Rh2CG428600

F-box protein CPR30-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000234
Physical Location & Seq
Reverse (-)
58200493 .. 58209155
8663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG428600.1

Sequence Viewer

Length: 1032 bp
ATGGTGGGAGGAGAAATTGTGACCGATATCCTACAGAGACTATCCTCAAAATCCCTTATTCGGTTTAGGTGTGTATGCAAGTCATGGCGAGATTTGATTCGGAGCTCTAGTTTTGCTCGGTCACATCTTAATAGGAATGTAGCGAGACGCTCCAATAGATATCTGTATGCTTACCACCAGTCCTCAATAGATGAACCAGAACATTGTCAGTACTCACTTTTCTCTACTGAAACATTTGAGCCGTGCTTGAATTTAAGACATCCCTTATGGACCAGAGAAAAATTGAGAATATTTGGTTCAAGCAATGGCCTTGTGTGTATCTCTGATGAAAAACTTCATCCAAATAGTCGTATATGCATATGGAACCCATCTATTCGGAAGTCTAGGACTCTTCCGAATATTGAGACGCATTTGTCTGATATAAGTACTACCCATCTCTCATTTGGATTCCATCCAGAGCTTGATGATTACATAGTTGTGAGGATTGTCCATCCTTATATAGGGAGTCCTGGAGTTGAGGTTTACACCCTTGGTACAAACTCTTGGAAGAGCATTCGGGGAACAGCATATTGGACTGCTAAGACAGGTTCAGAATATAAGATTGTATCATTTGATGCGGGAAGTGAAGAATTTCAAGAACTGATCGTGCCAAAGAAAAATTCCTTTACGGCGCTGCAAGTGTGCGAGGAATCACTTTGCCTCTTTCAATACGAGTGGGAAAGGCTGGAATGGTCAGGAGAATGGACCATTGACTCATGGATGATGAAAGAGCGGTCTTTGAACAAGGTGGATTCAAGTTCACTCGGGAAAAGCGGATGCTATTTTCCACTCAGCTCTAGCATAGATAATAAACTACTCATTGCATATATGGATATAGATATTAGAGATGAATATCGAGTAGTGGCTGCCGAAGTGGCTTTATATAACATTGAATCCAAACAATTAAATAGAACTGGAATTAGGTTGAAGCGGCTACGTGGCGGCTTTGATGGCGGTGCTTACATTGAAAGTCTGGTTTTGCTCGCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

343

Amino Acids

39.46

Weight (kDa)

