Rroxscaffold_6G00420770

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000234
Physical Location & Seq
Reverse (-)
41979576 .. 41981227
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420770.1

Sequence Viewer

Length: 810 bp
ATGAATATCCTTCTTATATCTCTAGATATACAGCGGCACAGTCGGTTAAACTTCTCAGTTCTCAGGATGAGAAACAAACGCAGGGAGGATGTTGCCAGTTCCATCACTGAAGATCTCCACATGGAAATCTTAGTAAGACTCCCGGTAAAATCTCTCATTCGGTTTCAGTGTGTATGCAAGCAGTGGAGGGGTTTGATTCGCAGCTCAAGTTTTGTTACAGCACATATCAGACAACATTCCCATACCCATCTAATTACGGATGACCGCTCAAGTTTTGACCAGGTTGAGCTTTGTTACTCTCTTTTTCGTTGTGAAAGATTTGAGCAGTCCCTGGAGTTAAAACCTCCCTTTCATCCCCAACTAGACTATAATTCCCGACTAGACTACTTCAAGATATATGGTTCAACGAACGGTTTAGTGTGTCTTGCCGGGAATGTAATGGATTCAAACAGCCCTATATACGTATGGAACCCCTCTGTTAGAAAATTCAGGACTCTTCCACAACCAAGATTCGATCATTATTGTGTGGACTGTTTTCCTAAGCATGTTGATATCCCTCTCTTATTTGGATTCCACCCAGATCTAAATGACTATAAGGTGATAAGGATGATGCTGCCTGGTTCCATCAAAATGGAGGTTTATACTCTTAGCACAAACTCTTGGAAGATTATTCAAGTCATTCCACCTTGGCTCAATACCATGAAGTTTTCTACTCGATCTGAATTTTGGAATGGAATGGCATATTGGCTTGCCACCAAAGATTCAATGGTTAGGGTTGTGTCGTTTGATACTAAACAACGAAGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

269

Amino Acids

31.84

Weight (kDa)

