Rmu_sc0005705.1_g000040

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005705.1
OG0000234
Physical Location & Seq
Forward (+)
145657 .. 148933
3277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005705.1_g000040.1.cds

Sequence Viewer

Length: 909 bp
atgtacaaagttgatgtctactcccttagattgaattcatggagagaacttggtgcagttctccccatttggtcttactctacatacctaaacaaatctgcaatacatgtcaatggagttgtgtactggatggtaaaggagaaaaactctgcaagatctttcatactttcttttgatatggacaatgaggttttccaaaagatggaactccctgagaaactagtcggagggattggttctgttagtatccaagtgtttgagaaatccctttctttgatacacttgagagaagatgaaaatcatcttgtaaggcatgtttcttactgtgacatctgggttatgggactggaaacatggaaaatgattcgcatgattcttccaccacaagtgagactttatccagcatatggacgtatggcatggccattgagctttacaacagatggagtttatatcgtaagggtggatgaaaaagagaaggacattggtctattgaatggccatcttccccgaatagatgttcccctaaaggtgtatgcggaattaatagctattgtgtcacaatgggggcagcaattgactgcagatgtcttcctagattcaaatctgtcaacccaggaaatcaggcttgaggttgtgagagaaattcttctgttggagatgtttgcaaatcaaagaattggaattgcaactaaaccatgcaaggactgtgctgcactgcgtggggggatgagccatatatggctctgtcatcttcaggctgcagtttttgacggttcaagctgcagaaagcagaggcttcctttgagatatggaagaagagattcagatacttcaaacatagttcttctgaaggaggctgtcatgatttctgcaactccagctccaagcacagttgttccaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

302

Amino Acids

34.46

Weight (kDa)