7.58

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 38 5.7e-09 F-box domain
F-box-like PF12937 5 - 40 2.2e-06 F-box-like
Beta-prop_KIB1-4 PF03478 84 - 197 1.7e-06 KIB1-4 beta-propeller
FBA_3 PF08268 94 - 237 2e-12 F-box associated beta propeller domain
FBA_1 PF07734 101 - 261 1.1e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 412
AccBSI CCGCTC 1 cut(s) 772
AciI CCGC 6 cut(s) 617, 772, 813, 970, 981, 993
AcsI RAATTY 3 cut(s) 250, 629, 658
AfaI GTAC 3 cut(s) 212, 427, 535
AfiI CCNNNNNNNGG 2 cut(s) 60, 500
AgsI TTSAA 9 cut(s) 250, 300, 635, 707, 781, 795, 932, 967, 1007
AjnI CCWGG 1 cut(s) 508
AjuI GAANNNNNNNTTGG 4 cut(s) 553, 585, 643, 675
AluBI AGCT 3 cut(s) 105, 460, 834
AluI AGCT 3 cut(s) 105, 460, 834
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 3 cut(s) 31, 139, 398
Ama87I CYCGRG 1 cut(s) 803
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 2 cut(s) 673, 905
ApoI RAATTY 3 cut(s) 250, 629, 658
Asp700I GAANNNNTTC 2 cut(s) 333, 630
AspLEI GCGC 1 cut(s) 673
AspS9I GGNCC 2 cut(s) 270, 744
AvaI CYCGRG 1 cut(s) 803
AvaII GGWCC 2 cut(s) 270, 744
BanII GRGCYC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 2 cut(s) 660, 892
BccI CCATC 5 cut(s) 376, 441, 459, 498, 983
BceAI ACGGC 2 cut(s) 226, 684
BciT130I CCWGG 1 cut(s) 510
BcoDI GTCTC 3 cut(s) 31, 139, 398
BfaI CTAG 3 cut(s) 108, 384, 837
BfmI CTRYAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 674
BglI GCCNNNNNGGC 1 cut(s) 914
BisI GCNGC 4 cut(s) 674, 906, 971, 982
BlsI GCNGC 4 cut(s) 675, 907, 972, 983
BmcAI AGTACT 2 cut(s) 212, 427
Bme1390I CCNGG 1 cut(s) 510
Bme18I GGWCC 2 cut(s) 270, 744
BmeT110I CYCGRG 1 cut(s) 803
BmgT120I GGNCC 2 cut(s) 270, 744
BmiI GGNNCC 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 510
BmsI GCATC 2 cut(s) 604, 806
BpmI CTGGAG 1 cut(s) 531
BsaAI YACGTR 1 cut(s) 977
BsaBI GATNNNNATC 1 cut(s) 891
BsaJI CCNNGG 1 cut(s) 529
BsaXI ACNNNNNCTCC 5 cut(s) 33, 94, 124, 504, 534
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 500
Bse1I ACTGG 2 cut(s) 178, 958
Bse3DI GCAATG 2 cut(s) 310, 858
Bse8I GATNNNNATC 1 cut(s) 891
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 1 cut(s) 529
BseGI GGATG 6 cut(s) 259, 337, 451, 490, 765, 821
BseJI GATNNNNATC 1 cut(s) 891
BseLI CCNNNNNNNGG 2 cut(s) 60, 500
BseMI GCAATG 2 cut(s) 310, 858
BseMII CTCAG 1 cut(s) 844
BseNI ACTGG 2 cut(s) 178, 958
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 2 cut(s) 660, 892
BshFI GGCC 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 803
BslI CCNNNNNNNGG 2 cut(s) 60, 500
BsmAI GTCTC 3 cut(s) 31, 139, 398
BsmBI CGTCTC 2 cut(s) 139, 398
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 1 cut(s) 309
BsoBI CYCGRG 1 cut(s) 803
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 642
BspACI CCGC 6 cut(s) 617, 772, 813, 970, 981, 993
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 1 cut(s) 843
BspLI GGNNCC 1 cut(s) 365
