTTCGGTTTACGTGTGTATGCAAGTTCTGGAGTGATTTGATTCAAAGTTCGAGGTTTATTGGAAAACATCTTCATAGGAATGTAACAAACCATGCGCATTCTTTTGTAATTGCTCTCTACGAAAGTACGAGCAAACCCAAGATAAGCTACACTCTTTTATCTAATGAGACGATGGAGCCGTGCTTGAAGATTAAGCATCCCTTGTCTGGGTACAAAATTGACGTACATGGTTCAGTTGATGGCTTAGTTTGCCTGTCATATGAACTAGGGGATTTGGATACTTCTATATACCTATGCAACCTGTCAATTCGGAAACATGTGGTCCTTCCTCCGACCAGTACTCTGAGCAGGCACTCTGATGTATGTTTCACTGTTTCATTTGGGTTCCACCCAGGGCTCAACGACTACAAGGTGGTAAGGATGGTCTCTTTTAATGGAGGGAAGCTTTGCAGTGAACTGGAGGTTTATAGCTTGAGCACAAAATCTTGGAAGAGGATTGATAATCCATTGGTAAAGACCATGGCTTGGCAGTCTGGAAATGCAGTGTGTAATGGAGTAGCATACTGGATTATGCAAAAGCAGAATGGTACCTTTTGTTTTGTGTCTTTTGATACCGGGAGTGAGGTATTTGAAGAATTCTGGCTACCAGATGTAGTTCTCCGTGGAATAAATTCCGGGCTTGATAATTACAAGGAATTAATTGCAGAGTACAAAGGATCAGTTTGCTTGTTGCAGTCCAATATAACTAGGGGACCGGACCTCATCGGCATATGGGCTCTCAAAGAAAAGGCTTTTAAGGCACTGGATGTTGTTCTTATTCCTCAACGGAAGAGTATTTACCCACTGAGCTTTAGAATGAATAACAAACTCCTTGTGGGGTGGCCTTGTGCAGATGGTAAGAACTATATGACTTCAGTTGATCTTGAAGCCAGGATGGTTACTGAAACTAGAGTTACGCTGGCATTAGATCGCTTAAATGAGTTTCATGCTTATACTTACGTGGAGAGTCTAGTCTTACTCAAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

372

Amino Acids

42.02

Weight (kDa)

7.53

Isoelectric Point (pI)