8.5

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 202, 407
AccI GTMKAC 1 cut(s) 18
AciI CCGC 1 cut(s) 539
AcoI YGGCCR 2 cut(s) 422, 499
AcsI RAATTY 2 cut(s) 34, 645
AcuI CTGAAG 2 cut(s) 740, 872
AdeI CACNNNGTG 1 cut(s) 722
AfaI GTAC 2 cut(s) 5, 125
AfiI CCNNNNNNNGG 2 cut(s) 202, 407
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 5 cut(s) 34, 496, 603, 780, 837
AhlI ACTAGT 1 cut(s) 220
AjnI CCWGG 1 cut(s) 615
AluBI AGCT 4 cut(s) 432, 551, 783, 884
AluI AGCT 4 cut(s) 432, 551, 783, 884
Alw26I GTCTC 1 cut(s) 385
AoxI GGCC 2 cut(s) 422, 499
ApeKI GCWGC 4 cut(s) 571, 713, 761, 783
ApoI RAATTY 2 cut(s) 34, 645
ArsI GACNNNNNNTTYG 1 cut(s) 32
AseI ATTAAT 1 cut(s) 545
Asp700I GAANNNNTTC 2 cut(s) 648, 823
BalI TGGCCA 2 cut(s) 424, 501
BbsI GAAGAC 1 cut(s) 583
BbvI GCAGC 4 cut(s) 583, 700, 748, 770
BccI CCATC 4 cut(s) 124, 196, 437, 510
BciT130I CCWGG 1 cut(s) 617
BciVI GTATCC 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 385
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 2 cut(s) 221, 596
BfmI CTRYAG 3 cut(s) 582, 762, 784
BfuI GTATCC 1 cut(s) 257
BglII AGATCT 1 cut(s) 155
BisI GCNGC 4 cut(s) 572, 714, 762, 784
BlsI GCNGC 4 cut(s) 573, 715, 763, 785
Bme1390I CCNGG 1 cut(s) 617
BmrFI CCNGG 1 cut(s) 617
BoxI GACNNNNGTC 1 cut(s) 486
BpiI GAAGAC 1 cut(s) 583
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BpmI CTGGAG 1 cut(s) 864
BpuEI CTTGAG 2 cut(s) 304, 650
BsaBI GATNNNNATC 2 cut(s) 297, 603
BsaJI CCNNGG 1 cut(s) 615
BsaXI ACNNNNNCTCC 2 cut(s) 868, 898
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 407
Bse1I ACTGG 2 cut(s) 131, 351
Bse8I GATNNNNATC 2 cut(s) 297, 603
BseBI CCWGG 1 cut(s) 617
BseDI CCNNGG 1 cut(s) 615
BseGI GGATG 3 cut(s) 135, 472, 735
BseJI GATNNNNATC 2 cut(s) 297, 603
BseLI CCNNNNNNNGG 2 cut(s) 202, 407
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 131, 351
BseXI GCAGC 4 cut(s) 583, 700, 748, 770
BsgI GTGCAG 2 cut(s) 75, 699
BshFI GGCC 2 cut(s) 424, 501
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 2 cut(s) 202, 407
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 2 cut(s) 424, 501
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 155
BspACI CCGC 1 cut(s) 539
BspANI GGCC 2 cut(s) 424, 501
BspCNI CTCAG 1 cut(s) 205
BspHI TCATGA 1 cut(s) 864
BspMAI CTGCAG 3 cut(s) 586, 766, 788
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 131, 351
BssECI CCNNGG 1 cut(s) 615
BssMI GATC 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 4 cut(s) 326, 710, 776, 895
Bst6I CTCTTC 1 cut(s) 814
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 2 cut(s) 26, 213
BstF5I GGATG 3 cut(s) 135, 472, 735
BstKTI GATC 1 cut(s) 158
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 881
BstNI CCWGG 1 cut(s) 617
BstNSI RCATGY 2 cut(s) 110, 317
BstPAI GACNNNNGTC 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 615
BstSFI CTRYAG 3 cut(s) 582, 762, 784
BstV1I GCAGC 4 cut(s) 583, 700, 748, 770
BstV2I GAAGAC 1 cut(s) 583
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 2 cut(s) 424, 501
BtsCI GGATG 3 cut(s) 135, 472, 735
BtsI GCAGTG 1 cut(s) 716
BtsIMutI CAGTG 1 cut(s) 716
CciI TCATGA 1 cut(s) 864
Csp6I GTAC 2 cut(s) 4, 124
CviAII CATG 8 cut(s) 39, 107, 314, 354, 370, 420, 699, 865
CviQI GTAC 2 cut(s) 4, 124
DdeI CTNAG 2 cut(s) 26, 213
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
DraIII CACNNNGTG 1 cut(s) 722
EaeI YGGCCR 2 cut(s) 422, 499
Eam1104I CTCTTC 1 cut(s) 814
EarI CTCTTC 1 cut(s) 814
Eco57I CTGAAG 2 cut(s) 740, 872
EcoRI GAATTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 615
FaeI CATG 8 cut(s) 42, 110, 317, 357, 373, 423, 702, 868
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FaqI GGGAC 1 cut(s) 357
