RchiOBHm_Chr1g0344471

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000234
Physical Location & Seq
Forward (+)
36838418 .. 36839575
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57092

Sequence Viewer

Length: 1158 bp
ATGTCAACTATGGAGCAAGGCACACGAAGGGATGCAGAATTGTTCAAATTCATACCCGAGGAAATTATGTTTGAAATCCTCACAAGATTATCAGTGAAATCTTTACTGAGATTCAGATGTGTTTGCAAATCTTGGAACTCATTAATTACCAGTCCAAATTTCATAAACAACCATCTTGAAAGACATGATATGGATAGTTCTTGTGACTATTTACTTGTCCAGACTGGTAGTGCAAAGTCACTCTTTTGTGCAAAAACATTTGTCAAGTATATGGACTTAGATCTTCCAAGTTGCGAGATGTATCTCGGTTTCAATGACTTCTTTGTTTATGGTTCGTGCAATGGATTGCTGTGCATCTGTGCTAACCATGCATATGGGCCTTTGAACAGTTCCATGTATATGTGGAATCCATCGAACAGAAAAATCAAGAGACTTCCACAAGGTCTTTACCAAAATGTGGGTATTAATGTCAGTCTCGGGTTTGGATTTCACCGTCAGAAAAACGACTATAAAGTTGTGAAGATTGTACATGGGGAAATTATGTACAAAGTTGAGGTCTACTCCCTTAGATTGAATTCATGGAGAGAACTTGGTGCAGTTCTCCCCATTTGGTCCTACTCTACATACCTAAACAAATCTGCAATACATGTCAATGGAGTTGTGTACTGGATGGTAAAGGAGAAAAACTCTGCAAGATCTTTCATACTTTCTTTTGATATGGACAATGAGGTTTTCCAAAAGATGGAACTCCCTGAGAAACTAGTCGGAGGGATTGGTTCTGTTAGTATCCAAGTGTTTGAGAAATCCCTTTCTTTGATACACTTGAGAGAAGATGAGGATAATCTTGTAAGGCATGTTTCTTACTGTGACATCTGGGTTATGGGACTGGAAACATGGAAAATGATTCGCACGATTCTTCTACCGCAAGTGAGACTTTATCCAGCATATGGACGTATGGCATGGCCATTGAGCTTTACAACAGATGGAGTTTATATTGTAAGGCTGGATGAAAAAGAATTCCAAACTTTGGTTTTATTTGATCCTATATCGCAAGAAGCTGAGGCAATAACTAGAGTTAAACCGGGTTTTTATGGCTACATTACCTACATATACATGGAGGTCCACGCTTATAAAGAAACTCTAATTTTACTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

385

Amino Acids

44.75

Weight (kDa)

