Rmu_co8324891.1_g000001

F-box protein CPR30-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8324891.1
OG0000234
Physical Location & Seq
Reverse (-)
182 .. 871
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8324891.1_g000001.1.cds

Sequence Viewer

Length: 690 bp
atgctgcagtgttttgatgttgtcgaggagggtgatctggatgtgaagattgctttgggagtgcaggtttatactttcagtacaaactcttggaagatgaatgaagtaatgcggttagattgggattggaaaccctgtgctaaatgtgcagttttgaatggggtatcatattggctagctgaggaagttagcgctgaagcatctgtatttagaattttgtcatttgatacaggtaatgaagaatttgaacactttagggtgccagagactattgccaatgtggatggtggcttatatattgaagtgtacaaggattcaatttgcttgctagaagtggattattgttcatgcgaagatgatgatggaggacatatatatgtatggcttctgcgagaacagtctttcatcttgttgcaaactattgttcttccgagttcgggtacttgtatccccttaggatttactatggataatcaactccttgtggaagttcttgaggatgatgatgacagatatcagctggctttatttgtccctgaatccaagcagcttaatagaactccaatcttgttgcctgtgcacacccgcagtcaagtgcacacttacaatgaaagtttggttttactcgacgatgaaagagtaattaattgtttagattctagagaatattgtgagggtttgtatccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

229

Amino Acids

26.24

Weight (kDa)

