Prupe.6G319100_v2.0.a1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000234
Physical Location & Seq
Forward (+)
28287000 .. 28289340
2341 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G319100.1

Sequence Viewer

Length: 1029 bp
ATGACATTCACACTACGTAAGAAAGAAAACTTAATCGACATCCTAGTAAGATTACCTGCAAAATCCCTCGTTCGGTTTCTGTGTACATCCAAGTCATGGAGTGATTTGATTGGCGGCTCGAGTTTTGTTAGCGCACACCTTAATAGGAATGCCACAAAACATGCCCATGTCTGTCTACTTTGTCTCCACCACCCAAATTTTGAACGCCTGGTCAACCGTGATGACCCATATTTTAAAAAAGAATTTCAATGGTCTCTTTTTTCCAATGAAACATTTGAGGAGTTCTCCAAGTTAAGCCATCCCGTAGGGAGCACAGAACATTATGTGATATATGGCTCAAGCAATGGTTTAGTTTGCATATCCGATGAGATACTGAATTTCGATAGTCCTATATACATATGGAACCCATCATTATGTTGCTCTCCAATTCGGGTTCCACTCCACCCCCGGGTTAATGACTACAAGGCTGTAAGGATGATGCGTACCAACAAAAATGCCTTGGCGGTTGAGGTTTATAGTCTCAGAACAGACTCTTGGAAGATGATTGGAGCAATTCCTCCGTGGTTAAAATGCACTTGGCAGCATTATAAGGGTACATTTTTTGACGGAGTAGCATATCACGTCATTCAGAAAGGTCCTATATTCAGCATTATGTCCTTCGATTCAGGCAATGAAGAATTCGAAGAATTTATAGCACCAGATGCCATTTGCGGTACATTTGGGTTATGCATCGACATTTACAAGGAACAAATTTGTTTGCTCTTTAGATGTTATGGTTGTGAGGAGGAGGGCATGAACAAAGTTGACTTATGGGTTCTGCAAGAAAAACGGTGGAAACAATTGTGTCCTTTTATTTTTCCATTGGATGAATGGAGTGGTGCAATCGGGATTAGCATAGATGATGAACTCTTAATGGCAATAACAGATTTCGATAAGGGCGTAGCAGATCTATATTTGTGTAATTACGAATGCCAGGATGTTGAGGGCAACATAGTTGGTGACCGGCGATGGTTGGCCGGCAGTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

343

Amino Acids

39.37

Weight (kDa)