7.09

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 55 3.2e-12 F-box domain
F-box-like PF12937 18 - 52 1.4e-09 F-box-like
FBA_3 PF08268 107 - 294 3.8e-17 F-box associated beta propeller domain
FBA_1 PF07734 112 - 294 4.8e-22 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1131
AccB7I CCANNNNNTGG 4 cut(s) 457, 742, 947, 1027
AccI GTMKAC 1 cut(s) 558
AciI CCGC 1 cut(s) 923
AclWI GGATC 1 cut(s) 1034
AcoI YGGCCR 1 cut(s) 962
AcsI RAATTY 4 cut(s) 47, 157, 574, 1016
AfaI GTAC 3 cut(s) 528, 545, 665
AfiI CCNNNNNNNGG 4 cut(s) 457, 742, 947, 1027
AflIII ACRYGT 1 cut(s) 646
AgsI TTSAA 6 cut(s) 46, 74, 179, 313, 385, 574
AhlI ACTAGT 1 cut(s) 760
AluBI AGCT 2 cut(s) 972, 1058
AluI AGCT 2 cut(s) 972, 1058
Alw26I GTCTC 3 cut(s) 424, 479, 925
AlwI GGATC 1 cut(s) 1034
Ama87I CYCGRG 2 cut(s) 56, 476
AoxI GGCC 2 cut(s) 377, 962
ApoI RAATTY 4 cut(s) 47, 157, 574, 1016
ArsI GACNNNNNNTTYG 2 cut(s) 540, 572
AseI ATTAAT 2 cut(s) 143, 465
AspS9I GGNCC 3 cut(s) 377, 612, 1120
AsuC2I CCSGG 1 cut(s) 1083
AsuHPI GGTGA 1 cut(s) 482
AvaI CYCGRG 2 cut(s) 56, 476
AvaII GGWCC 2 cut(s) 612, 1120
BalI TGGCCA 1 cut(s) 964
BbvCI CCTCAGC 1 cut(s) 1059
BccI CCATC 5 cut(s) 180, 418, 664, 736, 977
BciVI GTATCC 1 cut(s) 797
BcnI CCSGG 1 cut(s) 1083
BcoDI GTCTC 3 cut(s) 424, 479, 925
BcuI ACTAGT 1 cut(s) 760
BfaI CTAG 2 cut(s) 761, 1071
BfuI GTATCC 1 cut(s) 797
BglII AGATCT 2 cut(s) 280, 695
Bme1390I CCNGG 1 cut(s) 1083
Bme18I GGWCC 2 cut(s) 612, 1120
BmeT110I CYCGRG 2 cut(s) 56, 476
BmgT120I GGNCC 3 cut(s) 377, 612, 1120
BmrFI CCNGG 1 cut(s) 1083
BmsI GCATC 2 cut(s) 22, 363
BplI GAGNNNNNCTC 4 cut(s) 545, 577, 671, 703
Bpu10I CCTNAGC 1 cut(s) 1059
BpuEI CTTGAG 1 cut(s) 844
BpuMI CCSGG 1 cut(s) 1083
BsaJI CCNNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 4 cut(s) 457, 742, 947, 1027
Bse1I ACTGG 4 cut(s) 150, 229, 671, 891
Bse3DI GCAATG 1 cut(s) 346
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 3 cut(s) 37, 675, 1012
BseLI CCNNNNNNNGG 4 cut(s) 457, 742, 947, 1027
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 3 cut(s) 98, 744, 1050
BseNI ACTGG 4 cut(s) 150, 229, 671, 891
BsgI GTGCAG 1 cut(s) 615
BshFI GGCC 2 cut(s) 379, 964
BsiHKCI CYCGRG 2 cut(s) 56, 476
BsiSI CCGG 1 cut(s) 1082
BslFI GGGAC 1 cut(s) 897
BslI CCNNNNNNNGG 4 cut(s) 457, 742, 947, 1027
BsmAI GTCTC 3 cut(s) 424, 479, 925
BsmFI GGGAC 1 cut(s) 897
BsnI GGCC 2 cut(s) 379, 964
BsoBI CYCGRG 2 cut(s) 56, 476
Bsp1407I TGTACA 2 cut(s) 526, 543
Bsp143I GATC 3 cut(s) 280, 695, 1039
BspACI CCGC 1 cut(s) 923
BspANI GGCC 2 cut(s) 379, 964
BspCNI CTCAG 3 cut(s) 99, 745, 1051
BspPI GGATC 1 cut(s) 1034
BsrDI GCAATG 1 cut(s) 346
BsrGI TGTACA 2 cut(s) 526, 543
BsrI ACTGG 4 cut(s) 150, 229, 671, 891
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 3 cut(s) 280, 695, 1039
Bst4CI ACNGT 3 cut(s) 389, 494, 866
BstAUI TGTACA 2 cut(s) 526, 543
BstDEI CTNAG 5 cut(s) 107, 277, 566, 753, 1059
BstF5I GGATG 3 cut(s) 37, 675, 1012
BstKTI GATC 3 cut(s) 283, 698, 1042
BstMAI GTCTC 3 cut(s) 424, 479, 925
BstMBI GATC 3 cut(s) 280, 695, 1039
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNSI RCATGY 2 cut(s) 650, 857
BstSCI CCNGG 1 cut(s) 1081
BstX2I RGATCY 2 cut(s) 280, 695
BstXI CCANNNNNNTGG 1 cut(s) 374
BstYI RGATCY 2 cut(s) 280, 695
BsuI GTATCC 1 cut(s) 797
BsuRI GGCC 2 cut(s) 379, 964
BtsCI GGATG 3 cut(s) 37, 675, 1012
BtsIMutI CAGTG 1 cut(s) 99
Cfr13I GGNCC 3 cut(s) 377, 612, 1120
Csp6I GTAC 3 cut(s) 527, 544, 664
CviJI RGCY 6 cut(s) 379, 964, 972, 1003, 1058, 1095
CviKI_1 RGCY 6 cut(s) 379, 964, 972, 1003, 1058, 1095
CviQI GTAC 3 cut(s) 527, 544, 664
DdeI CTNAG 5 cut(s) 107, 277, 566, 753, 1059
