RchiOBHm_Chr2g0143641

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000234
Physical Location & Seq
Reverse (-)
61309138 .. 61310517
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51373

Sequence Viewer

Length: 1122 bp
ATGACGTCCACAATTTGTAAGAAAGAAATCTTGATGGACATCCTAGTAAGACTACCTGCAAAAACCCTAATGCGGTTTTTATGTGCATGCAAAGCATGGAGTGATTTGATTAGCAGCCCAGATTTTGTCTCTACAAATCTTAACACAAATATCACAAAACGCAGAAATATGCATCTACTCTGCCTCCACCACCCGGATTTTAAACGGGTGGTCGATTTGGAGGATCCATATGTTAAACAAGCTCTTCAATGGTCTTTCTTTCACTATGAAACATTTGAGCAGGGCTTGGGGTTAAGCCATCCCTCAGGGAGCACAGAACATTATGTGATGTATGGCTCAAGCAATGGATTAGTTTGCATTTCGAATCCGGACGAAGTTTTGAATAGCAGGAGTCCTATAATCATATGGAACCCGTCCATTAAGAAATTTAAGACGCTTCCATCGACCACAAACAATAAATTTCGCTATATGTCCCTCCAATTTGGGTTCCATCCCGGGGTTAATGACTACAAGGTAGTAAGAATGATGCGGATCAACAAGGATGCCTTCGCAGTAGAAGTTTTTTCTCTTAGCACCAACTCTTGGAAGATGATCGAAGAAATTCCTCCATGGTTAAAATGCAATTTTAAATATCTTGAAGGTACGTTCATAAATGGAGTAGCCTACCGAATTCTTGAGAAAGGTTTTATGTATAGCCTCATGTCCTTCGATTCGGGCAGTGAAGAATTCAAAGAATTCATACTACCAGAGTCCGTCATCAGTTCACATAATTTACATATCTACCCTTTCGAGGAAAAGCCTTGCTTGATTTTTCACTGGTATATTTCTGATGAGGAGGGCTTTGATAGAGGTGAGTTCTTTGTTTTTCAAGACAAACGTTGGAAACGTATGCACCCTTTTTACTATCCTTCGCATTGTTATCATACGATCGGGGTTAGTATAGATAATGAAGTGGTAATGGAGTCAAGAGACTACTGTAATGGTGTAGCAGATTTGTTTTTGGTGAACTACGAAACCAGGGAAGTTCGTGAAACAGGAATTAAGTTGGCCATCACGAGAGTTGGCTATAACGAACATTTCTATGTATTTACGTACGCAGAAAGTTTGGTATTACCGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

373

Amino Acids

43.67

Weight (kDa)