FatI CATG 8 cut(s) 38, 106, 313, 353, 369, 419, 698, 864
FauNDI CATATG 1 cut(s) 406
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 4 cut(s) 572, 714, 762, 784
FokI GGATG 3 cut(s) 142, 479, 742
Fsp4HI GCNGC 4 cut(s) 572, 714, 762, 784
FspBI CTAG 2 cut(s) 221, 596
GluI GCNGC 4 cut(s) 572, 714, 762, 784
GsuI CTGGAG 1 cut(s) 864
HaeIII GGCC 2 cut(s) 424, 501
Hin1II CATG 8 cut(s) 42, 110, 317, 357, 373, 423, 702, 868
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HinfI GANTC 4 cut(s) 364, 373, 599, 824
Hpy166II GTNNAC 3 cut(s) 19, 124, 612
Hpy188I TCNGA 3 cut(s) 227, 829, 852
Hpy188III TCNNGA 1 cut(s) 865
Hpy8I GTNNAC 3 cut(s) 19, 124, 612
HpyAV CCTTC 2 cut(s) 472, 847
HpyCH4III ACNGT 4 cut(s) 326, 710, 776, 895
HpyCH4IV ACGT 1 cut(s) 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 881
HpyF3I CTNAG 2 cut(s) 26, 213
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 8 cut(s) 42, 110, 317, 357, 373, 423, 702, 868
Kzo9I GATC 1 cut(s) 155
LmnI GCTCC 1 cut(s) 889
Lsp1109I GCAGC 4 cut(s) 583, 700, 748, 770
MaeI CTAG 2 cut(s) 221, 596
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 2 cut(s) 326, 558
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 9 cut(s) 302, 368, 497, 583, 641, 746, 828, 831, 839
MfeI CAATTG 1 cut(s) 575
MflI RGATCY 1 cut(s) 155
MlsI TGGCCA 2 cut(s) 424, 501
MluCI AATT 6 cut(s) 34, 542, 575, 645, 678, 684
MluNI TGGCCA 2 cut(s) 424, 501
MmeI TCCRAC 2 cut(s) 205, 636
MnlI CCTC 5 cut(s) 181, 221, 625, 789, 850
Mox20I TGGCCA 2 cut(s) 424, 501
MroXI GAANNNNTTC 2 cut(s) 648, 823
MscI TGGCCA 2 cut(s) 424, 501
MseI TTAA 1 cut(s) 545
MslI CAYNNNNRTG 1 cut(s) 111
Msp20I TGGCCA 2 cut(s) 424, 501
MspR9I CCNGG 1 cut(s) 617
MunI CAATTG 1 cut(s) 575
MvaI CCWGG 1 cut(s) 617
MwoI GCNNNNNNNGC 1 cut(s) 881
NdeI CATATG 1 cut(s) 406
NdeII GATC 1 cut(s) 155
NlaIII CATG 8 cut(s) 42, 110, 317, 357, 373, 423, 702, 868
NmuCI GTSAC 2 cut(s) 326, 558
NspI RCATGY 2 cut(s) 110, 317
PagI TCATGA 1 cut(s) 864
PciI ACATGT 1 cut(s) 106
PdmI GAANNNNTTC 2 cut(s) 648, 823
PfeI GAWTC 4 cut(s) 364, 373, 599, 824
PflMI CCANNNNNTGG 2 cut(s) 202, 407
PkrI GCNGC 4 cut(s) 573, 715, 763, 785
PscI ACATGT 1 cut(s) 106
PshAI GACNNNNGTC 1 cut(s) 486
PshBI ATTAAT 1 cut(s) 545
Psp6I CCWGG 1 cut(s) 615
PspGI CCWGG 1 cut(s) 615
PstI CTGCAG 3 cut(s) 586, 766, 788
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 2 cut(s) 5, 125
RsaNI GTAC 2 cut(s) 4, 124
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 4 cut(s) 572, 714, 762, 784
Sau3AI GATC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 617
SetI ASST 9 cut(s) 90, 192, 415, 434, 534, 553, 636, 785, 886
SfcI CTRYAG 3 cut(s) 582, 762, 784
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 2 cut(s) 283, 629
SmoI CTYRAG 2 cut(s) 283, 629
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 6 cut(s) 34, 542, 575, 645, 678, 684
SsiI CCGC 1 cut(s) 539
SspMI CTAG 2 cut(s) 221, 596
StyD4I CCNGG 1 cut(s) 615
TaaI ACNGT 4 cut(s) 326, 710, 776, 895
TaiI ACGT 1 cut(s) 415
TasI AATT 6 cut(s) 34, 542, 575, 645, 678, 684
TatI WGTACW 2 cut(s) 3, 123
TfiI GAWTC 4 cut(s) 364, 373, 599, 824
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TscAI CASTG 1 cut(s) 723
TseFI GTSAC 2 cut(s) 326, 558
TseI GCWGC 4 cut(s) 571, 713, 761, 783
Tsp45I GTSAC 2 cut(s) 326, 558
TspDTI ATGAA 4 cut(s) 27, 151, 309, 483
TspRI CASTG 1 cut(s) 723
Van91I CCANNNNNTGG 2 cut(s) 202, 407
VspI ATTAAT 1 cut(s) 545
XapI RAATTY 2 cut(s) 34, 645
XceI RCATGY 2 cut(s) 110, 317
XmiI GTMKAC 1 cut(s) 18
XmnI GAANNNNTTC 2 cut(s) 648, 823
XspI CTAG 2 cut(s) 221, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.