BspQI GCTCTTC 1 cut(s) 542
BsrBI CCGCTC 1 cut(s) 772
BsrDI GCAATG 2 cut(s) 310, 858
BsrI ACTGG 2 cut(s) 178, 958
BssECI CCNNGG 1 cut(s) 529
BssMI GATC 1 cut(s) 642
BssT1I CCWWGG 1 cut(s) 529
Bst2UI CCWGG 1 cut(s) 510
Bst6I CTCTTC 2 cut(s) 396, 542
BstBAI YACGTR 1 cut(s) 977
BstC8I GCNNGC 1 cut(s) 1023
BstDEI CTNAG 2 cut(s) 579, 830
BstENI CCTNNNNNAGG 1 cut(s) 498
BstF5I GGATG 6 cut(s) 259, 337, 451, 490, 765, 821
BstH2I RGCGCY 1 cut(s) 674
BstHHI GCGC 1 cut(s) 673
BstKTI GATC 1 cut(s) 645
BstMAI GTCTC 3 cut(s) 31, 139, 398
BstMBI GATC 1 cut(s) 642
BstMWI GCNNNNNNNGC 2 cut(s) 914, 990
BstNI CCWGG 1 cut(s) 510
BstSCI CCNGG 1 cut(s) 508
BstSFI CTRYAG 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 660, 892
BsuRI GGCC 1 cut(s) 309
BtsCI GGATG 6 cut(s) 259, 337, 451, 490, 765, 821
Cac8I GCNNGC 1 cut(s) 1023
CfoI GCGC 1 cut(s) 673
Cfr13I GGNCC 2 cut(s) 270, 744
CseI GACGC 2 cut(s) 156, 415
Csp6I GTAC 3 cut(s) 211, 426, 534
CspCI CAANNNNNGTGG 2 cut(s) 695, 730
CviAII CATG 2 cut(s) 84, 756
CviQI GTAC 3 cut(s) 211, 426, 534
DdeI CTNAG 2 cut(s) 579, 830
DpnI GATC 1 cut(s) 644
DpnII GATC 1 cut(s) 642
DrdI GACNNNNNNGTC 1 cut(s) 412
DseDI GACNNNNNNGTC 1 cut(s) 412
Eam1104I CTCTTC 2 cut(s) 396, 542
EarI CTCTTC 2 cut(s) 396, 542
Ecl136II GAGCTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 529
Eco24I GRGCYC 1 cut(s) 107
Eco32I GATATC 2 cut(s) 28, 161
Eco47I GGWCC 2 cut(s) 270, 744
Eco53kI GAGCTC 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 803
EcoICRI GAGCTC 1 cut(s) 105
EcoNI CCTNNNNNAGG 1 cut(s) 498
EcoRII CCWGG 1 cut(s) 508
EcoRV GATATC 2 cut(s) 28, 161
EcoT14I CCWWGG 1 cut(s) 529
EcoT22I ATGCAT 1 cut(s) 359
EcoT38I GRGCYC 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 529
Esp3I CGTCTC 2 cut(s) 139, 398
FaeI CATG 2 cut(s) 87, 759
FatI CATG 2 cut(s) 83, 755
FauI CCCGC 1 cut(s) 610
FauNDI CATATG 1 cut(s) 359
Fnu4HI GCNGC 4 cut(s) 674, 906, 971, 982
FokI GGATG 6 cut(s) 246, 324, 438, 477, 772, 828
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 4 cut(s) 674, 906, 971, 982
FspBI CTAG 3 cut(s) 108, 384, 837
GlaI GCGC 1 cut(s) 672
GluI GCNGC 4 cut(s) 674, 906, 971, 982
GsuI CTGGAG 1 cut(s) 531
HaeII RGCGCY 1 cut(s) 674
HaeIII GGCC 1 cut(s) 309
HgaI GACGC 2 cut(s) 156, 415
HhaI GCGC 1 cut(s) 673
Hin1II CATG 2 cut(s) 87, 759
Hin6I GCGC 1 cut(s) 671
HinP1I GCGC 1 cut(s) 671
HinfI GANTC 8 cut(s) 97, 388, 447, 505, 689, 752, 791, 932
Hpy166II GTNNAC 2 cut(s) 523, 800
Hpy188I TCNGA 6 cut(s) 102, 325, 378, 396, 418, 592
Hpy188III TCNNGA 4 cut(s) 455, 635, 735, 805
Hpy8I GTNNAC 2 cut(s) 523, 800
HpyCH4IV ACGT 1 cut(s) 976
HpyCH4V TGCA 4 cut(s) 78, 357, 676, 863
HpyF10VI GCNNNNNNNGC 2 cut(s) 914, 990
HpyF3I CTNAG 2 cut(s) 579, 830
HpySE526I ACGT 1 cut(s) 976
Hsp92II CATG 2 cut(s) 87, 759
HspAI GCGC 1 cut(s) 671
Kzo9I GATC 1 cut(s) 642
LguI GCTCTTC 1 cut(s) 542
LmnI GCTCC 2 cut(s) 102, 155
