Prupe.3G013500_v2.0.a1

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000234
Physical Location & Seq
Forward (+)
950524 .. 951920
1397 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G013500.1

Sequence Viewer

Length: 942 bp
ATGTCAACAACCCTCATGTATGAAAGGAGACGAAGACGAATAAGAGACGGACAAGTGTTGCCCGAAGAAATCTTTTTTAAAATCCTTGAAAGATTACCCGTGAAATCTCTTTTGCAGTGCGGATGTGTTTGCCAATCTCGGAAAACTTTGATTAGAAGCCCTGATTTCATAAGCGCCCATCTCGAAACAAGTGTCATGAAAAAAGCATGTGATTATCTACTTATCGAGACCAGCAAAAGAGATTGCTTTTCAATCTGTTGTGCTGAAACATTTTCCAAGTGTTTGGATGTAAAGGTTCCTTTGTCCCATTTTTATGCCGTTATTGGTTCTTGCAATGGATTGCTTTGCATGTCGGATTTTATTTCTATATATCTATGGAATCCCTCCATCAGAAAAATCAAGAGACTTCCCATAGGCGTCATTCAAGACACAACCTATGTCGTTGCTATCGGCTTCGGATTTCATCGTAGCAAAAATGACTATAAGGTTGTGAGGGTGATGAGGTTTGAACGCAAAGAGTTTGAGGTTGAGGTTTACAGCCTTAGATTGAATTCTTGGAGAAAAATTAGTGTAGTTCCTCCTGATGTTAGTGTTTCCGAAGACAAATGTGTATTCTTGAATGGAGTTGTGTATTGGAGTACAAGAGAGCCTTTTCAAGGTTCCACCTTCATTCTTTCTTTCGATTTTGGCAGTGAGGAGTTTAGAAGGATCATGCTACCTCATGAAGTAAGGATCATGCTACATCATGTACGCACAAGTTTCCGACACATTCATATTCGAGTGTTTAAGAAATCATTTCCTTCTTCCATCGACGAAGACAAGATGGGCAATCGGGTTGGTTTTATGACGTATGGGTTCTTGAAATGGATACTCAGGAAAAGTCAGATTTCTTATGGTTATGACAGGTACTTTTTCGAAAGGTCCATATTTGGTTTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

314

Amino Acids

36.87

Weight (kDa)

9.49

Isoelectric Point (pI)