6.4

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 104 - 353 5.5e-22 F-box associated beta propeller domain
FBA_1 PF07734 114 - 249 4.9e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 64
AccB7I CCANNNNNTGG 1 cut(s) 582
AccIII TCCGGA 1 cut(s) 367
AciI CCGC 2 cut(s) 73, 529
AclI AACGTT 1 cut(s) 877
AclWI GGATC 3 cut(s) 218, 231, 539
AcoI YGGCCR 1 cut(s) 1047
AcsI RAATTY 6 cut(s) 425, 458, 600, 669, 725, 734
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 643, 1094
AfiI CCNNNNNNNGG 5 cut(s) 72, 193, 496, 582, 790
AgsI TTSAA 5 cut(s) 248, 382, 638, 730, 869
AjnI CCWGG 1 cut(s) 1016
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw21I GWGCWC 1 cut(s) 314
Alw26I GTCTC 2 cut(s) 133, 963
AlwI GGATC 3 cut(s) 218, 231, 539
Ama87I CYCGRG 1 cut(s) 494
Aor13HI TCCGGA 1 cut(s) 367
AoxI GGCC 1 cut(s) 1047
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 6 cut(s) 425, 458, 600, 669, 725, 734
Asp700I GAANNNNTTC 1 cut(s) 600
AsuC2I CCSGG 3 cut(s) 194, 495, 496
AsuHPI GGTGA 2 cut(s) 863, 1015
AsuII TTCGAA 1 cut(s) 362
AvaI CYCGRG 1 cut(s) 494
AxyI CCTNAGG 1 cut(s) 304
BalI TGGCCA 1 cut(s) 1049
BamHI GGATCC 1 cut(s) 223
BauI CACGAG 1 cut(s) 1054
Bbv12I GWGCWC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 126
BccI CCATC 5 cut(s) 28, 306, 448, 498, 1058
BciT130I CCWGG 1 cut(s) 1018
BcnI CCSGG 3 cut(s) 194, 495, 496
BcoDI GTCTC 2 cut(s) 133, 963
BfaI CTAG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 64
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 4 cut(s) 194, 495, 496, 1018
BmeT110I CYCGRG 1 cut(s) 494
BmiI GGNNCC 3 cut(s) 225, 410, 488
BmrFI CCNGG 4 cut(s) 194, 495, 496, 1018
BmsI GCATC 3 cut(s) 181, 516, 532
Bpu14I TTCGAA 1 cut(s) 362
BpuEI CTTGAG 2 cut(s) 322, 695
BpuMI CCSGG 3 cut(s) 194, 495, 496
BsaAI YACGTR 1 cut(s) 1092
BsaBI GATNNNNATC 2 cut(s) 38, 530
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 494, 495, 608, 1017
BsaWI WCCGGW 1 cut(s) 367
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 5 cut(s) 72, 193, 496, 582, 790
Bse1I ACTGG 1 cut(s) 821
Bse21I CCTNAGG 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 349
Bse8I GATNNNNATC 2 cut(s) 38, 530
BseAI TCCGGA 1 cut(s) 367
BseBI CCWGG 1 cut(s) 1018
BseDI CCNNGG 4 cut(s) 494, 495, 608, 1017
BseGI GGATG 4 cut(s) 39, 298, 490, 547
BseJI GATNNNNATC 2 cut(s) 38, 530
BseLI CCNNNNNNNGG 5 cut(s) 72, 193, 496, 582, 790
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 821
BseRI GAGGAG 1 cut(s) 848
BseXI GCAGC 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 930
BshFI GGCC 1 cut(s) 1049
BsiEI CGRYCG 1 cut(s) 930
BsiHKAI GWGCWC 1 cut(s) 314
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 3 cut(s) 194, 368, 495
BsiWI CGTACG 1 cut(s) 1092
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 5 cut(s) 72, 193, 496, 582, 790
BsmAI GTCTC 2 cut(s) 133, 963
BsmFI GGGAC 1 cut(s) 457
BsnI GGCC 1 cut(s) 1049
BsoBI CYCGRG 1 cut(s) 494
Bsp119I TTCGAA 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 314
Bsp13I TCCGGA 1 cut(s) 367
Bsp143I GATC 4 cut(s) 223, 531, 591, 927
Bsp19I CCATGG 1 cut(s) 608
