RchiOBHm_Chr2g0143631

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000234
Physical Location & Seq
Reverse (-)
61291683 .. 61293438
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51372

Sequence Viewer

Length: 1170 bp
ATGAGAAGAAACAAATGCAAGAAGAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTACTATTAGTAGTGTTAGTTATATCCCTGAAGAAATCTTGATCAACATCCTAGCAAGATTACCTGCAAAGTCGCTCCTTCGGTTTAGGTGTGTATCCCAGTCATGGCGTGGTTTGATTGGCAGCCCAAGTTTTGTTAGTAAACATCTTAACAGGAATGTTACAAAACTTTCGCATACCTATCTAATTGCCCTCCAGCGCTTGAGAGATAAGCCAGCACTTTGCCACTCGCTATTTTCTACTGAAACATTTGAGGAGTGTTTGAAGTTGAGACATCCCTTGTGGACTGAGGAACAGTTTAGGATATATGGTTCAAGTAATGGGCTGGTTTGTATTTCGGATCAAGTACTGCGGCCGAGTAGTCCTATATGCATATGGAATCCATGTATTAGGAAATTTAGGACTCTTCCACAATCAATATTCAAACCACATTATTCCAGTTATGATATCTCTCTCTCATTTGGATTCCACCCGGAGCTTAATGACTACAGAGTGGTAACAATGGGTTGGTATGTTCGATCTATCATAAAGGTGCAGGTCTATAGTCTTAGTACTGGCTCTTGGAAGATGATTGAAGTAATTCCTCCTTGGTTAAAGTTCAATCCAGACTGGTGTCGAGGATGCGCATTTTTCAATGGAGTGGCATACTGGCTTTTTACAAAGTCAAAAAAGTTTAGGTTTGTGTCATTTGATACGGATAGTGAAGAATTTGAAGAATTAATGGTTCCAGATACTATTTCCACCAAGGGCTTCACATATGTTGGAGTCTACAATGGCTTGGTTTGCCTTTTTTATTCCTATCTTGAAGGTCCTGATTGCCAGAAACCACAAAAATATATGGACATATGGGTTCTGAAAGAACAGTCTTTTACCAAGTTGCACACTGCAGTTTTACTGCCCGGAAGAGACTATTTGCCATTGGGGTTTAGTATCCAGAACGAACTCATTGCGAAGGACAAAAAGCATACTAAAGGTGATGAAGGAGATACGGGCCAGATGGTTCTATATGATCTCAAAATGAAGCTGATAAAGAAAACAGGGATTAGCTTGGCGCAGGATAGTCATTACAAAACTTCAGCAGGTACTTACATTGAAAGTTTGGTTCTACTCGATCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

389

Amino Acids

44.73

Weight (kDa)

