MD09G1281200.v1.1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000234
Physical Location & Seq
Forward (+)
35834565 .. 35835614
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1281200.v1.1.491

Sequence Viewer

Length: 1050 bp
ATGTCGACCCGTAAGAATGTAAAAGGGCATAGAAGAGATGCTCAACCTTTGTTGATGAGAGCTAGTTTAACGGAAGAAATCTTGTTTGACATCCTTGCAAGATTACGCGTGAAATCTCTTTTGCGGTTCAGAGGCATTTATAGATCTTGGAACAATTTAATTATCAGCCTTAGTTTCATAAACGCCCATCTTAAAAGGAATGTTGTGCAAAATTCTTGTGATCATCTACTCATCCACACTGACATGAGCAATTGCTTGTCACTCTTTGATGCTGAAACATTTTCCAAGCGTTTGGATTTTGAGCTTCCTGGTCATGATTTTGGTTTCGTTGTTCACAGTCCGTGCAATGGATTATTTTGCATCTCTAATTCTGCATTGATGACCTTGGAAAGTCCGGAACATCTATGGAACCCATCAATCAGAAAATTGAAAAGACTTCCCAATGGCCTTCAACATACAACTGTTTTCGTTCATCTAGGGTTTGGGTTTCATGGTGAGGTTGACGACTATAGGGTTGCGAGGGTTGCGAGGTTTCTATGCAACAAAAGTATCTTTGGGATTGAGGTTTACAATCTTAGACTGAATTGTTGGAGGACAATTACCGCGGTGCCTCCTGTTTCAAATGATGTCAATTTTTTGCAATCTGCGTGCGTTTTCCTGAACGGAGTTGTCTATTGGATCACAAAGGAGCCATCTCAACATAGCCCTTCCATCCTTACTTTTGATCTCGGCAACGAGGTTTTTCAAAAGATTCTGCTTCCTGAGACAACGGTCGAAGTGCCCACTGACGTCGGCATTCAAGTGGTTGAGAACTCAATCTCCTTGTTCCAAGTAAGAACAGACAGGCTTGGCTTGTACTGTGACATAAGCGTTTTGGAAGTGGATACTTGGAAAATGATGCAGACAATTATTTTTCCATACTCTAAACTGTTGGAATTTTTGGATCGCTGGACCCGCCCCACTCTAACGACACCGATACTGTCCCCACTTAACCACCTGCACAATCCTCAGGTGTGGGGTTTTACCACAAAATGCCTCGGTATTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

350

Amino Acids

40.02

Weight (kDa)

