Rh4DG010300

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000234
Physical Location & Seq
Forward (+)
1531554 .. 1531907
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG010300.1

Sequence Viewer

Length: 354 bp
ATGTTTCCTACTCCCACAAAAAAAGGTACAGCTGCAAGAGTGACGTCGTTTGAAGATCTACCCCAAGAAATAAAGTTTGAAATCTTTGAAAAACTACCTGCTGTGAAATATGTACTGCGGTCAAGATGCGTTTGCAAATCTTGGAATACTTTGATTTGCAGCCCAAGTTTCATAAACGCTCATCATAAGAAAAACGTCTTGATGAAAGGTAATACGAATTACGAGTATTTACTCACCGGCAGTGCTAAACAGAAGTGCTTCTCACTCTCTTCTGCTGAAACATATGCCAAGTACGTTCTTGGAATTAGAGCTTCTGATTCCGAAAGACAAATTAGGGTCATACCTCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

117

Amino Acids

13.31

Weight (kDa)

9.48

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 17 - 57 2.6e-09 F-box domain
F-box-like PF12937 17 - 56 1e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 106
AciI CCGC 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 3 cut(s) 28, 114, 293
AgsI TTSAA 3 cut(s) 53, 80, 89
AluBI AGCT 2 cut(s) 32, 311
AluI AGCT 2 cut(s) 32, 311
ApeKI GCWGC 2 cut(s) 32, 159
Asp700I GAANNNNTTC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 226
BbvI GCAGC 2 cut(s) 19, 171
BfuAI ACCTGC 1 cut(s) 106
BglII AGATCT 1 cut(s) 55
BisI GCNGC 2 cut(s) 33, 160
BlsI GCNGC 2 cut(s) 34, 161
BmsI GCATC 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 44
Bse118I RCCGGY 1 cut(s) 236
BseXI GCAGC 2 cut(s) 19, 171
BsiSI CCGG 1 cut(s) 237
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssMI GATC 1 cut(s) 55
BssNI GRCGYC 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 274
BstACI GRCGYC 1 cut(s) 44
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 19, 171
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 247
BveI ACCTGC 1 cut(s) 106
Cfr10I RCCGGY 1 cut(s) 236
Csp6I GTAC 3 cut(s) 27, 113, 292
CviJI RGCY 3 cut(s) 32, 162, 311
CviKI_1 RGCY 3 cut(s) 32, 162, 311
CviQI GTAC 3 cut(s) 27, 113, 292
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
FaiI YATR 6 cut(s) 111, 173, 186, 283, 285, 341
FauNDI CATATG 1 cut(s) 283
Fnu4HI GCNGC 2 cut(s) 33, 160
Fsp4HI GCNGC 2 cut(s) 33, 160
GluI GCNGC 2 cut(s) 33, 160
HapII CCGG 1 cut(s) 237
Hin1I GRCGYC 1 cut(s) 44
HinfI GANTC 1 cut(s) 317
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 316, 322
Hpy188III TCNNGA 3 cut(s) 123, 199, 347
Hpy99I CGWCG 1 cut(s) 49
HpyCH4IV ACGT 3 cut(s) 44, 195, 294
HpyCH4V TGCA 3 cut(s) 35, 135, 159
HpySE526I ACGT 3 cut(s) 44, 195, 294
Hsp92I GRCGYC 1 cut(s) 44
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 2 cut(s) 111, 250
Lsp1109I GCAGC 2 cut(s) 19, 171
LweI GCATC 1 cut(s) 116
MaeII ACGT 3 cut(s) 44, 195, 294
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 2 cut(s) 65, 261
MflI RGATCY 1 cut(s) 55
MluCI AATT 3 cut(s) 217, 303, 330
MnlI CCTC 1 cut(s) 354
MroXI GAANNNNTTC 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 1 cut(s) 237
NdeI CATATG 1 cut(s) 283
NdeII GATC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 317
PkrI GCNGC 2 cut(s) 34, 161
PsuI RGATCY 1 cut(s) 55
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 3 cut(s) 28, 114, 293
RsaNI GTAC 3 cut(s) 27, 113, 292
SatI GCNGC 2 cut(s) 33, 160
Sau3AI GATC 1 cut(s) 55
SetI ASST 9 cut(s) 28, 34, 47, 100, 198, 211, 297, 313, 346
SfaNI GCATC 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
Sse9I AATT 3 cut(s) 217, 303, 330
SsiI CCGC 1 cut(s) 118
TaiI ACGT 3 cut(s) 47, 198, 297
TasI AATT 3 cut(s) 217, 303, 330
TatI WGTACW 1 cut(s) 112
TfiI GAWTC 1 cut(s) 317
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 2 cut(s) 32, 159
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 160, 218
TspRI CASTG 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 257
ZraI GACGTC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.