24.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 11 - 46 4.7e-09 F-box-like
F-box PF00646 12 - 48 1.5e-09 F-box domain
FBA_1 PF07734 85 - 246 3.7e-13 F-box associated beta propeller domain
FBA_3 PF08268 88 - 292 1.3e-21 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 183
Acc65I GGTACC 1 cut(s) 674
AccB1I GGYRCC 1 cut(s) 674
AccB7I CCANNNNNTGG 1 cut(s) 612
AclWI GGATC 1 cut(s) 811
AcsI RAATTY 2 cut(s) 722, 757
AcuI CTGAAG 2 cut(s) 60, 984
AfaI GTAC 7 cut(s) 32, 214, 299, 312, 427, 676, 797
AfiI CCNNNNNNNGG 4 cut(s) 90, 293, 294, 612
AflIII ACRYGT 2 cut(s) 98, 403
AgsI TTSAA 4 cut(s) 131, 274, 719, 1013
AjnI CCWGG 2 cut(s) 478, 1016
AluBI AGCT 4 cut(s) 234, 532, 558, 936
AluI AGCT 4 cut(s) 234, 532, 558, 936
Alw21I GWGCWC 1 cut(s) 566
Alw26I GTCTC 2 cut(s) 248, 517
AlwI GGATC 1 cut(s) 811
AoxI GGCC 1 cut(s) 968
ApeKI GCWGC 1 cut(s) 15
ApoI RAATTY 2 cut(s) 722, 757
AseI ATTAAT 1 cut(s) 785
Asp700I GAANNNNTTC 1 cut(s) 757
Asp718I GGTACC 1 cut(s) 674
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 3 cut(s) 409, 839, 844
AsuC2I CCSGG 2 cut(s) 703, 763
AvaII GGWCC 3 cut(s) 409, 839, 844
BanI GGYRCC 1 cut(s) 674
BanII GRGCYC 2 cut(s) 486, 865
BarI GAAGNNNNNNTAC 2 cut(s) 908, 940
Bbv12I GWGCWC 1 cut(s) 566
BbvI GCAGC 1 cut(s) 2
BccI CCATC 5 cut(s) 253, 320, 502, 974, 1015
BceAI ACGGC 1 cut(s) 250
BciT130I CCWGG 2 cut(s) 480, 1018
BciVI GTATCC 1 cut(s) 358
BcnI CCSGG 2 cut(s) 703, 763
BcoDI GTCTC 2 cut(s) 248, 517
BfaI CTAG 5 cut(s) 62, 353, 834, 1035, 1097
BfuI GTATCC 1 cut(s) 358
BglII AGATCT 1 cut(s) 45
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
BmcAI AGTACT 1 cut(s) 427
Bme1390I CCNGG 4 cut(s) 480, 703, 763, 1018
Bme18I GGWCC 3 cut(s) 409, 839, 844
BmgT120I GGNCC 3 cut(s) 409, 839, 844
BmiI GGNNCC 4 cut(s) 264, 473, 676, 840
BmrFI CCNGG 4 cut(s) 480, 703, 763, 1018
BmsI GCATC 1 cut(s) 292
BpmI CTGGAG 2 cut(s) 136, 566
BpuEI CTTGAG 2 cut(s) 580, 1091
BpuMI CCSGG 2 cut(s) 703, 763
BsaAI YACGTR 2 cut(s) 99, 1087
BsaI GGTCTC 1 cut(s) 517
BsaJI CCNNGG 4 cut(s) 478, 479, 606, 748
BsaWI WCCGGW 1 cut(s) 841
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 293, 294, 612
Bse1I ACTGG 5 cut(s) 74, 423, 549, 656, 894
BseBI CCWGG 2 cut(s) 480, 1018
BseDI CCNNGG 4 cut(s) 478, 479, 606, 748
BseGI GGATG 4 cut(s) 283, 513, 898, 1026
BseLI CCNNNNNNNGG 4 cut(s) 90, 293, 294, 612
BseMII CTCAG 2 cut(s) 422, 923
BseNI ACTGG 5 cut(s) 74, 423, 549, 656, 894
BseXI GCAGC 1 cut(s) 2
BsgI GTGCAG 1 cut(s) 996
BshFI GGCC 1 cut(s) 970
BshNI GGYRCC 1 cut(s) 674
BsiHKAI GWGCWC 1 cut(s) 566
BsiSI CCGG 3 cut(s) 702, 762, 842
BslFI GGGAC 1 cut(s) 852
BslI CCNNNNNNNGG 4 cut(s) 90, 293, 294, 612
BsmAI GTCTC 2 cut(s) 248, 517
BsmBI CGTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 852
BsmI GAATGC 1 cut(s) 184
BsnI GGCC 1 cut(s) 970
Bso31I GGTCTC 1 cut(s) 517
Bsp1286I GDGCHC 3 cut(s) 486, 566, 865
Bsp143I GATC 4 cut(s) 45, 803, 1006, 1054
Bsp19I CCATGG 1 cut(s) 606
BspANI GGCC 1 cut(s) 970
BspCNI CTCAG 2 cut(s) 423, 924
BspLI GGNNCC 4 cut(s) 264, 473, 676, 840
BspPI GGATC 1 cut(s) 811
BspT107I GGYRCC 1 cut(s) 674
BspTNI GGTCTC 1 cut(s) 517
BsrI ACTGG 5 cut(s) 74, 423, 549, 656, 894
BssECI CCNNGG 4 cut(s) 478, 479, 606, 748