BspACI CCGC 2 cut(s) 73, 529
BspANI GGCC 1 cut(s) 1049
BspCNI CTCAG 1 cut(s) 317
BspEI TCCGGA 1 cut(s) 367
BspLI GGNNCC 3 cut(s) 225, 410, 488
BspMI ACCTGC 1 cut(s) 64
BspPI GGATC 3 cut(s) 218, 231, 539
BspQI GCTCTTC 1 cut(s) 249
BspT104I TTCGAA 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 349
BsrI ACTGG 1 cut(s) 821
BssECI CCNNGG 4 cut(s) 494, 495, 608, 1017
BssMI GATC 4 cut(s) 223, 531, 591, 927
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 1054
BssT1I CCWWGG 1 cut(s) 608
Bst2BI CACGAG 1 cut(s) 1054
Bst2UI CCWGG 1 cut(s) 1018
Bst4CI ACNGT 1 cut(s) 977
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 1092
BstBI TTCGAA 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 304, 569
BstDSI CCRYGG 1 cut(s) 608
BstF5I GGATG 4 cut(s) 39, 298, 490, 547
BstKTI GATC 4 cut(s) 226, 534, 594, 930
BstMAI GTCTC 2 cut(s) 133, 963
BstMBI GATC 4 cut(s) 223, 531, 591, 927
BstMCI CGRYCG 1 cut(s) 930
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 1018
BstNSI RCATGY 1 cut(s) 90
BstSCI CCNGG 4 cut(s) 192, 493, 494, 1016
BstSNI TACGTA 1 cut(s) 1092
BstV1I GCAGC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
Bsu36I CCTNAGG 1 cut(s) 304
BsuRI GGCC 1 cut(s) 1049
BtgI CCRYGG 1 cut(s) 608
BtsCI GGATG 4 cut(s) 39, 298, 490, 547
BtsI GCAGTG 1 cut(s) 724
BtsIMutI CAGTG 2 cut(s) 724, 814
BveI ACCTGC 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 88
Cfr9I CCCGGG 1 cut(s) 494
CseI GACGC 1 cut(s) 442
Csp6I GTAC 2 cut(s) 642, 1093
CviAII CATG 4 cut(s) 87, 96, 609, 700
CviQI GTAC 2 cut(s) 642, 1093
DdeI CTNAG 2 cut(s) 304, 569
DpnI GATC 4 cut(s) 225, 533, 593, 929
DpnII GATC 4 cut(s) 223, 531, 591, 927
DraI TTTAAA 2 cut(s) 202, 628
EaeI YGGCCR 1 cut(s) 1047
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco105I TACGTA 1 cut(s) 1092
Eco130I CCWWGG 1 cut(s) 608
Eco81I CCTNAGG 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 494
EcoRI GAATTC 3 cut(s) 669, 725, 734
EcoRII CCWGG 1 cut(s) 1016
EcoT14I CCWWGG 1 cut(s) 608
EcoT22I ATGCAT 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 4 cut(s) 90, 99, 612, 703
FalI AAGNNNNNCTT 4 cut(s) 530, 562, 788, 820
FaqI GGGAC 1 cut(s) 457
FatI CATG 4 cut(s) 86, 95, 608, 699
FauNDI CATATG 2 cut(s) 229, 404
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 4 cut(s) 26, 285, 477, 554
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 1 cut(s) 44
GluI GCNGC 1 cut(s) 115
HaeIII GGCC 1 cut(s) 1049
HapII CCGG 3 cut(s) 194, 368, 495
HgaI GACGC 1 cut(s) 442
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 90, 99, 612, 703
HinfI GANTC 5 cut(s) 364, 391, 710, 749, 962
HpaII CCGG 3 cut(s) 194, 368, 495
HphI GGTGA 2 cut(s) 863, 1015
Hpy166II GTNNAC 3 cut(s) 9, 764, 1006
Hpy188I TCNGA 1 cut(s) 829
Hpy188III TCNNGA 8 cut(s) 31, 368, 635, 674, 869, 966, 1028, 1054
Hpy8I GTNNAC 3 cut(s) 9, 764, 1006
HpyAV CCTTC 4 cut(s) 556, 632, 715, 918
HpyCH4III ACNGT 1 cut(s) 977
HpyCH4IV ACGT 5 cut(s) 5, 644, 877, 886, 1091
HpyCH4V TGCA 7 cut(s) 59, 86, 90, 172, 357, 621, 892
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 304, 569
HpySE526I ACGT 5 cut(s) 5, 644, 877, 886, 1091