8.56

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 94 - 257 1.4e-12 F-box associated beta propeller domain
FBA_1 PF07734 110 - 285 1.8e-18 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1005
AatII GACGTC 1 cut(s) 792
Acc36I ACCTGC 1 cut(s) 1005
AccB1I GGYRCC 1 cut(s) 607
AccI GTMKAC 1 cut(s) 5
AccII CGCG 2 cut(s) 108, 605
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 4 cut(s) 124, 603, 605, 955
AclWI GGATC 2 cut(s) 686, 951
AcsI RAATTY 2 cut(s) 211, 935
AcyI GRCGYC 1 cut(s) 789
AfaI GTAC 1 cut(s) 857
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 5 cut(s) 430, 452, 621, 746, 800
AjnI CCWGG 1 cut(s) 307
AloI GAACNNNNNNTCC 2 cut(s) 803, 835
AluBI AGCT 2 cut(s) 62, 304
AluI AGCT 2 cut(s) 62, 304
Alw26I GTCTC 1 cut(s) 758
AlwI GGATC 2 cut(s) 686, 951
Aor13HI TCCGGA 1 cut(s) 394
AoxI GGCC 1 cut(s) 445
ApoI RAATTY 2 cut(s) 211, 935
AspS9I GGNCC 1 cut(s) 951
AsuHPI GGTGA 1 cut(s) 506
AvaII GGWCC 1 cut(s) 951
AxyI CCTNAGG 1 cut(s) 1008
BaeGI GKGCMC 1 cut(s) 783
BaeI ACNNNNGTAYC 2 cut(s) 532, 565
BanI GGYRCC 1 cut(s) 607
BccI CCATC 4 cut(s) 195, 421, 700, 719
BciT130I CCWGG 1 cut(s) 309
BciVI GTATCC 1 cut(s) 877
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 758
BfaI CTAG 2 cut(s) 63, 476
BfmI CTRYAG 1 cut(s) 508
BfuAI ACCTGC 1 cut(s) 1005
BfuI GTATCC 1 cut(s) 877
BglII AGATCT 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 951
BmgT120I GGNCC 1 cut(s) 951
BmiI GGNNCC 4 cut(s) 410, 609, 690, 953
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 4 cut(s) 28, 259, 369, 888
BoxI GACNNNNGTC 1 cut(s) 770
BsaHI GRCGYC 1 cut(s) 789
BsaJI CCNNGG 3 cut(s) 384, 603, 1036
BsaWI WCCGGW 1 cut(s) 394
BsaXI ACNNNNNCTCC 2 cut(s) 803, 833
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse21I CCTNAGG 1 cut(s) 1008
Bse3DI GCAATG 1 cut(s) 352
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 3 cut(s) 384, 603, 1036
BseGI GGATG 3 cut(s) 90, 231, 711
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 2 cut(s) 753, 1022
BseSI GKGCMC 1 cut(s) 783
BsgI GTGCAG 1 cut(s) 983
Bsh1236I CGCG 2 cut(s) 108, 605
Bsh1285I CGRYCG 1 cut(s) 774
BshFI GGCC 1 cut(s) 447
BshNI GGYRCC 1 cut(s) 607
BsiEI CGRYCG 1 cut(s) 774
BsiSI CCGG 1 cut(s) 395
BslFI GGGAC 1 cut(s) 967
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 758
BsmFI GGGAC 1 cut(s) 967
BsmI GAATGC 1 cut(s) 795
BsnI GGCC 1 cut(s) 447
Bsp1286I GDGCHC 1 cut(s) 783
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 5 cut(s) 143, 220, 678, 724, 943
BspACI CCGC 4 cut(s) 124, 603, 605, 955
BspANI GGCC 1 cut(s) 447
BspCNI CTCAG 2 cut(s) 754, 1021
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 2 cut(s) 108, 605
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 4 cut(s) 410, 609, 690, 953
BspMI ACCTGC 1 cut(s) 1005
BspPI GGATC 2 cut(s) 686, 951
BspT107I GGYRCC 1 cut(s) 607
BsrDI GCAATG 1 cut(s) 352
BssECI CCNNGG 3 cut(s) 384, 603, 1036
BssMI GATC 5 cut(s) 143, 220, 678, 724, 943
BssNI GRCGYC 1 cut(s) 789
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 6 cut(s) 338, 463, 772, 860, 930, 981
Bst6I CTCTTC 1 cut(s) 28
BstACI GRCGYC 1 cut(s) 789
BstC8I GCNNGC 1 cut(s) 649
BstDEI CTNAG 4 cut(s) 170, 575, 762, 1008
BstDSI CCRYGG 1 cut(s) 603
BstF5I GGATG 3 cut(s) 90, 231, 711
BstFNI CGCG 2 cut(s) 108, 605
BstKTI GATC 5 cut(s) 146, 223, 681, 727, 946
BstMAI GTCTC 1 cut(s) 758
BstMBI GATC 5 cut(s) 143, 220, 678, 724, 943
BstMCI CGRYCG 1 cut(s) 774
BstMWI GCNNNNNNNGC 2 cut(s) 524, 954
BstNI CCWGG 1 cut(s) 309
BstPAI GACNNNNGTC 1 cut(s) 770
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 1 cut(s) 508
BstSLI GKGCMC 1 cut(s) 783
BstUI CGCG 2 cut(s) 108, 605
BstX2I RGATCY 1 cut(s) 143
BstXI CCANNNNNNTGG 1 cut(s) 292
BstYI RGATCY 1 cut(s) 143
Bsu36I CCTNAGG 1 cut(s) 1008
BsuI GTATCC 1 cut(s) 877
BsuRI GGCC 1 cut(s) 447
BtgI CCRYGG 1 cut(s) 603
BtsCI GGATG 3 cut(s) 90, 231, 711
BtsIMutI CAGTG 2 cut(s) 237, 783
BveI ACCTGC 1 cut(s) 1005
Cac8I GCNNGC 1 cut(s) 649
CciI TCATGA 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 951