9.23

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 25 - 61 2.4e-08 F-box-like
F-box PF00646 26 - 63 8.1e-11 F-box domain
FBA_3 PF08268 112 - 306 2.4e-20 F-box associated beta propeller domain
FBA_1 PF07734 122 - 385 4.5e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 676
Acc36I ACCTGC 3 cut(s) 124, 577, 1121
AccI GTMKAC 1 cut(s) 819
AciI CCGC 1 cut(s) 403
AclWI GGATC 1 cut(s) 399
AcoI YGGCCR 1 cut(s) 404
AcsI RAATTY 2 cut(s) 446, 758
AcuI CTGAAG 2 cut(s) 102, 1110
AfaI GTAC 4 cut(s) 55, 399, 604, 1135
AfeI AGCGCT 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 156
AgsI TTSAA 9 cut(s) 316, 366, 475, 626, 652, 685, 764, 857, 1145
AloI GAACNNNNNNTCC 2 cut(s) 346, 378
AluBI AGCT 3 cut(s) 529, 1075, 1098
AluI AGCT 3 cut(s) 529, 1075, 1098
Alw26I GTCTC 2 cut(s) 316, 951
AlwI GGATC 1 cut(s) 399
Aor51HI AGCGCT 1 cut(s) 251
AoxI GGCC 2 cut(s) 404, 1042
ApeKI GCWGC 1 cut(s) 174
ApoI RAATTY 2 cut(s) 446, 758
AseI ATTAAT 1 cut(s) 770
Asp700I GAANNNNTTC 1 cut(s) 630
AspLEI GCGC 3 cut(s) 252, 677, 1105
AspS9I GGNCC 2 cut(s) 860, 1042
AsuC2I CCSGG 2 cut(s) 524, 951
AsuHPI GGTGA 1 cut(s) 1037
AvaII GGWCC 1 cut(s) 860
BbvI GCAGC 1 cut(s) 186
BccI CCATC 1 cut(s) 1042
BcgI CGANNNNNNTGC 2 cut(s) 980, 1014
BciVI GTATCC 2 cut(s) 157, 992
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 2 cut(s) 524, 951
BcoDI GTCTC 2 cut(s) 316, 951
BfaI CTAG 1 cut(s) 104
BfmI CTRYAG 3 cut(s) 538, 592, 936
BfoI RGCGCY 1 cut(s) 253
BfuAI ACCTGC 3 cut(s) 124, 577, 1121
BfuI GTATCC 2 cut(s) 157, 992
BisI GCNGC 2 cut(s) 175, 404
BlsI GCNGC 2 cut(s) 176, 405
BmcAI AGTACT 3 cut(s) 55, 399, 604
Bme1390I CCNGG 2 cut(s) 524, 951
Bme18I GGWCC 1 cut(s) 860
BmgT120I GGNCC 2 cut(s) 860, 1042
BmiI GGNNCC 1 cut(s) 777
BmrFI CCNGG 2 cut(s) 524, 951
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 1 cut(s) 662
BmuI ACTGGG 1 cut(s) 145
BoxI GACNNNNGTC 1 cut(s) 663
BpmI CTGGAG 1 cut(s) 230
BpuEI CTTGAG 1 cut(s) 274
BpuMI CCSGG 2 cut(s) 524, 951
BsaBI GATNNNNATC 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 638, 795
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse1I ACTGG 5 cut(s) 151, 489, 610, 665, 704
Bse3DI GCAATG 1 cut(s) 996
Bse8I GATNNNNATC 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 638, 795
BseGI GGATG 3 cut(s) 99, 325, 677
BseJI GATNNNNATC 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 5 cut(s) 151, 489, 610, 665, 704
BseRI GAGGAG 1 cut(s) 320
BseX3I CGGCCG 1 cut(s) 404
BseXI GCAGC 1 cut(s) 186
BsgI GTGCAG 1 cut(s) 605
Bsh1285I CGRYCG 2 cut(s) 407, 1165
BshFI GGCC 2 cut(s) 406, 1044
BsiEI CGRYCG 2 cut(s) 407, 1165
BsiSI CCGG 2 cut(s) 524, 951
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 2 cut(s) 316, 951
BsnI GGCC 2 cut(s) 406, 1044
Bsp143I GATC 5 cut(s) 93, 391, 569, 1060, 1162
BspACI CCGC 1 cut(s) 403
BspANI GGCC 2 cut(s) 406, 1044
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 777