Lsp1109I GCAGC 2 cut(s) 660, 892
LweI GCATC 2 cut(s) 604, 806
MaeI CTAG 3 cut(s) 108, 384, 837
MaeII ACGT 1 cut(s) 976
MaeIII GTNAC 2 cut(s) 19, 120
MalI GATC 1 cut(s) 644
MbiI CCGCTC 1 cut(s) 772
MboI GATC 1 cut(s) 642
MboII GAAGA 3 cut(s) 383, 559, 638
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 7 cut(s) 15, 250, 281, 629, 658, 941, 957
MlyI GAGTC 3 cut(s) 382, 514, 746
MnlI CCTC 6 cut(s) 55, 193, 474, 511, 679, 710
Mph1103I ATGCAT 1 cut(s) 359
MroXI GAANNNNTTC 2 cut(s) 333, 630
MseI TTAA 4 cut(s) 129, 254, 944, 1030
MslI CAYNNNNRTG 1 cut(s) 476
MspR9I CCNGG 1 cut(s) 510
Mva1269I GAATGC 1 cut(s) 552
MvaI CCWGG 1 cut(s) 510
MwoI GCNNNNNNNGC 2 cut(s) 914, 990
NdeI CATATG 1 cut(s) 359
NdeII GATC 1 cut(s) 642
NlaIII CATG 2 cut(s) 87, 759
NlaIV GGNNCC 1 cut(s) 365
NmuCI GTSAC 2 cut(s) 19, 120
NsiI ATGCAT 1 cut(s) 359
PciSI GCTCTTC 1 cut(s) 542
PctI GAATGC 1 cut(s) 552
PdmI GAANNNNTTC 2 cut(s) 333, 630
PfeI GAWTC 5 cut(s) 97, 447, 689, 791, 932
PfoI TCCNGGA 1 cut(s) 508
PkrI GCNGC 4 cut(s) 675, 907, 972, 983
PleI GAGTC 3 cut(s) 382, 513, 746
PpsI GAGTC 3 cut(s) 382, 513, 746
Ppu21I YACGTR 1 cut(s) 977
Psp124BI GAGCTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 508
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 1 cut(s) 365
PspPI GGNCC 2 cut(s) 270, 744
RsaI GTAC 3 cut(s) 212, 427, 535
RsaNI GTAC 3 cut(s) 211, 426, 534
RseI CAYNNNNRTG 1 cut(s) 476
SacI GAGCTC 1 cut(s) 107
SapI GCTCTTC 1 cut(s) 542
SaqAI TTAA 4 cut(s) 129, 254, 944, 1030
SatI GCNGC 4 cut(s) 674, 906, 971, 982
Sau3AI GATC 1 cut(s) 642
Sau96I GGNCC 2 cut(s) 270, 744
ScaI AGTACT 2 cut(s) 212, 427
SchI GAGTC 3 cut(s) 382, 514, 746
ScrFI CCNGG 1 cut(s) 510
SduI GDGCHC 1 cut(s) 107
SetI ASST 9 cut(s) 71, 107, 462, 522, 589, 789, 836, 965, 979
SfaNI GCATC 2 cut(s) 604, 806
SfcI CTRYAG 1 cut(s) 32
SinI GGWCC 2 cut(s) 270, 744
SmiMI CAYNNNNRTG 1 cut(s) 476
Sse9I AATT 7 cut(s) 15, 250, 281, 629, 658, 941, 957
SsiI CCGC 6 cut(s) 617, 772, 813, 970, 981, 993
SspI AATATT 2 cut(s) 291, 400
SspMI CTAG 3 cut(s) 108, 384, 837
SstI GAGCTC 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 508
StyI CCWWGG 1 cut(s) 529
TaiI ACGT 1 cut(s) 979
TaqI TCGA 1 cut(s) 895
TaqII GACCGA 2 cut(s) 38, 108
TasI AATT 7 cut(s) 15, 250, 281, 629, 658, 941, 957
TatI WGTACW 2 cut(s) 210, 425
TauI GCSGC 2 cut(s) 973, 984
TfiI GAWTC 5 cut(s) 97, 447, 689, 791, 932
Tru1I TTAA 4 cut(s) 129, 254, 944, 1030
Tru9I TTAA 4 cut(s) 129, 254, 944, 1030
TseFI GTSAC 2 cut(s) 19, 120
TseI GCWGC 2 cut(s) 673, 905
Tsp45I GTSAC 2 cut(s) 19, 120
TspDTI ATGAA 5 cut(s) 207, 326, 342, 779, 903
VpaK11BI GGWCC 2 cut(s) 270, 744
XagI CCTNNNNNAGG 1 cut(s) 498
XapI RAATTY 3 cut(s) 250, 629, 658
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmnI GAANNNNTTC 2 cut(s) 333, 630
XspI CTAG 3 cut(s) 108, 384, 837
ZrmI AGTACT 2 cut(s) 212, 427
Zsp2I ATGCAT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.