5.72

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
Acc36I ACCTGC 1 cut(s) 64
AccB7I CCANNNNNTGG 1 cut(s) 96
AccI GTMKAC 1 cut(s) 175
AciI CCGC 3 cut(s) 114, 503, 711
AcoI YGGCCR 1 cut(s) 1014
AcsI RAATTY 6 cut(s) 196, 242, 376, 677, 686, 750
AfaI GTAC 4 cut(s) 85, 484, 595, 715
AfiI CCNNNNNNNGG 4 cut(s) 72, 96, 448, 1023
AgsI TTSAA 2 cut(s) 203, 248
AjiI CACGTC 1 cut(s) 622
AjnI CCWGG 2 cut(s) 207, 972
AjuI GAANNNNNNNTTGG 2 cut(s) 517, 549
Alw21I GWGCWC 1 cut(s) 314
Alw26I GTCTC 3 cut(s) 188, 258, 524
Ama87I CYCGRG 2 cut(s) 118, 447
AoxI GGCC 1 cut(s) 1014
ApeKI GCWGC 1 cut(s) 580
ApoI RAATTY 6 cut(s) 196, 242, 376, 677, 686, 750
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 635
AsuC2I CCSGG 2 cut(s) 448, 449
AsuHPI GGTGA 1 cut(s) 1010
AsuII TTCGAA 1 cut(s) 681
AvaI CYCGRG 2 cut(s) 118, 447
AvaII GGWCC 1 cut(s) 635
Bbv12I GWGCWC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 592
BccI CCATC 3 cut(s) 306, 415, 1002
BciT130I CCWGG 2 cut(s) 209, 974
BcnI CCSGG 2 cut(s) 448, 449
BcoDI GTCTC 3 cut(s) 188, 258, 524
BfaI CTAG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 64
BglII AGATCT 1 cut(s) 946
BisI GCNGC 2 cut(s) 115, 581
BlsI GCNGC 2 cut(s) 116, 582
Bme1390I CCNGG 4 cut(s) 209, 448, 449, 974
Bme18I GGWCC 1 cut(s) 635
BmeT110I CYCGRG 2 cut(s) 118, 447
BmgBI CACGTC 1 cut(s) 622
BmgT120I GGNCC 1 cut(s) 635
BmiI GGNNCC 2 cut(s) 404, 435
BmrFI CCNGG 4 cut(s) 209, 448, 449, 974
BmsI GCATC 3 cut(s) 468, 691, 738
BplI GAGNNNNNCTC 2 cut(s) 269, 301
Bpu14I TTCGAA 1 cut(s) 681
BpuEI CTTGAG 1 cut(s) 322
BpuMI CCSGG 2 cut(s) 448, 449
BsaAI YACGTR 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 4 cut(s) 446, 447, 498, 560
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 96, 448, 1023
Bse118I RCCGGY 2 cut(s) 1002, 1016
Bse3DI GCAATG 2 cut(s) 349, 676
BseBI CCWGG 2 cut(s) 209, 974
BseDI CCNNGG 4 cut(s) 446, 447, 498, 560
BseGI GGATG 6 cut(s) 39, 86, 298, 480, 871, 982
BseLI CCNNNNNNNGG 4 cut(s) 72, 96, 448, 1023
BseMI GCAATG 2 cut(s) 349, 676
BseMII CTCAG 1 cut(s) 535
BseRI GAGGAG 3 cut(s) 293, 797, 800
BseXI GCAGC 1 cut(s) 592
BshFI GGCC 1 cut(s) 1016
BsiHKAI GWGCWC 1 cut(s) 314
BsiHKCI CYCGRG 2 cut(s) 118, 447
BsiSI CCGG 3 cut(s) 448, 1003, 1017
BslI CCNNNNNNNGG 4 cut(s) 72, 96, 448, 1023
BsmAI GTCTC 3 cut(s) 188, 258, 524
BsmI GAATGC 2 cut(s) 154, 974
BsnI GGCC 1 cut(s) 1016
Bso31I GGTCTC 1 cut(s) 258
BsoBI CYCGRG 2 cut(s) 118, 447
Bsp119I TTCGAA 1 cut(s) 681
Bsp1286I GDGCHC 1 cut(s) 314
Bsp1407I TGTACA 1 cut(s) 83
Bsp143I GATC 1 cut(s) 946
BspACI CCGC 3 cut(s) 114, 503, 711
BspANI GGCC 1 cut(s) 1016
BspCNI CTCAG 1 cut(s) 534
BspLI GGNNCC 2 cut(s) 404, 435
BspMI ACCTGC 1 cut(s) 64
BspT104I TTCGAA 1 cut(s) 681
BspTNI GGTCTC 1 cut(s) 258
BsrDI GCAATG 2 cut(s) 349, 676
BsrFI RCCGGY 2 cut(s) 1002, 1016
BsrGI TGTACA 1 cut(s) 83
BssAI RCCGGY 2 cut(s) 1002, 1016
BssECI CCNNGG 4 cut(s) 446, 447, 498, 560
BssMI GATC 1 cut(s) 946
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 2 cut(s) 209, 974
Bst4CI ACNGT 2 cut(s) 218, 831
BstAPI GCANNNNNTGC 1 cut(s) 701
BstAUI TGTACA 1 cut(s) 83
BstBAI YACGTR 1 cut(s) 17