BssMI GATC 4 cut(s) 45, 803, 1006, 1054
BssT1I CCWWGG 1 cut(s) 606
Bst2UI CCWGG 2 cut(s) 480, 1018
Bst4CI ACNGT 1 cut(s) 460
Bst6I CTCTTC 3 cut(s) 36, 572, 911
BstBAI YACGTR 2 cut(s) 99, 1087
BstC8I GCNNGC 2 cut(s) 437, 1047
BstDEI CTNAG 3 cut(s) 331, 431, 932
BstDSI CCRYGG 2 cut(s) 606, 748
BstF5I GGATG 4 cut(s) 283, 513, 898, 1026
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 4 cut(s) 48, 806, 1009, 1057
BstMAI GTCTC 2 cut(s) 248, 517
BstMBI GATC 4 cut(s) 45, 803, 1006, 1054
BstMWI GCNNNNNNNGC 2 cut(s) 336, 884
BstNI CCWGG 2 cut(s) 480, 1018
BstNSI RCATGY 1 cut(s) 407
BstSCI CCNGG 4 cut(s) 478, 701, 761, 1016
BstV1I GCAGC 1 cut(s) 2
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuI GTATCC 1 cut(s) 358
BsuRI GGCC 1 cut(s) 970
BtgI CCRYGG 2 cut(s) 606, 748
BtsCI GGATG 4 cut(s) 283, 513, 898, 1026
BtsI GCAGTG 2 cut(s) 544, 636
BtsIMutI CAGTG 5 cut(s) 456, 544, 636, 887, 929
Cac8I GCNNGC 2 cut(s) 437, 1047
CfoI GCGC 1 cut(s) 184
Cfr13I GGNCC 3 cut(s) 409, 839, 844
Csp6I GTAC 7 cut(s) 31, 213, 298, 311, 426, 675, 796
CviAII CATG 5 cut(s) 179, 314, 404, 607, 1073
CviQI GTAC 7 cut(s) 31, 213, 298, 311, 426, 675, 796
DdeI CTNAG 3 cut(s) 331, 431, 932
DpnI GATC 4 cut(s) 47, 805, 1008, 1056
DpnII GATC 4 cut(s) 45, 803, 1006, 1054
Eam1104I CTCTTC 3 cut(s) 36, 572, 911
EarI CTCTTC 3 cut(s) 36, 572, 911
Eco130I CCWWGG 1 cut(s) 606
Eco24I GRGCYC 2 cut(s) 486, 865
Eco31I GGTCTC 1 cut(s) 517
Eco47I GGWCC 3 cut(s) 409, 839, 844
Eco57I CTGAAG 2 cut(s) 60, 984
EcoRI GAATTC 1 cut(s) 722
EcoRII CCWGG 2 cut(s) 478, 1016
EcoT14I CCWWGG 1 cut(s) 606
EcoT38I GRGCYC 2 cut(s) 486, 865
ErhI CCWWGG 1 cut(s) 606
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 5 cut(s) 182, 317, 407, 610, 1076
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FaqI GGGAC 1 cut(s) 852
FatI CATG 5 cut(s) 178, 313, 403, 606, 1072
FauNDI CATATG 2 cut(s) 346, 857
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 4 cut(s) 270, 520, 905, 1033
FriOI GRGCYC 2 cut(s) 486, 865
Fsp4HI GCNGC 1 cut(s) 16
FspAI RTGCGCAY 1 cut(s) 183
FspBI CTAG 5 cut(s) 62, 353, 834, 1035, 1097
FspI TGCGCA 1 cut(s) 183
GlaI GCGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 16
GsuI CTGGAG 2 cut(s) 136, 566
HaeIII GGCC 1 cut(s) 970
HapII CCGG 3 cut(s) 702, 762, 842
HhaI GCGC 1 cut(s) 184
Hin1II CATG 5 cut(s) 182, 317, 407, 610, 1076
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 2 cut(s) 127, 1093
HpaII CCGG 3 cut(s) 702, 762, 842
Hpy166II GTNNAC 3 cut(s) 55, 96, 542
Hpy188I TCNGA 5 cut(s) 28, 399, 420, 432, 445
Hpy188III TCNNGA 4 cut(s) 38, 115, 621, 1010
Hpy8I GTNNAC 3 cut(s) 55, 96, 542
HpyAV CCTTC 3 cut(s) 5, 44, 422
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4IV ACGT 3 cut(s) 98, 309, 1086
HpyCH4V TGCA 9 cut(s) 18, 108, 384, 537, 629, 661, 791, 820, 977
HpyF10VI GCNNNNNNNGC 2 cut(s) 336, 884
HpyF3I CTNAG 3 cut(s) 331, 431, 932
HpySE526I ACGT 3 cut(s) 98, 309, 1086
Hsp92II CATG 5 cut(s) 182, 317, 407, 610, 1076
HspAI GCGC 1 cut(s) 182
KpnI GGTACC 1 cut(s) 678
Kzo9I GATC 4 cut(s) 45, 803, 1006, 1054
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 1 cut(s) 2
LweI GCATC 1 cut(s) 292
MaeI CTAG 5 cut(s) 62, 353, 834, 1035, 1097