56.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 120
AclWI GGATC 2 cut(s) 716, 740
AcsI RAATTY 1 cut(s) 550
AcyI GRCGYC 1 cut(s) 417
AfaI GTAC 3 cut(s) 640, 750, 908
AfiI CCNNNNNNNGG 1 cut(s) 656
AgsI TTSAA 8 cut(s) 89, 252, 425, 509, 550, 619, 656, 862
Alw26I GTCTC 4 cut(s) 22, 39, 221, 397
AlwI GGATC 2 cut(s) 716, 740
ApoI RAATTY 1 cut(s) 550
ArsI GACNNNNNNTTYG 2 cut(s) 177, 209
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 921
AsuHPI GGTGA 1 cut(s) 508
AsuII TTCGAA 1 cut(s) 915
AvaII GGWCC 1 cut(s) 921
BbsI GAAGAC 3 cut(s) 40, 606, 822
BccI CCATC 4 cut(s) 186, 395, 815, 817
BceAI ACGGC 1 cut(s) 302
BciVI GTATCC 1 cut(s) 861
BcoDI GTCTC 4 cut(s) 22, 39, 221, 397
BfoI RGCGCY 1 cut(s) 177
BfuI GTATCC 1 cut(s) 861
Bme18I GGWCC 1 cut(s) 921
BmgT120I GGNCC 1 cut(s) 921
BmiI GGNNCC 2 cut(s) 297, 661
BpiI GAAGAC 3 cut(s) 40, 606, 822
Bpu14I TTCGAA 1 cut(s) 915
BsaHI GRCGYC 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 656
Bse3DI GCAATG 1 cut(s) 340
BseGI GGATG 2 cut(s) 128, 292
BseLI CCNNNNNNNGG 1 cut(s) 656
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 1 cut(s) 886
BseRI GAGGAG 1 cut(s) 710
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 656
BsmAI GTCTC 4 cut(s) 22, 39, 221, 397
BsmBI CGTCTC 2 cut(s) 22, 39
BsmFI GGGAC 1 cut(s) 289
Bso31I GGTCTC 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 915
Bsp143I GATC 2 cut(s) 708, 732
BspACI CCGC 1 cut(s) 120
BspCNI CTCAG 1 cut(s) 885
BspHI TCATGA 2 cut(s) 195, 721
BspLI GGNNCC 2 cut(s) 297, 661
BspPI GGATC 2 cut(s) 716, 740
BspT104I TTCGAA 1 cut(s) 915
BspTNI GGTCTC 1 cut(s) 221
BsrDI GCAATG 1 cut(s) 340
BssMI GATC 2 cut(s) 708, 732
BssNI GRCGYC 1 cut(s) 417
BstACI GRCGYC 1 cut(s) 417
BstBI TTCGAA 1 cut(s) 915
BstDEI CTNAG 2 cut(s) 542, 872
BstENI CCTNNNNNAGG 1 cut(s) 654
BstF5I GGATG 2 cut(s) 128, 292
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 2 cut(s) 711, 735
BstMAI GTCTC 4 cut(s) 22, 39, 221, 397
BstMBI GATC 2 cut(s) 708, 732
BstNSI RCATGY 2 cut(s) 210, 352
BstV2I GAAGAC 3 cut(s) 40, 606, 822
BstXI CCANNNNNNTGG 1 cut(s) 283
BsuI GTATCC 1 cut(s) 861
BtsCI GGATG 2 cut(s) 128, 292
BtsI GCAGTG 2 cut(s) 122, 697
BtsIMutI CAGTG 2 cut(s) 122, 697
CciI TCATGA 2 cut(s) 195, 721
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 921
CseI GACGC 1 cut(s) 406
Csp6I GTAC 3 cut(s) 639, 749, 907
CviAII CATG 8 cut(s) 16, 196, 207, 349, 712, 722, 736, 746
CviJI RGCY 4 cut(s) 159, 453, 540, 649
CviKI_1 RGCY 4 cut(s) 159, 453, 540, 649
CviQI GTAC 3 cut(s) 639, 749, 907
DdeI CTNAG 2 cut(s) 542, 872
DpnI GATC 2 cut(s) 710, 734
DpnII GATC 2 cut(s) 708, 732
DraI TTTAAA 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 921
EcoNI CCTNNNNNAGG 1 cut(s) 654
EcoRI GAATTC 1 cut(s) 550
Esp3I CGTCTC 2 cut(s) 22, 39
FaeI CATG 8 cut(s) 19, 199, 210, 352, 715, 725, 739, 749
FalI AAGNNNNNCTT 2 cut(s) 634, 666
FaqI GGGAC 1 cut(s) 289
FatI CATG 8 cut(s) 15, 195, 206, 348, 711, 721, 735, 745
FokI GGATG 2 cut(s) 135, 299
GlaI GCGC 1 cut(s) 175
HaeII RGCGCY 1 cut(s) 177
HgaI GACGC 1 cut(s) 406
HhaI GCGC 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 8 cut(s) 19, 199, 210, 352, 715, 725, 739, 749
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 379
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 2 cut(s) 6, 535
Hpy188I TCNGA 7 cut(s) 141, 355, 392, 458, 598, 764, 885
Hpy8I GTNNAC 2 cut(s) 6, 535
Hpy99I CGWCG 1 cut(s) 815
HpyAV CCTTC 3 cut(s) 676, 699, 810
HpyCH4IV ACGT 1 cut(s) 848
HpyCH4V TGCA 3 cut(s) 115, 333, 348
HpyF3I CTNAG 2 cut(s) 542, 872
HpySE526I ACGT 1 cut(s) 848
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 8 cut(s) 19, 199, 210, 352, 715, 725, 739, 749
HspAI GCGC 1 cut(s) 174
Kzo9I GATC 2 cut(s) 708, 732
LpnPI CCDG 5 cut(s) 174, 244, 594, 859, 889
MaeII ACGT 1 cut(s) 848
MalI GATC 2 cut(s) 710, 734
MboI GATC 2 cut(s) 708, 732
MboII GAAGA 5 cut(s) 45, 77, 611, 795, 827
MluCI AATT 2 cut(s) 550, 564
MmeI TCCRAC 2 cut(s) 333, 787
MnlI CCTC 9 cut(s) 23, 394, 486, 495, 517, 523, 588, 688, 729
MseI TTAA 2 cut(s) 78, 786
MslI CAYNNNNRTG 1 cut(s) 312
NdeII GATC 2 cut(s) 708, 732
NlaIII CATG 8 cut(s) 19, 199, 210, 352, 715, 725, 739, 749
NlaIV GGNNCC 2 cut(s) 297, 661
NspI RCATGY 2 cut(s) 210, 352
NspV TTCGAA 1 cut(s) 915
PagI TCATGA 2 cut(s) 195, 721
PfeI GAWTC 1 cut(s) 379
PspN4I GGNNCC 2 cut(s) 297, 661
PspPI GGNCC 1 cut(s) 921
RsaI GTAC 3 cut(s) 640, 750, 908
RsaNI GTAC 3 cut(s) 639, 749, 907
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 2 cut(s) 78, 786
Sau3AI GATC 2 cut(s) 708, 732
Sau96I GGNCC 1 cut(s) 921
SfuI TTCGAA 1 cut(s) 915
SinI GGWCC 1 cut(s) 921
SmiMI CAYNNNNRTG 1 cut(s) 312
Sse9I AATT 2 cut(s) 550, 564
SsiI CCGC 1 cut(s) 120
TaiI ACGT 1 cut(s) 851
TaqI TCGA 6 cut(s) 183, 225, 681, 778, 810, 915
TasI AATT 2 cut(s) 550, 564
TatI WGTACW 1 cut(s) 638
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 2 cut(s) 78, 786
Tru9I TTAA 2 cut(s) 78, 786
TscAI CASTG 2 cut(s) 122, 697
TspDTI ATGAA 7 cut(s) 36, 157, 212, 452, 658, 738, 761
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 2 cut(s) 122, 697
VpaK11BI GGWCC 1 cut(s) 921
XagI CCTNNNNNAGG 1 cut(s) 654
XapI RAATTY 1 cut(s) 550
XceI RCATGY 2 cut(s) 210, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.