Prupe.3G047200_v2.0.a1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000234
Physical Location & Seq
Reverse (-)
3359483 .. 3360575
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G047200.1

Sequence Viewer

Length: 801 bp
ATGGCATCCACCGCATTATGCAAGAAAGAAATCTTAACAGACATCCTAGTTAGACTACCTGCAAAAACCCTCGTTCGGTTTCTGTGTGCATGCAAGTCAAGGAGTGATTTGATTAACAGCTCGAGTTTTATCACCACACAGCTTAACAGGAATGTCACCAAACACCTCCATGTCTCTCTACTTTGCCTCCACTACCCCGATCTCAAACGTCCCTTCGAGTTCTACGAACATTATGAGGACTACCCAGATCTTAAACGAGAATTGGAATGGTCACTTTTCTCCAACAAAACATTTGAGCATTGCTCCAAGTTAAACCATCCCTTGGGTATCAAGAAAGATTATAGGGTATATGGCTCAAGCAATGGCCTAGTTTGCATTTCAGACGACAAATTGGACACCAAGAGCCCTATACACATATGGAACCCCTCGGTTAGGAAATTTAGAACCCTTCCAATGAGCACCAACCACAACGTTAAATTTGGCTACATTGCTCTCGAATTCGGGTTCCACCCCGGGGTTAACGACTACAAGGTTGTAAGGATGTTGTGCGTCCACAAAGACAATGCTTTTGCGGTCGAAGTTTATAGTCTCAGCACAGACTCTTGGAAGATGGTTGAAGAACATCCTGTTTGGTTAAAATGCACTTGGCAGAACCATAGAGGTACATTTCATAATGGAGTAGCATACCACATCACTACTACAAAAAAGCAAAAAGACGACGGTAAATCACCGTCGTGTATTTGGTTTTTCAATGGTCGTGGAATCCACCGTCATCTTTTCCCTCATAAACCACGACGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

267

Amino Acids

31.08

Weight (kDa)