BstBI TTCGAA 1 cut(s) 681
BstC8I GCNNGC 1 cut(s) 1018
BstDEI CTNAG 1 cut(s) 521
BstDSI CCRYGG 1 cut(s) 560
BstEII GGTNACC 1 cut(s) 998
BstF5I GGATG 6 cut(s) 39, 86, 298, 480, 871, 982
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 1 cut(s) 949
BstMAI GTCTC 3 cut(s) 188, 258, 524
BstMBI GATC 1 cut(s) 946
BstMWI GCNNNNNNNGC 1 cut(s) 701
BstNI CCWGG 2 cut(s) 209, 974
BstNSI RCATGY 1 cut(s) 164
BstPI GGTNACC 1 cut(s) 998
BstSCI CCNGG 4 cut(s) 207, 446, 447, 972
BstSNI TACGTA 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 592
BstX2I RGATCY 1 cut(s) 946
BstYI RGATCY 1 cut(s) 946
BsuRI GGCC 1 cut(s) 1016
BtgI CCRYGG 1 cut(s) 560
BtgZI GCGATG 1 cut(s) 1021
BtrI CACGTC 1 cut(s) 622
BtsCI GGATG 6 cut(s) 39, 86, 298, 480, 871, 982
BveI ACCTGC 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 1018
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 2 cut(s) 1002, 1016
Cfr13I GGNCC 1 cut(s) 635
Cfr9I CCCGGG 1 cut(s) 447
Csp6I GTAC 4 cut(s) 84, 483, 594, 714
CviAII CATG 4 cut(s) 96, 161, 167, 793
CviJI RGCY 5 cut(s) 117, 297, 336, 467, 1016
CviKI_1 RGCY 5 cut(s) 117, 297, 336, 467, 1016
CviQI GTAC 4 cut(s) 84, 483, 594, 714
DdeI CTNAG 1 cut(s) 521
DpnI GATC 1 cut(s) 948
DpnII GATC 1 cut(s) 946
DraI TTTAAA 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 1014
Eco105I TACGTA 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 635
Eco88I CYCGRG 2 cut(s) 118, 447
Eco91I GGTNACC 1 cut(s) 998
EcoO109I RGGNCCY 1 cut(s) 635
EcoO65I GGTNACC 1 cut(s) 998
EcoRI GAATTC 1 cut(s) 677
EcoRII CCWGG 2 cut(s) 207, 972
EcoT14I CCWWGG 1 cut(s) 498
EcoT22I ATGCAT 1 cut(s) 731
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 4 cut(s) 99, 164, 170, 796
FatI CATG 4 cut(s) 95, 160, 166, 792
FauNDI CATATG 1 cut(s) 398
FblI GTMKAC 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 115, 581
FokI GGATG 6 cut(s) 26, 73, 285, 487, 878, 989
Fsp4HI GCNGC 2 cut(s) 115, 581
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 133
GluI GCNGC 2 cut(s) 115, 581
HaeIII GGCC 1 cut(s) 1016
HapII CCGG 3 cut(s) 448, 1003, 1017
HhaI GCGC 1 cut(s) 134
Hin1II CATG 4 cut(s) 99, 164, 170, 796
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HincII GTYRAC 2 cut(s) 214, 805
HindII GTYRAC 2 cut(s) 214, 805
HinfI GANTC 2 cut(s) 530, 662
HpaII CCGG 3 cut(s) 448, 1003, 1017
HphI GGTGA 1 cut(s) 1010
Hpy166II GTNNAC 4 cut(s) 84, 176, 214, 805
Hpy188I TCNGA 3 cut(s) 364, 524, 630
Hpy188III TCNNGA 1 cut(s) 886
Hpy8I GTNNAC 4 cut(s) 84, 176, 214, 805
HpyAV CCTTC 1 cut(s) 667
HpyCH4III ACNGT 2 cut(s) 218, 831
HpyCH4IV ACGT 2 cut(s) 16, 621
HpyCH4V TGCA 6 cut(s) 59, 357, 573, 729, 820, 881
HpyF10VI GCNNNNNNNGC 1 cut(s) 701
HpyF3I CTNAG 1 cut(s) 521
HpySE526I ACGT 2 cut(s) 16, 621
Hsp92II CATG 4 cut(s) 99, 164, 170, 796
HspAI GCGC 1 cut(s) 132
KroI GCCGGC 1 cut(s) 1016
KroNI GCCGGC 1 cut(s) 1018
Kzo9I GATC 1 cut(s) 946
LmnI GCTCC 2 cut(s) 309, 548
LpnPI CCDG 9 cut(s) 69, 194, 221, 461, 651, 711, 959, 986, 1016
Lsp1109I GCAGC 1 cut(s) 592
LweI GCATC 3 cut(s) 468, 691, 738
MaeI CTAG 1 cut(s) 44
MaeII ACGT 2 cut(s) 16, 621
MaeIII GTNAC 1 cut(s) 998
MalI GATC 1 cut(s) 948