4.19

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 55
AccB1I GGYRCC 1 cut(s) 259
AciI CCGC 2 cut(s) 112, 586
AcsI RAATTY 2 cut(s) 213, 242
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 3 cut(s) 82, 308, 442
AfeI AGCGCT 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 437
AgsI TTSAA 4 cut(s) 157, 248, 302, 318
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 3 cut(s) 179, 520, 550
AluI AGCT 3 cut(s) 179, 520, 550
Alw21I GWGCWC 2 cut(s) 582, 600
Alw26I GTCTC 1 cut(s) 260
Alw44I GTGCAC 2 cut(s) 578, 596
Aor51HI AGCGCT 1 cut(s) 193
ApaLI GTGCAC 2 cut(s) 578, 596
ApeKI GCWGC 2 cut(s) 4, 547
ApoI RAATTY 2 cut(s) 213, 242
AseI ATTAAT 1 cut(s) 645
AspLEI GCGC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 44
AsuNHI GCTAGC 1 cut(s) 175
AxyI CCTNAGG 1 cut(s) 454
BaeGI GKGCMC 2 cut(s) 582, 600
BanI GGYRCC 1 cut(s) 259
Bbv12I GWGCWC 2 cut(s) 582, 600
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 559
BccI CCATC 2 cut(s) 278, 356
BciVI GTATCC 1 cut(s) 458
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 4 cut(s) 176, 329, 660, 688
BfmI CTRYAG 1 cut(s) 5
BfoI RGCGCY 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 55
BfuI GTATCC 1 cut(s) 458
BisI GCNGC 2 cut(s) 5, 548
BlsI GCNGC 2 cut(s) 6, 549
BmiI GGNNCC 1 cut(s) 261
BmsI GCATC 1 cut(s) 209
BmtI GCTAGC 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 515
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 1 cut(s) 437
Bse21I CCTNAGG 1 cut(s) 454
BseGI GGATG 3 cut(s) 46, 289, 505
BseLI CCNNNNNNNGG 1 cut(s) 437
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 2 cut(s) 582, 600
BseXI GCAGC 1 cut(s) 559
BsgI GTGCAG 2 cut(s) 83, 168
BshNI GGYRCC 1 cut(s) 259
BsiHKAI GWGCWC 2 cut(s) 582, 600
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 1 cut(s) 437
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 518
Bsp1286I GDGCHC 2 cut(s) 582, 600
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 2 cut(s) 112, 586
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 9
BspMI ACCTGC 1 cut(s) 55
BspOI GCTAGC 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 259
BsrGI TGTACA 1 cut(s) 306
BssMI GATC 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 399
BstAUI TGTACA 1 cut(s) 306
BstC8I GCNNGC 3 cut(s) 177, 326, 522
BstDEI CTNAG 2 cut(s) 180, 454
BstF5I GGATG 3 cut(s) 46, 289, 505
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstSFI CTRYAG 1 cut(s) 5
BstSLI GKGCMC 2 cut(s) 582, 600
BstV1I GCAGC 1 cut(s) 559
Bsu36I CCTNAGG 1 cut(s) 454
BsuI GTATCC 1 cut(s) 458
BtsCI GGATG 3 cut(s) 46, 289, 505
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 14
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 3 cut(s) 177, 326, 522
CfoI GCGC 1 cut(s) 194
Csp6I GTAC 3 cut(s) 81, 307, 441
CviAII CATG 1 cut(s) 348
CviJI RGCY 7 cut(s) 175, 179, 291, 385, 520, 524, 550
CviKI_1 RGCY 7 cut(s) 175, 179, 291, 385, 520, 524, 550
CviQI GTAC 3 cut(s) 81, 307, 441
DdeI CTNAG 2 cut(s) 180, 454
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Eco32I GATATC 1 cut(s) 515
Eco47III AGCGCT 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 216
Eco81I CCTNAGG 1 cut(s) 454
EcoRV GATATC 1 cut(s) 515
FaeI CATG 1 cut(s) 351
FaqI GGGAC 1 cut(s) 518
FatI CATG 1 cut(s) 347
FauI CCCGC 1 cut(s) 593
Fnu4HI GCNGC 2 cut(s) 5, 548
FokI GGATG 3 cut(s) 53, 296, 512
Fsp4HI GCNGC 2 cut(s) 5, 548
FspBI CTAG 4 cut(s) 176, 329, 660, 688
GlaI GCGC 1 cut(s) 193
GluI GCNGC 2 cut(s) 5, 548
HaeII RGCGCY 1 cut(s) 195
HhaI GCGC 1 cut(s) 194
Hin1II CATG 1 cut(s) 351
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 3 cut(s) 314, 539, 656
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 3 cut(s) 307, 580, 598
Hpy188I TCNGA 1 cut(s) 432
Hpy188III TCNNGA 3 cut(s) 38, 494, 660
Hpy8I GTNNAC 3 cut(s) 307, 580, 598
Hpy99I CGWCG 1 cut(s) 632
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4V TGCA 6 cut(s) 7, 64, 149, 415, 580, 598
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 2 cut(s) 180, 454
Hsp92II CATG 1 cut(s) 351
HspAI GCGC 1 cut(s) 192
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 8 cut(s) 23, 50, 148, 216, 276, 506, 549, 588
Lsp1109I GCAGC 1 cut(s) 559
LweI GCATC 1 cut(s) 209
MaeI CTAG 4 cut(s) 176, 329, 660, 688
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 5 cut(s) 58, 106, 251, 365, 419
MhlI GDGCHC 2 cut(s) 582, 600
MluCI AATT 5 cut(s) 213, 242, 318, 642, 646
MnlI CCTC 6 cut(s) 19, 22, 175, 359, 490, 667
MseI TTAA 2 cut(s) 552, 645
MslI CAYNNNNRTG 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 520
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 1 cut(s) 34
NheI GCTAGC 1 cut(s) 175
NlaIII CATG 1 cut(s) 351
NlaIV GGNNCC 1 cut(s) 261
PfeI GAWTC 3 cut(s) 314, 539, 656
PkrI GCNGC 2 cut(s) 6, 549
PshBI ATTAAT 1 cut(s) 645
PspN4I GGNNCC 1 cut(s) 261
PstI CTGCAG 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 520
RsaI GTAC 3 cut(s) 82, 308, 442
RsaNI GTAC 3 cut(s) 81, 307, 441
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 2 cut(s) 552, 645
SatI GCNGC 2 cut(s) 5, 548
Sau3AI GATC 1 cut(s) 34
SduI GDGCHC 2 cut(s) 582, 600
SetI ASST 5 cut(s) 69, 181, 235, 522, 552
SfaNI GCATC 1 cut(s) 209
SfcI CTRYAG 1 cut(s) 5
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 5 cut(s) 213, 242, 318, 642, 646
SsiI CCGC 2 cut(s) 112, 586
SspI AATATT 1 cut(s) 668
SspMI CTAG 4 cut(s) 176, 329, 660, 688
TaaI ACNGT 1 cut(s) 399
TaqI TCGA 2 cut(s) 24, 627
TasI AATT 5 cut(s) 213, 242, 318, 642, 646
TatI WGTACW 2 cut(s) 80, 306
TfiI GAWTC 3 cut(s) 314, 539, 656
Tru1I TTAA 2 cut(s) 552, 645
Tru9I TTAA 2 cut(s) 552, 645
TscAI CASTG 1 cut(s) 14
TseI GCWGC 2 cut(s) 4, 547
TspDTI ATGAA 7 cut(s) 113, 117, 252, 336, 394, 624, 648
TspRI CASTG 1 cut(s) 14
VneI GTGCAC 2 cut(s) 578, 596
VspI ATTAAT 1 cut(s) 645
XapI RAATTY 2 cut(s) 213, 242
XbaI TCTAGA 1 cut(s) 659
XspI CTAG 4 cut(s) 176, 329, 660, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.