9.38

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 67
AccB7I CCANNNNNTGG 1 cut(s) 322
AciI CCGC 2 cut(s) 12, 572
AclI AACGTT 1 cut(s) 471
AcsI RAATTY 3 cut(s) 437, 476, 497
AfaI GTAC 1 cut(s) 664
AfiI CCNNNNNNNGG 4 cut(s) 75, 322, 432, 514
AgsI TTSAA 2 cut(s) 617, 751
AleI CACNNNNGTG 1 cut(s) 733
AluBI AGCT 2 cut(s) 120, 142
AluI AGCT 2 cut(s) 120, 142
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 2 cut(s) 178, 593
Ama87I CYCGRG 2 cut(s) 121, 512
AoxI GGCC 1 cut(s) 364
ApoI RAATTY 3 cut(s) 437, 476, 497
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
AsuC2I CCSGG 2 cut(s) 513, 514
AsuHPI GGTGA 3 cut(s) 124, 148, 720
AvaI CYCGRG 2 cut(s) 121, 512
BanII GRGCYC 1 cut(s) 407
Bbv12I GWGCWC 1 cut(s) 461
BccI CCATC 2 cut(s) 324, 604
BcnI CCSGG 2 cut(s) 513, 514
BcoDI GTCTC 2 cut(s) 178, 593
BfaI CTAG 2 cut(s) 47, 368
BfuAI ACCTGC 1 cut(s) 67
BglII AGATCT 1 cut(s) 247
Bme1390I CCNGG 2 cut(s) 513, 514
BmeT110I CYCGRG 2 cut(s) 121, 512
BmiI GGNNCC 2 cut(s) 422, 506
BmrFI CCNGG 2 cut(s) 513, 514
BmsI GCATC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BpuEI CTTGAG 1 cut(s) 340
BpuMI CCSGG 2 cut(s) 513, 514
BsaJI CCNNGG 5 cut(s) 321, 426, 511, 512, 513
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 322, 432, 514
Bse3DI GCAATG 3 cut(s) 298, 367, 486
BseDI CCNNGG 5 cut(s) 321, 426, 511, 512, 513
BseGI GGATG 5 cut(s) 5, 42, 316, 546, 622
BseLI CCNNNNNNNGG 4 cut(s) 75, 322, 432, 514
BseMI GCAATG 3 cut(s) 298, 367, 486
BseMII CTCAG 1 cut(s) 604
Bsh1285I CGRYCG 1 cut(s) 576
BshFI GGCC 1 cut(s) 366
BsiEI CGRYCG 1 cut(s) 576
BsiHKAI GWGCWC 1 cut(s) 461
BsiHKCI CYCGRG 2 cut(s) 121, 512
BsiSI CCGG 1 cut(s) 513
BslFI GGGAC 1 cut(s) 195
BslI CCNNNNNNNGG 4 cut(s) 75, 322, 432, 514
BsmAI GTCTC 2 cut(s) 178, 593
BsmFI GGGAC 1 cut(s) 195
BsnI GGCC 1 cut(s) 366
BsoBI CYCGRG 2 cut(s) 121, 512
Bsp1286I GDGCHC 2 cut(s) 407, 461
Bsp143I GATC 2 cut(s) 199, 247
BspACI CCGC 2 cut(s) 12, 572
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 1 cut(s) 603
BspLI GGNNCC 2 cut(s) 422, 506
BspMI ACCTGC 1 cut(s) 67
BsrDI GCAATG 3 cut(s) 298, 367, 486
BssECI CCNNGG 5 cut(s) 321, 426, 511, 512, 513
BssMI GATC 2 cut(s) 199, 247
BssT1I CCWWGG 1 cut(s) 321
Bst4CI ACNGT 3 cut(s) 722, 732, 770
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 590
BstENI CCTNNNNNAGG 1 cut(s) 430
BstF5I GGATG 5 cut(s) 5, 42, 316, 546, 622
BstKTI GATC 2 cut(s) 202, 250
BstMAI GTCTC 2 cut(s) 178, 593
BstMBI GATC 2 cut(s) 199, 247
BstMCI CGRYCG 1 cut(s) 576
BstMWI GCNNNNNNNGC 2 cut(s) 11, 372
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 2 cut(s) 511, 512
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BsuRI GGCC 1 cut(s) 366
BtsCI GGATG 5 cut(s) 5, 42, 316, 546, 622
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 91
Cfr9I CCCGGG 1 cut(s) 512
CseI GACGC 1 cut(s) 538
Csp6I GTAC 1 cut(s) 663
CspCI CAANNNNNGTGG 2 cut(s) 739, 774
CviAII CATG 2 cut(s) 90, 170
CviJI RGCY 6 cut(s) 120, 142, 354, 366, 405, 483
CviKI_1 RGCY 6 cut(s) 120, 142, 354, 366, 405, 483
CviQI GTAC 1 cut(s) 663
DdeI CTNAG 1 cut(s) 590
DpnI GATC 2 cut(s) 201, 249
DpnII GATC 2 cut(s) 199, 247
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 407
Eco88I CYCGRG 2 cut(s) 121, 512
EcoNI CCTNNNNNAGG 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 2 cut(s) 93, 173
FaqI GGGAC 1 cut(s) 195
FatI CATG 2 cut(s) 89, 169
FauNDI CATATG 1 cut(s) 416
FokI GGATG 4 cut(s) 29, 303, 553, 609
FriOI GRGCYC 1 cut(s) 407