MboI GATC 1 cut(s) 946
MboII GAAGA 3 cut(s) 550, 686, 695
MfeI CAATTG 1 cut(s) 839
MflI RGATCY 1 cut(s) 946
MhlI GDGCHC 1 cut(s) 314
MlyI GAGTC 1 cut(s) 524
MnlI CCTC 8 cut(s) 77, 271, 502, 567, 775, 778, 781, 976
Mph1103I ATGCAT 1 cut(s) 731
MroNI GCCGGC 1 cut(s) 1016
MseI TTAA 7 cut(s) 32, 141, 234, 293, 453, 566, 911
MslI CAYNNNNRTG 2 cut(s) 165, 412
MspI CCGG 3 cut(s) 448, 1003, 1017
MspR9I CCNGG 4 cut(s) 209, 448, 449, 974
MunI CAATTG 1 cut(s) 839
Mva1269I GAATGC 2 cut(s) 154, 974
MvaI CCWGG 2 cut(s) 209, 974
MwoI GCNNNNNNNGC 1 cut(s) 701
NaeI GCCGGC 1 cut(s) 1018
NciI CCSGG 2 cut(s) 448, 449
NdeI CATATG 1 cut(s) 398
NdeII GATC 1 cut(s) 946
NgoMIV GCCGGC 1 cut(s) 1016
NlaIII CATG 4 cut(s) 99, 164, 170, 796
NlaIV GGNNCC 2 cut(s) 404, 435
NmuCI GTSAC 1 cut(s) 998
NsiI ATGCAT 1 cut(s) 731
NspI RCATGY 1 cut(s) 164
NspV TTCGAA 1 cut(s) 681
PaeR7I CTCGAG 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 936
PctI GAATGC 2 cut(s) 154, 974
PdiI GCCGGC 1 cut(s) 1018
PfeI GAWTC 1 cut(s) 662
PflMI CCANNNNNTGG 1 cut(s) 96
PkrI GCNGC 2 cut(s) 116, 582
PleI GAGTC 1 cut(s) 524
PpsI GAGTC 1 cut(s) 524
Ppu21I YACGTR 1 cut(s) 17
PpuMI RGGWCCY 1 cut(s) 635
PsiI TTATAA 1 cut(s) 588
Psp5II RGGWCCY 1 cut(s) 635
Psp6I CCWGG 2 cut(s) 207, 972
PspEI GGTNACC 1 cut(s) 998
PspGI CCWGG 2 cut(s) 207, 972
PspN4I GGNNCC 2 cut(s) 404, 435
PspPI GGNCC 1 cut(s) 635
PspPPI RGGWCCY 1 cut(s) 635
PspXI VCTCGAGB 1 cut(s) 118
PsuI RGATCY 1 cut(s) 946
RsaI GTAC 4 cut(s) 85, 484, 595, 715
RsaNI GTAC 4 cut(s) 84, 483, 594, 714
RseI CAYNNNNRTG 2 cut(s) 165, 412
SaqAI TTAA 7 cut(s) 32, 141, 234, 293, 453, 566, 911
SatI GCNGC 2 cut(s) 115, 581
Sau3AI GATC 1 cut(s) 946
Sau96I GGNCC 1 cut(s) 635
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 4 cut(s) 209, 448, 449, 974
SduI GDGCHC 1 cut(s) 314
SetI ASST 6 cut(s) 19, 58, 141, 513, 624, 637
SfaNI GCATC 3 cut(s) 468, 691, 738
Sfr274I CTCGAG 1 cut(s) 118
SfuI TTCGAA 1 cut(s) 681
SinI GGWCC 1 cut(s) 635
SlaI CTCGAG 1 cut(s) 118
SmaI CCCGGG 1 cut(s) 449
SmiMI CAYNNNNRTG 2 cut(s) 165, 412
SmlI CTYRAG 2 cut(s) 118, 337
SmoI CTYRAG 2 cut(s) 118, 337
SnaBI TACGTA 1 cut(s) 17
SsiI CCGC 3 cut(s) 114, 503, 711
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 4 cut(s) 207, 446, 447, 972
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 2 cut(s) 218, 831
TaiI ACGT 2 cut(s) 19, 624
TaqI TCGA 7 cut(s) 36, 119, 381, 660, 681, 732, 930
TatI WGTACW 1 cut(s) 83
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 1 cut(s) 662
Tru1I TTAA 7 cut(s) 32, 141, 234, 293, 453, 566, 911
Tru9I TTAA 7 cut(s) 32, 141, 234, 293, 453, 566, 911
TseFI GTSAC 1 cut(s) 998
TseI GCWGC 1 cut(s) 580
Tsp45I GTSAC 1 cut(s) 998
TspDTI ATGAA 5 cut(s) 282, 687, 809, 882, 918
TspGWI ACGGA 2 cut(s) 549, 621
TspMI CCCGGG 1 cut(s) 447
Van91I CCANNNNNTGG 1 cut(s) 96
VpaK11BI GGWCC 1 cut(s) 635
XapI RAATTY 6 cut(s) 196, 242, 376, 677, 686, 750
XceI RCATGY 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 867
XhoI CTCGAG 1 cut(s) 118
XmaI CCCGGG 1 cut(s) 447
XmiI GTMKAC 1 cut(s) 175
XspI CTAG 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.