Rroxscaffold_5G00333360

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000234
Physical Location & Seq
Forward (+)
795496 .. 797127
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00333360.1

Sequence Viewer

Length: 915 bp
ATGAGAAACAAACGCAGTGAGGATGTTGCTAGTTCCATCACTGAAGATCCCCACCTAGAAATCTTAGTAAGGCTCCCAGTAAAATCTGTCATTCAGTTTCAATGTGTATGCAAGCGGTGGACGGGTTTGATTGGCAACTCAAGTTTTGTTACAACACATATCAGACAACATTCCCATACCCATCTAATTACGGATGACCGCTCAAGGTTTGACCAAGGTGAGCTTTGCTACTCTCTTTTTCCTTTTGAAAGATTTGAGCAATCCCTGGAGTTAAAACCTCCCTTTCATCCCCAACTAGACTATAAATCCCGACTAGACTACTTCAAGATATATGGTTCAACGAATGGTTTCTTGTGTCTTGCTGGGAATGTAATGGATTCAAATAGCCCTATATACATATGGAACCCCTCTGTTAGGAAATTCAGTATTCTTCCACAACCAACATTAGATCATTATTGTGTGGACTATTTTCCCAAGCATGTTGATATGCCTCTCTTATTTGGATTCCACCCAGGTCTAAATGACTATAAGGTAATAAGGATGCTGCTGCCTGGTTCCATCAAAATGGAGGTTTATACTCTTAGCACAAATTCTTGGACGATTATTCAAGTCATGCCACCTTGGCTCAATACTATGAAGTTTTCTACTCGATCTGAATTTTGGAATGGAATGGAATATTGGCTTGCTACGAGAGATTTAATGGTTAGGGTTGTGTTGTGTGATACTAATAGTGAAGAATTTGAAGAAGTGGTGATCCTAATTACTATTTTGAGTGATGATTGGGATGCATATATCAAAGTGATGATTGGGATATGCATAAGACAACACTTGGTTGGACCAACTGCTCAAGAGGGATTTCCAACAACTGCAGGAGGGGTTTCATGGCTTGCAAAGAATCTAAATTACAGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

304

Amino Acids

35.26

Weight (kDa)

