RLG00000007681

F-box protein CPR30-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000234
Physical Location & Seq
Forward (+)
19818822 .. 19820076
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007681

Sequence Viewer

Length: 474 bp
ATGGAAGTTGAGGTTTATAGTCTTAGCACCAACTCCTGGAAAGTGATTGAATTTACTCCTCGGCTAAATTCCCTGTGGTATCTCGCAGGTTATGAGGTTTGCAATGGATTAGTATATTGGCTGATATATGAAGATTATTATAGGATCGTGACCTTTGATACGGGAAGCGAAAAATTTGATGAATTGGTGGTTCCAGATCCCATGGTGCCTGTTAAGGGTGCTGTCGAGATTCAACTTGCTGGGGTAAAAGATTTGTTGGTCATGAATACTCATGATAGATGGCTCTTCCCATTCTTGACTATGGAAACTACTACAGTTGTGGCAAAATTGACTATGGATATGCTTGACAGTGCCTATTCTAAAATGATTATGTATGAGGAGAGTCTACTCCAGATTGCTGATTATCATGCAGCCAAAGAGAAGGAGGAAGAGACGACTCAAAACCCAATAGATGGCATTGGTCTTGCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

158

Amino Acids

18.06

Weight (kDa)

4.33

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 89 1.9e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 77
AccB1I GGYRCC 1 cut(s) 205
AccB7I CCANNNNNTGG 2 cut(s) 36, 452
AccI GTMKAC 1 cut(s) 385
AclWI GGATC 2 cut(s) 152, 191
AcsI RAATTY 3 cut(s) 50, 67, 173
AfiI CCNNNNNNNGG 3 cut(s) 36, 215, 452
AgsI TTSAA 2 cut(s) 50, 233
AjnI CCWGG 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 2 cut(s) 152, 191
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 3 cut(s) 50, 67, 173
BanI GGYRCC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 422
BccI CCATC 2 cut(s) 273, 446
BciT130I CCWGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 425
BfmI CTRYAG 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 77
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
Bme1390I CCNGG 1 cut(s) 37
BmiI GGNNCC 2 cut(s) 192, 207
BmrFI CCNGG 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 59, 201
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 215, 452
Bse3DI GCAATG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 2 cut(s) 59, 201
BseLI CCNNNNNNNGG 3 cut(s) 36, 215, 452
BseMI GCAATG 1 cut(s) 109
BseRI GAGGAG 2 cut(s) 48, 392
BseXI GCAGC 1 cut(s) 422
BseYI CCCAGC 1 cut(s) 239
BshNI GGYRCC 1 cut(s) 205
BslI CCNNNNNNNGG 3 cut(s) 36, 215, 452
BsmAI GTCTC 1 cut(s) 425
BsmBI CGTCTC 1 cut(s) 425
Bsp143I GATC 2 cut(s) 144, 196
Bsp19I CCATGG 1 cut(s) 201
BspHI TCATGA 2 cut(s) 261, 271
BspLI GGNNCC 2 cut(s) 192, 207
BspMI ACCTGC 1 cut(s) 77
BspPI GGATC 2 cut(s) 152, 191
BspQI GCTCTTC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 109
BssECI CCNNGG 2 cut(s) 59, 201
BssMI GATC 2 cut(s) 144, 196
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 2 cut(s) 316, 350
Bst6I CTCTTC 2 cut(s) 290, 423
BstDEI CTNAG 1 cut(s) 23
BstDSI CCRYGG 1 cut(s) 201
BstKTI GATC 2 cut(s) 147, 199
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 2 cut(s) 144, 196
BstNI CCWGG 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 422
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 355