9.44

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 35 - 71 1.9e-08 F-box domain
FBA_1 PF07734 102 - 265 6.7e-13 F-box associated beta propeller domain
FBA_3 PF08268 116 - 265 4.4e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 267
AciI CCGC 2 cut(s) 34, 265
AcsI RAATTY 3 cut(s) 485, 722, 804
AcuI CTGAAG 1 cut(s) 129
AgsI TTSAA 5 cut(s) 391, 405, 447, 674, 765
AjnI CCWGG 3 cut(s) 279, 330, 616
AjuI GAANNNNNNNTTGG 2 cut(s) 727, 759
AluBI AGCT 2 cut(s) 204, 289
AluI AGCT 2 cut(s) 204, 289
AlwNI CAGNNNCTG 1 cut(s) 331
ApeKI GCWGC 2 cut(s) 201, 613
ApoI RAATTY 3 cut(s) 485, 722, 804
AsuC2I CCSGG 2 cut(s) 143, 430
AsuHPI GGTGA 1 cut(s) 610
BbvI GCAGC 2 cut(s) 213, 600
BccI CCATC 3 cut(s) 110, 255, 632
BciT130I CCWGG 3 cut(s) 281, 332, 618
BcnI CCSGG 2 cut(s) 143, 430
BfaI CTAG 3 cut(s) 23, 362, 380
BglII AGATCT 2 cut(s) 112, 580
BisI GCNGC 3 cut(s) 35, 202, 614
BlsI GCNGC 3 cut(s) 36, 203, 615
Bme1390I CCNGG 5 cut(s) 143, 281, 332, 430, 618
BmiI GGNNCC 2 cut(s) 470, 622
BmrFI CCNGG 5 cut(s) 143, 281, 332, 430, 618
BmsI GCATC 1 cut(s) 600
BpmI CTGGAG 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 540
BpuEI CTTGAG 2 cut(s) 190, 253
BpuMI CCSGG 2 cut(s) 143, 430
BsaAI YACGTR 1 cut(s) 463
BsaJI CCNNGG 2 cut(s) 330, 686
Bse1I ACTGG 1 cut(s) 96
BseBI CCWGG 3 cut(s) 281, 332, 618
BseDI CCNNGG 2 cut(s) 330, 686
BseGI GGATG 5 cut(s) 72, 94, 265, 352, 612
BseMII CTCAG 2 cut(s) 69, 76
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 2 cut(s) 213, 600
BsiSI CCGG 2 cut(s) 143, 429
BslFI GGGAC 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 313
Bsp143I GATC 4 cut(s) 112, 514, 580, 716
BspACI CCGC 2 cut(s) 34, 265
BspCNI CTCAG 2 cut(s) 68, 75
BspLI GGNNCC 2 cut(s) 470, 622
BsrBI CCGCTC 1 cut(s) 267
BsrI ACTGG 1 cut(s) 96
BssECI CCNNGG 2 cut(s) 330, 686
BssMI GATC 4 cut(s) 112, 514, 580, 716
BssT1I CCWWGG 1 cut(s) 686
Bst2UI CCWGG 3 cut(s) 281, 332, 618
Bst4CI ACNGT 3 cut(s) 41, 413, 533
Bst6I CTCTTC 1 cut(s) 501
BstBAI YACGTR 1 cut(s) 463
BstC8I GCNNGC 2 cut(s) 179, 750
BstDEI CTNAG 5 cut(s) 55, 62, 130, 540, 647
BstF5I GGATG 5 cut(s) 72, 94, 265, 352, 612
BstKTI GATC 4 cut(s) 115, 517, 583, 719
BstMBI GATC 4 cut(s) 112, 514, 580, 716
BstNI CCWGG 3 cut(s) 281, 332, 618
BstNSI RCATGY 1 cut(s) 548
BstSCI CCNGG 5 cut(s) 141, 279, 330, 428, 616
BstSNI TACGTA 1 cut(s) 463
BstV1I GCAGC 2 cut(s) 213, 600
BstX2I RGATCY 2 cut(s) 112, 580
BstXI CCANNNNNNTGG 1 cut(s) 631
BstYI RGATCY 2 cut(s) 112, 580
BtsCI GGATG 5 cut(s) 72, 94, 265, 352, 612
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 3 cut(s) 105, 173, 188
Cac8I GCNNGC 2 cut(s) 179, 750
CaiI CAGNNNCTG 1 cut(s) 331
CsiI ACCWGGT 1 cut(s) 279
CviAII CATG 3 cut(s) 121, 545, 700
CviJI RGCY 5 cut(s) 204, 289, 453, 691, 748
CviKI_1 RGCY 5 cut(s) 204, 289, 453, 691, 748
DdeI CTNAG 5 cut(s) 55, 62, 130, 540, 647
DpnI GATC 4 cut(s) 114, 516, 582, 718
DpnII GATC 4 cut(s) 112, 514, 580, 716
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Eco105I TACGTA 1 cut(s) 463
Eco130I CCWWGG 1 cut(s) 686
Eco32I GATATC 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 129
EcoRII CCWGG 3 cut(s) 279, 330, 616
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 1 cut(s) 686
ErhI CCWWGG 1 cut(s) 686
FaeI CATG 3 cut(s) 124, 548, 703
FaqI GGGAC 1 cut(s) 313