6.36

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 83 - 253 5.4e-09 F-box associated beta propeller domain
FBA_3 PF08268 101 - 250 6.1e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 201
AciI CCGC 2 cut(s) 115, 199
AclWI GGATC 2 cut(s) 41, 748
AcsI RAATTY 4 cut(s) 419, 589, 656, 737
AcuI CTGAAG 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 414
AgsI TTSAA 7 cut(s) 101, 248, 325, 339, 381, 608, 743
AjnI CCWGG 3 cut(s) 264, 511, 550
AjuI GAANNNNNNNTTGG 2 cut(s) 661, 693
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
AlwI GGATC 2 cut(s) 41, 748
ApeKI GCWGC 2 cut(s) 544, 547
ApoI RAATTY 4 cut(s) 419, 589, 656, 737
Asp700I GAANNNNTTC 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 836
AsuHPI GGTGA 2 cut(s) 230, 763
AvaII GGWCC 1 cut(s) 836
BbvI GCAGC 2 cut(s) 531, 534
BccI CCATC 3 cut(s) 44, 189, 566
BciT130I CCWGG 3 cut(s) 266, 513, 552
BfaI CTAG 4 cut(s) 30, 56, 296, 314
BfmI CTRYAG 1 cut(s) 867
BglI GCCNNNNNGGC 1 cut(s) 622
BisI GCNGC 2 cut(s) 545, 548
BlsI GCNGC 2 cut(s) 546, 549
Bme1390I CCNGG 3 cut(s) 266, 513, 552
Bme18I GGWCC 1 cut(s) 836
BmgT120I GGNCC 1 cut(s) 836
BmiI GGNNCC 3 cut(s) 74, 404, 556
BmrFI CCNGG 3 cut(s) 266, 513, 552
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 531, 775
BmuI ACTGGG 1 cut(s) 71
BpmI CTGGAG 1 cut(s) 287
BpuEI CTTGAG 3 cut(s) 124, 187, 831
BsaJI CCNNGG 4 cut(s) 214, 264, 511, 620
Bsc4I CCNNNNNNNGG 1 cut(s) 414
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 3 cut(s) 266, 513, 552
BseDI CCNNGG 4 cut(s) 214, 264, 511, 620
BseGI GGATG 5 cut(s) 28, 199, 286, 546, 790
BseLI CCNNNNNNNGG 1 cut(s) 414
BseNI ACTGG 1 cut(s) 77
BseXI GCAGC 2 cut(s) 531, 534
BseYI CCCAGC 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 414
Bsp143I GATC 4 cut(s) 46, 448, 650, 753
BspACI CCGC 2 cut(s) 115, 199
BspLI GGNNCC 3 cut(s) 74, 404, 556
BspMAI CTGCAG 1 cut(s) 871
BspPI GGATC 2 cut(s) 41, 748
BsrBI CCGCTC 1 cut(s) 201
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 4 cut(s) 214, 264, 511, 620
BssMI GATC 4 cut(s) 46, 448, 650, 753
BssT1I CCWWGG 2 cut(s) 214, 620
Bst2UI CCWGG 3 cut(s) 266, 513, 552
BstC8I GCNNGC 3 cut(s) 113, 684, 888
BstDEI CTNAG 2 cut(s) 64, 581
BstENI CCTNNNNNAGG 1 cut(s) 412
BstF5I GGATG 5 cut(s) 28, 199, 286, 546, 790
BstKTI GATC 4 cut(s) 49, 451, 653, 756
BstMBI GATC 4 cut(s) 46, 448, 650, 753
BstMWI GCNNNNNNNGC 1 cut(s) 622
BstNI CCWGG 3 cut(s) 266, 513, 552
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 3 cut(s) 264, 511, 550
BstSFI CTRYAG 1 cut(s) 867
BstV1I GCAGC 2 cut(s) 531, 534
BstX2I RGATCY 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 565
BstYI RGATCY 1 cut(s) 46
BtsCI GGATG 5 cut(s) 28, 199, 286, 546, 790
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 2 cut(s) 22, 39
Cac8I GCNNGC 3 cut(s) 113, 684, 888
Cfr13I GGNCC 1 cut(s) 836
CviAII CATG 4 cut(s) 479, 613, 882, 912
CviJI RGCY 6 cut(s) 73, 223, 387, 625, 682, 886
CviKI_1 RGCY 6 cut(s) 73, 223, 387, 625, 682, 886
DdeI CTNAG 2 cut(s) 64, 581
DpnI GATC 4 cut(s) 48, 450, 652, 755
DpnII GATC 4 cut(s) 46, 448, 650, 753
Eco130I CCWWGG 2 cut(s) 214, 620
Eco47I GGWCC 1 cut(s) 836
Eco57I CTGAAG 1 cut(s) 63
EcoNI CCTNNNNNAGG 1 cut(s) 412
EcoRII CCWGG 3 cut(s) 264, 511, 550
EcoT14I CCWWGG 2 cut(s) 214, 620
EcoT22I ATGCAT 2 cut(s) 790, 818