BveI ACCTGC 1 cut(s) 77
CciI TCATGA 2 cut(s) 261, 271
CviAII CATG 4 cut(s) 202, 262, 272, 407
CviJI RGCY 4 cut(s) 64, 121, 283, 413
CviKI_1 RGCY 4 cut(s) 64, 121, 283, 413
DdeI CTNAG 1 cut(s) 23
DpnI GATC 2 cut(s) 146, 198
DpnII GATC 2 cut(s) 144, 196
Eam1104I CTCTTC 2 cut(s) 290, 423
EarI CTCTTC 2 cut(s) 290, 423
Eco130I CCWWGG 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 425
FaeI CATG 4 cut(s) 205, 265, 275, 410
FatI CATG 4 cut(s) 201, 261, 271, 406
FblI GTMKAC 1 cut(s) 385
Fnu4HI GCNGC 1 cut(s) 411
Fsp4HI GCNGC 1 cut(s) 411
GluI GCNGC 1 cut(s) 411
GsaI CCCAGC 1 cut(s) 243
GsuI CTGGAG 1 cut(s) 374
Hin1II CATG 4 cut(s) 205, 265, 275, 410
HinfI GANTC 3 cut(s) 229, 382, 436
Hpy166II GTNNAC 1 cut(s) 386
Hpy188III TCNNGA 7 cut(s) 148, 194, 226, 262, 272, 295, 391
Hpy8I GTNNAC 1 cut(s) 386
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 2 cut(s) 316, 350
HpyCH4V TGCA 2 cut(s) 102, 410
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 4 cut(s) 205, 265, 275, 410
Kzo9I GATC 2 cut(s) 144, 196
LguI GCTCTTC 1 cut(s) 290
LpnPI CCDG 8 cut(s) 22, 49, 72, 86, 207, 222, 225, 404
Lsp1109I GCAGC 1 cut(s) 422
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 146, 198
MboI GATC 2 cut(s) 144, 196
MboII GAAGA 3 cut(s) 143, 277, 440
MflI RGATCY 1 cut(s) 196
MluCI AATT 6 cut(s) 50, 67, 173, 182, 326, 469
MlyI GAGTC 2 cut(s) 391, 430
MnlI CCTC 5 cut(s) 4, 69, 88, 370, 418
MseI TTAA 2 cut(s) 213, 472
MspR9I CCNGG 1 cut(s) 37
MvaI CCWGG 1 cut(s) 37
NcoI CCATGG 1 cut(s) 201
NdeII GATC 2 cut(s) 144, 196
NlaIII CATG 4 cut(s) 205, 265, 275, 410
NlaIV GGNNCC 2 cut(s) 192, 207
NmeAIII GCCGAG 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 148
PagI TCATGA 2 cut(s) 261, 271
PciSI GCTCTTC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 229
PflMI CCANNNNNTGG 2 cut(s) 36, 452
PfoI TCCNGGA 1 cut(s) 35
PkrI GCNGC 1 cut(s) 412
PleI GAGTC 2 cut(s) 390, 430
PpsI GAGTC 2 cut(s) 390, 430
Psp6I CCWGG 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 192, 207
PsuI RGATCY 1 cut(s) 196
SapI GCTCTTC 1 cut(s) 290
SaqAI TTAA 2 cut(s) 213, 472
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 2 cut(s) 144, 196
SchI GAGTC 2 cut(s) 391, 430
ScrFI CCNGG 1 cut(s) 37
SetI ASST 4 cut(s) 15, 91, 99, 155
SfcI CTRYAG 1 cut(s) 312
Sse9I AATT 6 cut(s) 50, 67, 173, 182, 326, 469
StyD4I CCNGG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 316, 350
TaqI TCGA 1 cut(s) 225
TasI AATT 6 cut(s) 50, 67, 173, 182, 326, 469
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 2 cut(s) 213, 472
Tru9I TTAA 2 cut(s) 213, 472
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 3 cut(s) 144, 195, 278
TspRI CASTG 1 cut(s) 355
Van91I CCANNNNNTGG 2 cut(s) 36, 452
XapI RAATTY 3 cut(s) 50, 67, 173
XmiI GTMKAC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.