Cfr42I CCGCGG 1 cut(s) 606
Csp6I GTAC 1 cut(s) 856
CviAII CATG 3 cut(s) 244, 314, 491
CviJI RGCY 8 cut(s) 62, 168, 304, 447, 691, 705, 847, 852
CviKI_1 RGCY 8 cut(s) 62, 168, 304, 447, 691, 705, 847, 852
CviQI GTAC 1 cut(s) 856
DdeI CTNAG 4 cut(s) 170, 575, 762, 1008
DpnI GATC 5 cut(s) 145, 222, 680, 726, 945
DpnII GATC 5 cut(s) 143, 220, 678, 724, 943
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 951
Eco81I CCTNAGG 1 cut(s) 1008
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 3 cut(s) 247, 317, 494
FaqI GGGAC 1 cut(s) 967
FatI CATG 3 cut(s) 243, 313, 490
FauI CCCGC 1 cut(s) 962
FbaI TGATCA 1 cut(s) 220
FblI GTMKAC 1 cut(s) 5
FokI GGATG 3 cut(s) 77, 218, 698
FspBI CTAG 2 cut(s) 63, 476
HaeIII GGCC 1 cut(s) 447
HapII CCGG 1 cut(s) 395
Hin1I GRCGYC 1 cut(s) 789
Hin1II CATG 3 cut(s) 247, 317, 494
HincII GTYRAC 2 cut(s) 6, 502
HindII GTYRAC 2 cut(s) 6, 502
HinfI GANTC 1 cut(s) 751
HpaII CCGG 1 cut(s) 395
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 4 cut(s) 6, 334, 502, 568
Hpy188I TCNGA 2 cut(s) 131, 422
Hpy188III TCNNGA 4 cut(s) 314, 395, 658, 761
Hpy8I GTNNAC 4 cut(s) 6, 334, 502, 568
Hpy99I CGWCG 1 cut(s) 794
HpyAV CCTTC 2 cut(s) 458, 717
HpyCH4III ACNGT 6 cut(s) 338, 463, 772, 860, 930, 981
HpyCH4IV ACGT 1 cut(s) 789
HpyCH4V TGCA 9 cut(s) 98, 208, 345, 360, 374, 540, 640, 901, 1000
HpyF10VI GCNNNNNNNGC 2 cut(s) 524, 954
HpyF3I CTNAG 4 cut(s) 170, 575, 762, 1008
HpySE526I ACGT 1 cut(s) 789
Hsp92I GRCGYC 1 cut(s) 789
Hsp92II CATG 3 cut(s) 247, 317, 494
Kpn2I TCCGGA 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 220
KspI CCGCGG 1 cut(s) 606
Kzo9I GATC 5 cut(s) 143, 220, 678, 724, 943
LmnI GCTCC 1 cut(s) 688
LweI GCATC 4 cut(s) 28, 259, 369, 888
MaeI CTAG 2 cut(s) 63, 476
MaeII ACGT 1 cut(s) 789
MaeIII GTNAC 2 cut(s) 258, 860
MalI GATC 5 cut(s) 145, 222, 680, 726, 945
MboI GATC 5 cut(s) 143, 220, 678, 724, 943
MboII GAAGA 2 cut(s) 45, 86
MfeI CAATTG 1 cut(s) 250
MflI RGATCY 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 783
MluI ACGCGT 1 cut(s) 106
MmeI TCCRAC 2 cut(s) 569, 912
MroI TCCGGA 1 cut(s) 394
MseI TTAA 4 cut(s) 68, 158, 192, 990
MslI CAYNNNNRTG 2 cut(s) 242, 800
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 309
MunI CAATTG 1 cut(s) 250
Mva1269I GAATGC 1 cut(s) 795
MvaI CCWGG 1 cut(s) 309
MvnI CGCG 2 cut(s) 108, 605
MwoI GCNNNNNNNGC 2 cut(s) 524, 954
NdeII GATC 5 cut(s) 143, 220, 678, 724, 943
NlaIII CATG 3 cut(s) 247, 317, 494
NlaIV GGNNCC 4 cut(s) 410, 609, 690, 953
NmeAIII GCCGAG 1 cut(s) 708
NmuCI GTSAC 2 cut(s) 258, 860
PagI TCATGA 1 cut(s) 313
PaqCI CACCTGC 1 cut(s) 1005
PctI GAATGC 1 cut(s) 795
PfeI GAWTC 1 cut(s) 751
PshAI GACNNNNGTC 1 cut(s) 770
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 4 cut(s) 410, 609, 690, 953
PspPI GGNCC 1 cut(s) 951
PsuI RGATCY 1 cut(s) 143
RsaI GTAC 1 cut(s) 857
RsaNI GTAC 1 cut(s) 856
RseI CAYNNNNRTG 2 cut(s) 242, 800
SacII CCGCGG 1 cut(s) 606
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 4 cut(s) 68, 158, 192, 990
Sau3AI GATC 5 cut(s) 143, 220, 678, 724, 943
Sau96I GGNCC 1 cut(s) 951
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 783
SfaNI GCATC 4 cut(s) 28, 259, 369, 888
SfcI CTRYAG 1 cut(s) 508
Sfr303I CCGCGG 1 cut(s) 606
SgrBI CCGCGG 1 cut(s) 606
SinI GGWCC 1 cut(s) 951
SmiMI CAYNNNNRTG 2 cut(s) 242, 800
SsiI CCGC 4 cut(s) 124, 603, 605, 955
SspMI CTAG 2 cut(s) 63, 476
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 6 cut(s) 338, 463, 772, 860, 930, 981
TaiI ACGT 1 cut(s) 792
TaqI TCGA 2 cut(s) 5, 774
TatI WGTACW 1 cut(s) 855
TfiI GAWTC 1 cut(s) 751
Tru1I TTAA 4 cut(s) 68, 158, 192, 990
Tru9I TTAA 4 cut(s) 68, 158, 192, 990
TscAI CASTG 2 cut(s) 244, 790
TseFI GTSAC 2 cut(s) 258, 860
Tsp45I GTSAC 2 cut(s) 258, 860
TspDTI ATGAA 3 cut(s) 166, 461, 479
TspGWI ACGGA 3 cut(s) 86, 330, 678
TspRI CASTG 2 cut(s) 244, 790
VpaK11BI GGWCC 1 cut(s) 951
XapI RAATTY 2 cut(s) 211, 935
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 63, 476
ZraI GACGTC 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.