ErhI CCWWGG 2 cut(s) 214, 620
FaeI CATG 4 cut(s) 482, 616, 885, 915
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 4 cut(s) 478, 612, 881, 911
FauNDI CATATG 1 cut(s) 398
Fnu4HI GCNGC 2 cut(s) 545, 548
FokI GGATG 5 cut(s) 35, 206, 273, 553, 797
Fsp4HI GCNGC 2 cut(s) 545, 548
FspBI CTAG 4 cut(s) 30, 56, 296, 314
GluI GCNGC 2 cut(s) 545, 548
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 287
Hin1II CATG 4 cut(s) 482, 616, 885, 915
HinfI GANTC 3 cut(s) 377, 504, 895
HphI GGTGA 2 cut(s) 230, 763
Hpy166II GTNNAC 2 cut(s) 120, 463
Hpy188I TCNGA 2 cut(s) 164, 655
Hpy188III TCNNGA 3 cut(s) 309, 325, 848
Hpy8I GTNNAC 2 cut(s) 120, 463
HpyCH4V TGCA 5 cut(s) 111, 788, 816, 869, 890
HpyF10VI GCNNNNNNNGC 1 cut(s) 622
HpyF3I CTNAG 2 cut(s) 64, 581
Hsp92II CATG 4 cut(s) 482, 616, 885, 915
Kzo9I GATC 4 cut(s) 46, 448, 650, 753
LmnI GCTCC 1 cut(s) 78
Lsp1109I GCAGC 2 cut(s) 531, 534
LweI GCATC 2 cut(s) 531, 775
MaeI CTAG 4 cut(s) 30, 56, 296, 314
MaeIII GTNAC 1 cut(s) 148
MalI GATC 4 cut(s) 48, 450, 652, 755
MbiI CCGCTC 1 cut(s) 201
MboI GATC 4 cut(s) 46, 448, 650, 753
MboII GAAGA 4 cut(s) 56, 422, 746, 755
MflI RGATCY 1 cut(s) 46
MluCI AATT 7 cut(s) 186, 419, 589, 656, 737, 759, 901
MmeI TCCRAC 2 cut(s) 814, 884
MnlI CCTC 7 cut(s) 13, 288, 418, 501, 562, 844, 866
Mph1103I ATGCAT 2 cut(s) 790, 818
MroXI GAANNNNTTC 1 cut(s) 347
MseI TTAA 2 cut(s) 272, 698
MslI CAYNNNNRTG 2 cut(s) 456, 563
MspR9I CCNGG 3 cut(s) 266, 513, 552
MvaI CCWGG 3 cut(s) 266, 513, 552
MwoI GCNNNNNNNGC 1 cut(s) 622
NdeI CATATG 1 cut(s) 398
NdeII GATC 4 cut(s) 46, 448, 650, 753
NlaIII CATG 4 cut(s) 482, 616, 885, 915
NlaIV GGNNCC 3 cut(s) 74, 404, 556
NsiI ATGCAT 2 cut(s) 790, 818
NspI RCATGY 1 cut(s) 482
PdmI GAANNNNTTC 1 cut(s) 347
PfeI GAWTC 3 cut(s) 377, 504, 895
PkrI GCNGC 2 cut(s) 546, 549
Psp6I CCWGG 3 cut(s) 264, 511, 550
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 3 cut(s) 264, 511, 550
PspN4I GGNNCC 3 cut(s) 74, 404, 556
PspPI GGNCC 1 cut(s) 836
PstI CTGCAG 1 cut(s) 871
PsuI RGATCY 1 cut(s) 46
RseI CAYNNNNRTG 2 cut(s) 456, 563
SaqAI TTAA 2 cut(s) 272, 698
SatI GCNGC 2 cut(s) 545, 548
Sau3AI GATC 4 cut(s) 46, 448, 650, 753
Sau96I GGNCC 1 cut(s) 836
ScrFI CCNGG 3 cut(s) 266, 513, 552
SetI ASST 9 cut(s) 57, 209, 220, 225, 280, 517, 534, 573, 622
SfaNI GCATC 2 cut(s) 531, 775
SfcI CTRYAG 1 cut(s) 867
SinI GGWCC 1 cut(s) 836
SmiMI CAYNNNNRTG 2 cut(s) 456, 563
SmlI CTYRAG 3 cut(s) 139, 202, 846
SmoI CTYRAG 3 cut(s) 139, 202, 846
Sse9I AATT 7 cut(s) 186, 419, 589, 656, 737, 759, 901
SsiI CCGC 2 cut(s) 115, 199
SspI AATATT 1 cut(s) 677
SspMI CTAG 4 cut(s) 30, 56, 296, 314
StyD4I CCNGG 3 cut(s) 264, 511, 550
StyI CCWWGG 2 cut(s) 214, 620
TaqI TCGA 1 cut(s) 649
TasI AATT 7 cut(s) 186, 419, 589, 656, 737, 759, 901
TfiI GAWTC 3 cut(s) 377, 504, 895
Tru1I TTAA 2 cut(s) 272, 698
Tru9I TTAA 2 cut(s) 272, 698
TscAI CASTG 2 cut(s) 22, 46
TseI GCWGC 2 cut(s) 544, 547
TspDTI ATGAA 3 cut(s) 275, 650, 870
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 2 cut(s) 22, 46
VpaK11BI GGWCC 1 cut(s) 836
XagI CCTNNNNNAGG 1 cut(s) 412
XapI RAATTY 4 cut(s) 419, 589, 656, 737
XceI RCATGY 1 cut(s) 482
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 4 cut(s) 30, 56, 296, 314
Zsp2I ATGCAT 2 cut(s) 790, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.