BspMAI CTGCAG 1 cut(s) 940
BspMI ACCTGC 3 cut(s) 124, 577, 1121
BspPI GGATC 1 cut(s) 399
BsrDI GCAATG 1 cut(s) 996
BsrI ACTGG 5 cut(s) 151, 489, 610, 665, 704
BssECI CCNNGG 2 cut(s) 638, 795
BssMI GATC 5 cut(s) 93, 391, 569, 1060, 1162
BssT1I CCWWGG 2 cut(s) 638, 795
Bst4CI ACNGT 2 cut(s) 348, 915
Bst6I CTCTTC 3 cut(s) 17, 462, 949
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 339, 599
BstF5I GGATG 3 cut(s) 99, 325, 677
BstH2I RGCGCY 1 cut(s) 253
BstHHI GCGC 3 cut(s) 252, 677, 1105
BstKTI GATC 5 cut(s) 96, 394, 572, 1063, 1165
BstMAI GTCTC 2 cut(s) 316, 951
BstMBI GATC 5 cut(s) 93, 391, 569, 1060, 1162
BstMCI CGRYCG 2 cut(s) 407, 1165
BstMWI GCNNNNNNNGC 1 cut(s) 834
BstPAI GACNNNNGTC 1 cut(s) 663
BstSCI CCNGG 2 cut(s) 522, 949
BstSFI CTRYAG 3 cut(s) 538, 592, 936
BstV1I GCAGC 1 cut(s) 186
BstZI CGGCCG 1 cut(s) 404
BsuI GTATCC 2 cut(s) 157, 992
BsuRI GGCC 2 cut(s) 406, 1044
BtsCI GGATG 3 cut(s) 99, 325, 677
BtsI GCAGTG 1 cut(s) 933
BtsIMutI CAGTG 1 cut(s) 933
BveI ACCTGC 3 cut(s) 124, 577, 1121
Cac8I GCNNGC 1 cut(s) 267
CfoI GCGC 3 cut(s) 252, 677, 1105
Cfr13I GGNCC 2 cut(s) 860, 1042
Csp6I GTAC 4 cut(s) 54, 398, 603, 1134
CviAII CATG 2 cut(s) 156, 435
CviQI GTAC 4 cut(s) 54, 398, 603, 1134
DdeI CTNAG 2 cut(s) 339, 599
DpnI GATC 5 cut(s) 95, 393, 571, 1062, 1164
DpnII GATC 5 cut(s) 93, 391, 569, 1060, 1162
EaeI YGGCCR 1 cut(s) 404
EagI CGGCCG 1 cut(s) 404
Eam1104I CTCTTC 3 cut(s) 17, 462, 949
EarI CTCTTC 3 cut(s) 17, 462, 949
EclXI CGGCCG 1 cut(s) 404
Eco130I CCWWGG 2 cut(s) 638, 795
Eco32I GATATC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 860
Eco47III AGCGCT 1 cut(s) 251
Eco52I CGGCCG 1 cut(s) 404
Eco57I CTGAAG 2 cut(s) 102, 1110
EcoO109I RGGNCCY 1 cut(s) 860
EcoRV GATATC 1 cut(s) 499
EcoT14I CCWWGG 2 cut(s) 638, 795
EcoT22I ATGCAT 1 cut(s) 425
ErhI CCWWGG 2 cut(s) 638, 795
FaeI CATG 2 cut(s) 159, 438
FatI CATG 2 cut(s) 155, 434
FauNDI CATATG 3 cut(s) 425, 808, 896
FbaI TGATCA 1 cut(s) 93
FblI GTMKAC 1 cut(s) 819
Fnu4HI GCNGC 2 cut(s) 175, 404
FokI GGATG 3 cut(s) 86, 312, 684
Fsp4HI GCNGC 2 cut(s) 175, 404
FspAI RTGCGCAY 1 cut(s) 676
FspBI CTAG 1 cut(s) 104
FspI TGCGCA 1 cut(s) 676
GlaI GCGC 3 cut(s) 251, 676, 1104
GluI GCNGC 2 cut(s) 175, 404
GsuI CTGGAG 1 cut(s) 230
HaeII RGCGCY 1 cut(s) 253
HaeIII GGCC 2 cut(s) 406, 1044
HapII CCGG 2 cut(s) 524, 951
HhaI GCGC 3 cut(s) 252, 677, 1105
Hin1II CATG 2 cut(s) 159, 438
Hin6I GCGC 3 cut(s) 250, 675, 1103
HinP1I GCGC 3 cut(s) 250, 675, 1103
HinfI GANTC 4 cut(s) 430, 454, 516, 816
HpaII CCGG 2 cut(s) 524, 951
HphI GGTGA 1 cut(s) 1037
Hpy166II GTNNAC 3 cut(s) 194, 336, 820
Hpy188I TCNGA 2 cut(s) 391, 906
Hpy188III TCNNGA 6 cut(s) 91, 656, 779, 854, 863, 985
Hpy8I GTNNAC 3 cut(s) 194, 336, 820
HpyAV CCTTC 4 cut(s) 140, 851, 997, 1025
HpyCH4III ACNGT 2 cut(s) 348, 915
HpyCH4V TGCA 6 cut(s) 18, 119, 423, 586, 931, 938
HpyF10VI GCNNNNNNNGC 1 cut(s) 834
