FvH4_1g18880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000234
Physical Location & Seq
Reverse (-)
11133943 .. 11136879
2937 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18880.t1

Sequence Viewer

Length: 405 bp
ATGGCGGGAAAGGACCCATATCGTCTCGAAACGGTGGCGTTTGGTTATCTTCGATCCGCAATTCGCCAATTCCCAACTCAAACTAGCTCCCCGTTCAAGTCACCGGAATGGGAGAATTGGGAACTAGTACTGCTTGACCAGTTGAAGTTTAGTGTGACAGATTCCGGGATGGAGATGATGAGGATTGAACATAAAGGCGAGCCGCTTGTTATGGGTAGGCTTGACAGGGCTTCTGAAATGACTATGTATGAGGAGAGTCTACTCCAGATTCCTGATTATCATACAGTGAAAGAGAAGGAGGAAGACACTACTCAAAATCCAAAAGATGGTCTATGCAGAAGAATAATTACAAGCTGCCTCACTCTGTTCAGATTACGCATGCAATCCTACTTTGGCATTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.66

Weight (kDa)

5.44

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 326
AccI GTMKAC 1 cut(s) 259
AciI CCGC 3 cut(s) 5, 57, 203
AclWI GGATC 1 cut(s) 48
AfaI GTAC 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 3 cut(s) 97, 145, 188
AhlI ACTAGT 1 cut(s) 124
AluBI AGCT 2 cut(s) 87, 354
AluI AGCT 2 cut(s) 87, 354
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 13
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 93
AvaII GGWCC 1 cut(s) 13
BarI GAAGNNNNNNTAC 2 cut(s) 331, 363
BbsI GAAGAC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 341
BccI CCATC 2 cut(s) 163, 320
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 29
BcuI ACTAGT 1 cut(s) 124
BfaI CTAG 2 cut(s) 84, 125
BisI GCNGC 2 cut(s) 203, 355
BlsI GCNGC 2 cut(s) 204, 356
BmcAI AGTACT 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 166
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 326
BseNI ACTGG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 266
BseXI GCAGC 1 cut(s) 341
BsiSI CCGG 2 cut(s) 104, 165
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 29
BsmBI CGTCTC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 53
BspACI CCGC 3 cut(s) 5, 57, 203
BspLI GGNNCC 1 cut(s) 15
BspPI GGATC 1 cut(s) 48
BsrI ACTGG 1 cut(s) 139
BssMI GATC 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 34, 286
BstC8I GCNNGC 2 cut(s) 200, 380
BstDEI CTNAG 1 cut(s) 402
BstF5I GGATG 1 cut(s) 174
BstKTI GATC 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 341
BstV2I GAAGAC 1 cut(s) 309
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 2 cut(s) 200, 380
Cfr13I GGNCC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 128
CviAII CATG 1 cut(s) 379
CviJI RGCY 5 cut(s) 87, 202, 220, 230, 354
CviKI_1 RGCY 5 cut(s) 87, 202, 220, 230, 354
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 1 cut(s) 402
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 13
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 1 cut(s) 382
FaiI YATR 8 cut(s) 19, 192, 212, 245, 249, 282, 334, 380
FatI CATG 1 cut(s) 378
FblI GTMKAC 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 203, 355
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 2 cut(s) 203, 355
FspBI CTAG 2 cut(s) 84, 125
GluI GCNGC 2 cut(s) 203, 355
GsuI CTGGAG 1 cut(s) 248
HapII CCGG 2 cut(s) 104, 165
Hin1II CATG 1 cut(s) 382
HinfI GANTC 3 cut(s) 161, 256, 268
HpaII CCGG 2 cut(s) 104, 165
HphI GGTGA 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 260
Hpy188I TCNGA 2 cut(s) 235, 371
Hpy188III TCNNGA 3 cut(s) 26, 265, 272
Hpy8I GTNNAC 1 cut(s) 260
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 2 cut(s) 34, 286
HpyCH4V TGCA 2 cut(s) 336, 382
HpyF3I CTNAG 1 cut(s) 402
Hsp92II CATG 1 cut(s) 382
Kzo9I GATC 1 cut(s) 53
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 6 cut(s) 117, 152, 178, 211, 278, 285
Lsp1109I GCAGC 1 cut(s) 341
MaeI CTAG 2 cut(s) 84, 125
MaeIII GTNAC 2 cut(s) 99, 154
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MboII GAAGA 3 cut(s) 41, 314, 351
MluCI AATT 4 cut(s) 60, 68, 115, 345
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 4 cut(s) 174, 244, 292, 368
MslI CAYNNNNRTG 1 cut(s) 106
MspI CCGG 2 cut(s) 104, 165
MspR9I CCNGG 1 cut(s) 166
NciI CCSGG 1 cut(s) 166
NdeII GATC 1 cut(s) 53
NlaIII CATG 1 cut(s) 382
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 2 cut(s) 99, 154
NspI RCATGY 1 cut(s) 382
PaeI GCATGC 1 cut(s) 382
PfeI GAWTC 2 cut(s) 161, 268
PflMI CCANNNNNTGG 1 cut(s) 326
PfoI TCCNGGA 1 cut(s) 164
PkrI GCNGC 2 cut(s) 204, 356
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
PpuMI RGGWCCY 1 cut(s) 13
Psp5II RGGWCCY 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 13
PspPPI RGGWCCY 1 cut(s) 13
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 106
SatI GCNGC 2 cut(s) 203, 355
Sau3AI GATC 1 cut(s) 53
Sau96I GGNCC 1 cut(s) 13
ScaI AGTACT 1 cut(s) 129
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 166
SetI ASST 2 cut(s) 89, 356
SinI GGWCC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 106
SpeI ACTAGT 1 cut(s) 124
SphI GCATGC 1 cut(s) 382
Sse9I AATT 4 cut(s) 60, 68, 115, 345
SsiI CCGC 3 cut(s) 5, 57, 203
SspMI CTAG 2 cut(s) 84, 125
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 2 cut(s) 34, 286
TaqI TCGA 2 cut(s) 27, 52
TasI AATT 4 cut(s) 60, 68, 115, 345
TatI WGTACW 1 cut(s) 127
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 2 cut(s) 161, 268
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 2 cut(s) 99, 154
TseI GCWGC 1 cut(s) 354
Tsp45I GTSAC 2 cut(s) 99, 154
TspRI CASTG 1 cut(s) 291
Van91I CCANNNNNTGG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 13
XceI RCATGY 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 259
XspI CTAG 2 cut(s) 84, 125
ZrmI AGTACT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.