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 90, 99, 612, 703
Kpn2I TCCGGA 1 cut(s) 367
Kzo9I GATC 4 cut(s) 223, 531, 591, 927
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 309
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 3 cut(s) 181, 516, 532
MaeI CTAG 1 cut(s) 44
MaeII ACGT 5 cut(s) 5, 644, 877, 886, 1091
MalI GATC 4 cut(s) 225, 533, 593, 929
MboI GATC 4 cut(s) 223, 531, 591, 927
MboII GAAGA 4 cut(s) 236, 598, 608, 734
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 314
MlsI TGGCCA 1 cut(s) 1049
MluNI TGGCCA 1 cut(s) 1049
MlyI GAGTC 3 cut(s) 400, 758, 971
MmeI TCCRAC 1 cut(s) 860
Mox20I TGGCCA 1 cut(s) 1049
Mph1103I ATGCAT 1 cut(s) 174
MroI TCCGGA 1 cut(s) 367
MroXI GAANNNNTTC 1 cut(s) 600
MscI TGGCCA 1 cut(s) 1049
MslI CAYNNNNRTG 1 cut(s) 1080
Msp20I TGGCCA 1 cut(s) 1049
MspI CCGG 3 cut(s) 194, 368, 495
MspR9I CCNGG 4 cut(s) 194, 495, 496, 1018
MvaI CCWGG 1 cut(s) 1018
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 3 cut(s) 194, 495, 496
NcoI CCATGG 1 cut(s) 608
NdeI CATATG 2 cut(s) 229, 404
NdeII GATC 4 cut(s) 223, 531, 591, 927
NlaIII CATG 4 cut(s) 90, 99, 612, 703
NlaIV GGNNCC 3 cut(s) 225, 410, 488
NsiI ATGCAT 1 cut(s) 174
NspI RCATGY 1 cut(s) 90
NspV TTCGAA 1 cut(s) 362
PaeI GCATGC 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 249
PcsI WCGNNNNNNNCGW 2 cut(s) 440, 883
PdmI GAANNNNTTC 1 cut(s) 600
PfeI GAWTC 2 cut(s) 364, 710
Pfl23II CGTACG 1 cut(s) 1092
PflMI CCANNNNNTGG 1 cut(s) 582
PkrI GCNGC 1 cut(s) 116
Ple19I CGATCG 1 cut(s) 930
PleI GAGTC 3 cut(s) 399, 757, 970
PpsI GAGTC 3 cut(s) 399, 757, 970
Ppu21I YACGTR 1 cut(s) 1092
Psp1406I AACGTT 1 cut(s) 877
Psp6I CCWGG 1 cut(s) 1016
PspGI CCWGG 1 cut(s) 1016
PspLI CGTACG 1 cut(s) 1092
PspN4I GGNNCC 3 cut(s) 225, 410, 488
PsuI RGATCY 1 cut(s) 223
PvuI CGATCG 1 cut(s) 930
RsaI GTAC 2 cut(s) 643, 1094
RsaNI GTAC 2 cut(s) 642, 1093
RseI CAYNNNNRTG 1 cut(s) 1080
SapI GCTCTTC 1 cut(s) 249
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 4 cut(s) 223, 531, 591, 927
SchI GAGTC 3 cut(s) 400, 758, 971
ScrFI CCNGG 4 cut(s) 194, 495, 496, 1018
SduI GDGCHC 1 cut(s) 314
SfaNI GCATC 3 cut(s) 181, 516, 532
SfuI TTCGAA 1 cut(s) 362
SmaI CCCGGG 1 cut(s) 496
SmiMI CAYNNNNRTG 1 cut(s) 1080
SmlI CTYRAG 2 cut(s) 337, 674
SmoI CTYRAG 2 cut(s) 337, 674
SnaBI TACGTA 1 cut(s) 1092
SphI GCATGC 1 cut(s) 90
SsiI CCGC 2 cut(s) 73, 529
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 4 cut(s) 192, 493, 494, 1016
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 1 cut(s) 977
TaiI ACGT 5 cut(s) 8, 647, 880, 889, 1094
TaqI TCGA 6 cut(s) 213, 362, 443, 594, 708, 789
TfiI GAWTC 2 cut(s) 364, 710
TscAI CASTG 2 cut(s) 724, 821
TseI GCWGC 1 cut(s) 114
TspDTI ATGAA 4 cut(s) 282, 637, 727, 963
TspGWI ACGGA 1 cut(s) 742
TspMI CCCGGG 1 cut(s) 494
TspRI CASTG 2 cut(s) 724, 821
Van91I CCANNNNNTGG 1 cut(s) 582
XapI RAATTY 6 cut(s) 425, 458, 600, 669, 725, 734
XceI RCATGY 1 cut(s) 90
XmaI CCCGGG 1 cut(s) 494
XmnI GAANNNNTTC 1 cut(s) 600
XspI CTAG 1 cut(s) 44
ZraI GACGTC 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.