HpyF3I CTNAG 2 cut(s) 339, 599
Hsp92II CATG 2 cut(s) 159, 438
HspAI GCGC 3 cut(s) 250, 675, 1103
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 5 cut(s) 93, 391, 569, 1060, 1162
LmnI GCTCC 2 cut(s) 132, 526
Lsp1109I GCAGC 1 cut(s) 186
LweI GCATC 1 cut(s) 662
MaeI CTAG 1 cut(s) 104
MaeIII GTNAC 2 cut(s) 211, 547
MalI GATC 5 cut(s) 95, 393, 571, 1062, 1164
MboI GATC 5 cut(s) 93, 391, 569, 1060, 1162
MboII GAAGA 8 cut(s) 18, 34, 95, 449, 628, 767, 776, 966
MluCI AATT 5 cut(s) 237, 446, 630, 758, 767
MlyI GAGTC 2 cut(s) 448, 825
MmeI TCCRAC 1 cut(s) 793
MnlI CCTC 5 cut(s) 254, 298, 334, 645, 662
Mph1103I ATGCAT 1 cut(s) 425
MroXI GAANNNNTTC 1 cut(s) 630
MseI TTAA 4 cut(s) 201, 531, 644, 770
MslI CAYNNNNRTG 1 cut(s) 581
MspI CCGG 2 cut(s) 524, 951
MspR9I CCNGG 2 cut(s) 524, 951
MwoI GCNNNNNNNGC 1 cut(s) 834
NciI CCSGG 2 cut(s) 524, 951
NdeI CATATG 3 cut(s) 425, 808, 896
NdeII GATC 5 cut(s) 93, 391, 569, 1060, 1162
NlaIII CATG 2 cut(s) 159, 438
NlaIV GGNNCC 1 cut(s) 777
NmeAIII GCCGAG 1 cut(s) 432
NsbI TGCGCA 1 cut(s) 676
NsiI ATGCAT 1 cut(s) 425
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 2 cut(s) 430, 516
PkrI GCNGC 2 cut(s) 176, 405
Ple19I CGATCG 1 cut(s) 1165
PleI GAGTC 2 cut(s) 448, 824
PpsI GAGTC 2 cut(s) 448, 824
PpuMI RGGWCCY 1 cut(s) 860
PshAI GACNNNNGTC 1 cut(s) 663
PshBI ATTAAT 1 cut(s) 770
Psp5II RGGWCCY 1 cut(s) 860
PspN4I GGNNCC 1 cut(s) 777
PspPI GGNCC 2 cut(s) 860, 1042
PspPPI RGGWCCY 1 cut(s) 860
PstI CTGCAG 1 cut(s) 940
PvuI CGATCG 1 cut(s) 1165
RsaI GTAC 4 cut(s) 55, 399, 604, 1135
RsaNI GTAC 4 cut(s) 54, 398, 603, 1134
RseI CAYNNNNRTG 1 cut(s) 581
SaqAI TTAA 4 cut(s) 201, 531, 644, 770
SatI GCNGC 2 cut(s) 175, 404
Sau3AI GATC 5 cut(s) 93, 391, 569, 1060, 1162
Sau96I GGNCC 2 cut(s) 860, 1042
ScaI AGTACT 3 cut(s) 55, 399, 604
SchI GAGTC 2 cut(s) 448, 825
ScrFI CCNGG 2 cut(s) 524, 951
SfaNI GCATC 1 cut(s) 662
SfcI CTRYAG 3 cut(s) 538, 592, 936
SinI GGWCC 1 cut(s) 860
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 5 cut(s) 237, 446, 630, 758, 767
SsiI CCGC 1 cut(s) 403
SspI AATATT 1 cut(s) 471
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 2 cut(s) 522, 949
StyI CCWWGG 2 cut(s) 638, 795
TaaI ACNGT 2 cut(s) 348, 915
TaqI TCGA 3 cut(s) 568, 667, 1161
TasI AATT 5 cut(s) 237, 446, 630, 758, 767
TatI WGTACW 3 cut(s) 53, 397, 602
TauI GCSGC 1 cut(s) 406
TfiI GAWTC 2 cut(s) 430, 516
Tru1I TTAA 4 cut(s) 201, 531, 644, 770
Tru9I TTAA 4 cut(s) 201, 531, 644, 770
TscAI CASTG 1 cut(s) 940
TseI GCWGC 1 cut(s) 174
TspDTI ATGAA 2 cut(s) 1044, 1085
TspGWI ACGGA 1 cut(s) 761
TspRI CASTG 1 cut(s) 940
VpaK11BI GGWCC 1 cut(s) 860
VspI ATTAAT 1 cut(s) 770
XapI RAATTY 2 cut(s) 446, 758
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 819
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 1 cut(s) 104
ZrmI AGTACT 3 cut(s) 55, 399, 604
Zsp2I ATGCAT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.