DpnI GATC 3 cut(s) 282, 697, 1041
DpnII GATC 3 cut(s) 280, 695, 1039
EaeI YGGCCR 1 cut(s) 962
Eco47I GGWCC 2 cut(s) 612, 1120
Eco88I CYCGRG 2 cut(s) 56, 476
EcoRI GAATTC 2 cut(s) 574, 1016
EcoT22I ATGCAT 1 cut(s) 373
FalI AAGNNNNNCTT 4 cut(s) 227, 259, 918, 950
FaqI GGGAC 1 cut(s) 897
FauNDI CATATG 2 cut(s) 373, 946
FblI GTMKAC 1 cut(s) 558
FokI GGATG 3 cut(s) 44, 682, 1019
FspBI CTAG 2 cut(s) 761, 1071
HaeIII GGCC 2 cut(s) 379, 964
HapII CCGG 1 cut(s) 1082
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 4 cut(s) 111, 406, 904, 913
HpaII CCGG 1 cut(s) 1082
HphI GGTGA 1 cut(s) 482
Hpy166II GTNNAC 4 cut(s) 6, 559, 664, 1123
Hpy188I TCNGA 3 cut(s) 116, 498, 767
Hpy188III TCNNGA 3 cut(s) 176, 220, 427
Hpy8I GTNNAC 4 cut(s) 6, 559, 664, 1123
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 3 cut(s) 389, 494, 866
HpyCH4IV ACGT 1 cut(s) 952
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 5 cut(s) 107, 277, 566, 753, 1059
HpySE526I ACGT 1 cut(s) 952
Kzo9I GATC 3 cut(s) 280, 695, 1039
LmnI GCTCC 1 cut(s) 13
LweI GCATC 2 cut(s) 22, 363
MaeI CTAG 2 cut(s) 761, 1071
MaeII ACGT 1 cut(s) 952
MaeIII GTNAC 3 cut(s) 203, 237, 866
MalI GATC 3 cut(s) 282, 697, 1041
MboI GATC 3 cut(s) 280, 695, 1039
MboII GAAGA 4 cut(s) 275, 532, 842, 908
MflI RGATCY 2 cut(s) 280, 695
MlsI TGGCCA 1 cut(s) 964
MluCI AATT 9 cut(s) 38, 47, 63, 144, 157, 537, 574, 1016, 1143
MluNI TGGCCA 1 cut(s) 964
MmeI TCCRAC 1 cut(s) 745
MnlI CCTC 8 cut(s) 52, 89, 547, 721, 761, 829, 1054, 1111
Mox20I TGGCCA 1 cut(s) 964
Mph1103I ATGCAT 1 cut(s) 373
MscI TGGCCA 1 cut(s) 964
MseI TTAA 3 cut(s) 143, 465, 1077
MslI CAYNNNNRTG 4 cut(s) 372, 398, 651, 1112
Msp20I TGGCCA 1 cut(s) 964
MspI CCGG 1 cut(s) 1082
MspR9I CCNGG 1 cut(s) 1083
MwoI GCNNNNNNNGC 1 cut(s) 368
NciI CCSGG 1 cut(s) 1083
NdeI CATATG 2 cut(s) 373, 946
NdeII GATC 3 cut(s) 280, 695, 1039
NmuCI GTSAC 3 cut(s) 203, 237, 866
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 2 cut(s) 650, 857
PciI ACATGT 1 cut(s) 646
PfeI GAWTC 4 cut(s) 111, 406, 904, 913
PflMI CCANNNNNTGG 4 cut(s) 457, 742, 947, 1027
PscI ACATGT 1 cut(s) 646
PshBI ATTAAT 2 cut(s) 143, 465
PsiI TTATAA 1 cut(s) 1131
PspPI GGNCC 3 cut(s) 377, 612, 1120
PsuI RGATCY 2 cut(s) 280, 695
RsaI GTAC 3 cut(s) 528, 545, 665
RsaNI GTAC 3 cut(s) 527, 544, 664
RseI CAYNNNNRTG 4 cut(s) 372, 398, 651, 1112
SaqAI TTAA 3 cut(s) 143, 465, 1077
Sau3AI GATC 3 cut(s) 280, 695, 1039
Sau96I GGNCC 3 cut(s) 377, 612, 1120
ScrFI CCNGG 1 cut(s) 1083
SetI ASST 9 cut(s) 445, 558, 630, 732, 955, 974, 1060, 1106, 1122
SfaNI GCATC 2 cut(s) 22, 363
SinI GGWCC 2 cut(s) 612, 1120
SmiMI CAYNNNNRTG 4 cut(s) 372, 398, 651, 1112
SmlI CTYRAG 1 cut(s) 823
SmoI CTYRAG 1 cut(s) 823
SpeI ACTAGT 1 cut(s) 760
Sse9I AATT 9 cut(s) 38, 47, 63, 144, 157, 537, 574, 1016, 1143
SsiI CCGC 1 cut(s) 923
SspMI CTAG 2 cut(s) 761, 1071
StyD4I CCNGG 1 cut(s) 1081
TaaI ACNGT 3 cut(s) 389, 494, 866
TaiI ACGT 1 cut(s) 955
TaqI TCGA 2 cut(s) 413, 1152
TasI AATT 9 cut(s) 38, 47, 63, 144, 157, 537, 574, 1016, 1143
TatI WGTACW 3 cut(s) 526, 543, 663
TfiI GAWTC 4 cut(s) 111, 406, 904, 913
Tru1I TTAA 3 cut(s) 143, 465, 1077
Tru9I TTAA 3 cut(s) 143, 465, 1077
TscAI CASTG 1 cut(s) 99
TseFI GTSAC 3 cut(s) 203, 237, 866
Tsp45I GTSAC 3 cut(s) 203, 237, 866
TspDTI ATGAA 5 cut(s) 40, 151, 567, 691, 1023
TspRI CASTG 1 cut(s) 99
Van91I CCANNNNNTGG 4 cut(s) 457, 742, 947, 1027
VpaK11BI GGWCC 2 cut(s) 612, 1120
VspI ATTAAT 2 cut(s) 143, 465
XapI RAATTY 4 cut(s) 47, 157, 574, 1016
XceI RCATGY 2 cut(s) 650, 857
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 2 cut(s) 761, 1071
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.