FspBI CTAG 2 cut(s) 47, 368
HaeIII GGCC 1 cut(s) 366
HapII CCGG 1 cut(s) 513
HgaI GACGC 1 cut(s) 538
Hin1II CATG 2 cut(s) 93, 173
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 2 cut(s) 599, 762
HpaI GTTAAC 1 cut(s) 520
HpaII CCGG 1 cut(s) 513
HphI GGTGA 3 cut(s) 124, 148, 720
Hpy166II GTNNAC 2 cut(s) 520, 553
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 2 cut(s) 331, 494
Hpy8I GTNNAC 2 cut(s) 520, 553
Hpy99I CGWCG 3 cut(s) 722, 736, 798
HpyAV CCTTC 2 cut(s) 223, 458
HpyCH4III ACNGT 3 cut(s) 722, 732, 770
HpyCH4IV ACGT 2 cut(s) 208, 471
HpyCH4V TGCA 6 cut(s) 21, 62, 89, 93, 375, 642
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 372
HpyF3I CTNAG 1 cut(s) 590
HpySE526I ACGT 2 cut(s) 208, 471
Hsp92II CATG 2 cut(s) 93, 173
KspAI GTTAAC 1 cut(s) 520
Kzo9I GATC 2 cut(s) 199, 247
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 5 cut(s) 72, 133, 258, 526, 639
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 47, 368
MaeII ACGT 2 cut(s) 208, 471
MaeIII GTNAC 2 cut(s) 154, 270
MalI GATC 2 cut(s) 201, 249
MboI GATC 2 cut(s) 199, 247
MboII GAAGA 2 cut(s) 619, 629
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 2 cut(s) 407, 461
MluCI AATT 5 cut(s) 260, 389, 437, 476, 497
MlyI GAGTC 1 cut(s) 593
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 7 cut(s) 80, 176, 197, 229, 436, 653, 792
MseI TTAA 8 cut(s) 35, 114, 144, 252, 311, 474, 519, 635
MslI CAYNNNNRTG 2 cut(s) 168, 733
MspI CCGG 1 cut(s) 513
MspR9I CCNGG 2 cut(s) 513, 514
MwoI GCNNNNNNNGC 2 cut(s) 11, 372
NciI CCSGG 2 cut(s) 513, 514
NdeI CATATG 1 cut(s) 416
NdeII GATC 2 cut(s) 199, 247
NlaIII CATG 2 cut(s) 93, 173
NlaIV GGNNCC 2 cut(s) 422, 506
NmuCI GTSAC 2 cut(s) 154, 270
NspI RCATGY 1 cut(s) 93
OliI CACNNNNGTG 1 cut(s) 733
PaeI GCATGC 1 cut(s) 93
PaeR7I CTCGAG 1 cut(s) 121
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 1 cut(s) 762
PflMI CCANNNNNTGG 1 cut(s) 322
PleI GAGTC 1 cut(s) 593
PpsI GAGTC 1 cut(s) 593
Psp1406I AACGTT 1 cut(s) 471
PspN4I GGNNCC 2 cut(s) 422, 506
PspXI VCTCGAGB 1 cut(s) 121
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 1 cut(s) 664
RsaNI GTAC 1 cut(s) 663
RseI CAYNNNNRTG 2 cut(s) 168, 733
SaqAI TTAA 8 cut(s) 35, 114, 144, 252, 311, 474, 519, 635
Sau3AI GATC 2 cut(s) 199, 247
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 2 cut(s) 513, 514
SduI GDGCHC 2 cut(s) 407, 461
SetI ASST 8 cut(s) 61, 122, 144, 168, 211, 474, 534, 664
SfaNI GCATC 1 cut(s) 14
Sfr274I CTCGAG 1 cut(s) 121
SlaI CTCGAG 1 cut(s) 121
SmaI CCCGGG 1 cut(s) 514
SmiMI CAYNNNNRTG 2 cut(s) 168, 733
SmlI CTYRAG 2 cut(s) 121, 355
SmoI CTYRAG 2 cut(s) 121, 355
SphI GCATGC 1 cut(s) 93
Sse9I AATT 5 cut(s) 260, 389, 437, 476, 497
SsiI CCGC 2 cut(s) 12, 572
SspMI CTAG 2 cut(s) 47, 368
StyD4I CCNGG 2 cut(s) 511, 512
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 3 cut(s) 722, 732, 770
TaiI ACGT 2 cut(s) 211, 474
TaqI TCGA 4 cut(s) 122, 216, 495, 576
TasI AATT 5 cut(s) 260, 389, 437, 476, 497
TfiI GAWTC 1 cut(s) 762
Tru1I TTAA 8 cut(s) 35, 114, 144, 252, 311, 474, 519, 635
Tru9I TTAA 8 cut(s) 35, 114, 144, 252, 311, 474, 519, 635
TseFI GTSAC 2 cut(s) 154, 270
Tsp45I GTSAC 2 cut(s) 154, 270
TspDTI ATGAA 1 cut(s) 659
TspMI CCCGGG 1 cut(s) 512
Van91I CCANNNNNTGG 1 cut(s) 322
XagI CCTNNNNNAGG 1 cut(s) 430
XapI RAATTY 3 cut(s) 437, 476, 497
XceI RCATGY 1 cut(s) 93
XhoI CTCGAG 1 cut(s) 121
XmaI CCCGGG 1 cut(s) 512
XspI CTAG 2 cut(s) 47, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.