FatI CATG 3 cut(s) 120, 544, 699
Fnu4HI GCNGC 3 cut(s) 35, 202, 614
FokI GGATG 5 cut(s) 79, 101, 272, 339, 619
Fsp4HI GCNGC 3 cut(s) 35, 202, 614
FspBI CTAG 3 cut(s) 23, 362, 380
GluI GCNGC 3 cut(s) 35, 202, 614
GsuI CTGGAG 1 cut(s) 353
HapII CCGG 2 cut(s) 143, 429
Hin1II CATG 3 cut(s) 124, 548, 703
HinfI GANTC 7 cut(s) 138, 196, 443, 493, 510, 570, 761
HpaII CCGG 2 cut(s) 143, 429
HphI GGTGA 1 cut(s) 610
Hpy166II GTNNAC 1 cut(s) 529
Hpy188I TCNGA 2 cut(s) 230, 721
Hpy188III TCNNGA 5 cut(s) 23, 64, 375, 391, 490
Hpy8I GTNNAC 1 cut(s) 529
HpyAV CCTTC 1 cut(s) 20
HpyCH4III ACNGT 3 cut(s) 41, 413, 533
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 1 cut(s) 177
HpyF3I CTNAG 5 cut(s) 55, 62, 130, 540, 647
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 3 cut(s) 124, 548, 703
Kzo9I GATC 4 cut(s) 112, 514, 580, 716
Lsp1109I GCAGC 2 cut(s) 213, 600
LweI GCATC 1 cut(s) 600
MabI ACCWGGT 1 cut(s) 279
MaeI CTAG 3 cut(s) 23, 362, 380
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 2 cut(s) 214, 293
MalI GATC 4 cut(s) 114, 516, 582, 718
MbiI CCGCTC 1 cut(s) 267
MboI GATC 4 cut(s) 112, 514, 580, 716
MboII GAAGA 3 cut(s) 122, 488, 676
MflI RGATCY 2 cut(s) 112, 580
MluCI AATT 5 cut(s) 252, 370, 485, 722, 804
MlyI GAGTC 2 cut(s) 132, 487
MnlI CCTC 6 cut(s) 79, 180, 354, 484, 567, 628
MseI TTAA 2 cut(s) 47, 338
MslI CAYNNNNRTG 2 cut(s) 522, 629
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 2 cut(s) 143, 429
MspR9I CCNGG 5 cut(s) 143, 281, 332, 430, 618
MvaI CCWGG 3 cut(s) 281, 332, 618
NciI CCSGG 2 cut(s) 143, 430
NdeII GATC 4 cut(s) 112, 514, 580, 716
NlaIII CATG 3 cut(s) 124, 548, 703
NlaIV GGNNCC 2 cut(s) 470, 622
NspI RCATGY 1 cut(s) 548
PfeI GAWTC 5 cut(s) 196, 443, 510, 570, 761
PkrI GCNGC 3 cut(s) 36, 203, 615
PleI GAGTC 2 cut(s) 132, 487
PpsI GAGTC 2 cut(s) 132, 487
Ppu21I YACGTR 1 cut(s) 463
Psp6I CCWGG 3 cut(s) 279, 330, 616
PspGI CCWGG 3 cut(s) 279, 330, 616
PspN4I GGNNCC 2 cut(s) 470, 622
PstNI CAGNNNCTG 1 cut(s) 331
PsuI RGATCY 2 cut(s) 112, 580
RseI CAYNNNNRTG 2 cut(s) 522, 629
SaqAI TTAA 2 cut(s) 47, 338
SatI GCNGC 3 cut(s) 35, 202, 614
Sau3AI GATC 4 cut(s) 112, 514, 580, 716
SchI GAGTC 2 cut(s) 132, 487
ScrFI CCNGG 5 cut(s) 143, 281, 332, 430, 618
SetI ASST 8 cut(s) 206, 285, 291, 346, 465, 600, 639, 688
SexAI ACCWGGT 1 cut(s) 279
SfaNI GCATC 1 cut(s) 600
SmiMI CAYNNNNRTG 2 cut(s) 522, 629
SmlI CTYRAG 2 cut(s) 205, 268
SmoI CTYRAG 2 cut(s) 205, 268
SnaBI TACGTA 1 cut(s) 463
Sse9I AATT 5 cut(s) 252, 370, 485, 722, 804
SsiI CCGC 2 cut(s) 34, 265
SspMI CTAG 3 cut(s) 23, 362, 380
StyD4I CCNGG 5 cut(s) 141, 279, 330, 428, 616
StyI CCWWGG 1 cut(s) 686
TaaI ACNGT 3 cut(s) 41, 413, 533
TaiI ACGT 1 cut(s) 465
TaqI TCGA 2 cut(s) 513, 715
TasI AATT 5 cut(s) 252, 370, 485, 722, 804
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 5 cut(s) 196, 443, 510, 570, 761
Tru1I TTAA 2 cut(s) 47, 338
Tru9I TTAA 2 cut(s) 47, 338
TscAI CASTG 3 cut(s) 112, 173, 188
TseI GCWGC 2 cut(s) 201, 613
TspDTI ATGAA 3 cut(s) 17, 341, 716
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 3 cut(s) 112, 173, 188
XapI RAATTY 3 cut(s) 485, 722, 804
XbaI TCTAGA 1 cut(s) 22
XceI RCATGY 1 cut(s) 548
XcmI CCANNNNNNNNNTGG 1 cut(s) 763
XspI CTAG 3 cut(s) 23, 362, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.