MaeII ACGT 3 cut(s) 98, 309, 1086
MaeIII GTNAC 3 cut(s) 169, 1024, 1039
MalI GATC 4 cut(s) 47, 805, 1008, 1056
MboI GATC 4 cut(s) 45, 803, 1006, 1054
MboII GAAGA 6 cut(s) 53, 149, 286, 589, 731, 928
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 3 cut(s) 486, 566, 865
MluCI AATT 8 cut(s) 195, 303, 393, 722, 757, 772, 782, 786
MlyI GAGTC 1 cut(s) 1102
MmeI TCCRAC 1 cut(s) 443
MnlI CCTC 8 cut(s) 132, 426, 518, 541, 573, 703, 857, 918
MroXI GAANNNNTTC 1 cut(s) 757
MseI TTAA 5 cut(s) 279, 519, 785, 882, 1061
MslI CAYNNNNRTG 2 cut(s) 165, 444
MspI CCGG 3 cut(s) 702, 762, 842
MspR9I CCNGG 4 cut(s) 480, 703, 763, 1018
Mva1269I GAATGC 1 cut(s) 184
MvaI CCWGG 2 cut(s) 480, 1018
MwoI GCNNNNNNNGC 2 cut(s) 336, 884
NciI CCSGG 2 cut(s) 703, 763
NcoI CCATGG 1 cut(s) 606
NdeI CATATG 2 cut(s) 346, 857
NdeII GATC 4 cut(s) 45, 803, 1006, 1054
NlaIII CATG 5 cut(s) 182, 317, 407, 610, 1076
NlaIV GGNNCC 4 cut(s) 264, 473, 676, 840
NsbI TGCGCA 1 cut(s) 183
NspI RCATGY 1 cut(s) 407
PasI CCCWGGG 1 cut(s) 479
PciI ACATGT 1 cut(s) 403
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PctI GAATGC 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 757
PfeI GAWTC 1 cut(s) 127
PflMI CCANNNNNTGG 1 cut(s) 612
PkrI GCNGC 1 cut(s) 17
PleI GAGTC 1 cut(s) 1101
PpsI GAGTC 1 cut(s) 1101
Ppu21I YACGTR 2 cut(s) 99, 1087
PscI ACATGT 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 785
Psp6I CCWGG 2 cut(s) 478, 1016
PspGI CCWGG 2 cut(s) 478, 1016
PspN4I GGNNCC 4 cut(s) 264, 473, 676, 840
PspPI GGNCC 3 cut(s) 409, 839, 844
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 7 cut(s) 32, 214, 299, 312, 427, 676, 797
RsaNI GTAC 7 cut(s) 31, 213, 298, 311, 426, 675, 796
RseI CAYNNNNRTG 2 cut(s) 165, 444
SaqAI TTAA 5 cut(s) 279, 519, 785, 882, 1061
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 4 cut(s) 45, 803, 1006, 1054
Sau96I GGNCC 3 cut(s) 409, 839, 844
ScaI AGTACT 1 cut(s) 427
SchI GAGTC 1 cut(s) 1102
ScrFI CCNGG 4 cut(s) 480, 703, 763, 1018
SduI GDGCHC 3 cut(s) 486, 566, 865
SfaNI GCATC 1 cut(s) 292
SinI GGWCC 3 cut(s) 409, 839, 844
SmiMI CAYNNNNRTG 2 cut(s) 165, 444
SmlI CTYRAG 2 cut(s) 559, 1106
SmoI CTYRAG 2 cut(s) 559, 1106
Sse9I AATT 8 cut(s) 195, 303, 393, 722, 757, 772, 782, 786
SspMI CTAG 5 cut(s) 62, 353, 834, 1035, 1097
StyD4I CCNGG 4 cut(s) 478, 701, 761, 1016
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 1 cut(s) 460
TaiI ACGT 3 cut(s) 101, 312, 1089
TaqI TCGA 1 cut(s) 137
TasI AATT 8 cut(s) 195, 303, 393, 722, 757, 772, 782, 786
TatI WGTACW 2 cut(s) 425, 795
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 5 cut(s) 279, 519, 785, 882, 1061
Tru9I TTAA 5 cut(s) 279, 519, 785, 882, 1061
TscAI CASTG 5 cut(s) 463, 544, 636, 894, 936
TseI GCWGC 1 cut(s) 15
TspDTI ATGAA 6 cut(s) 17, 149, 363, 453, 959, 1061
TspGWI ACGGA 2 cut(s) 737, 928
TspRI CASTG 5 cut(s) 463, 544, 636, 894, 936
Van91I CCANNNNNTGG 1 cut(s) 612
VpaK11BI GGWCC 3 cut(s) 409, 839, 844
VspI ATTAAT 1 cut(s) 785
XapI RAATTY 2 cut(s) 722, 757
XceI RCATGY 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 757
XspI CTAG 5 cut(s) 62, 353, 834, 1035, 1097
ZrmI AGTACT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.