MD09G1281100.v1.1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000234
Physical Location & Seq
Reverse (-)
35817949 .. 35818854
906 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1281100.v1.1.491

Sequence Viewer

Length: 906 bp
ATGCGAGATTCATACGATTATCTTCTTATCCGCACTGCAAATTATCGCTTTTCGCTCTACTGTCGGGATACAGTTGCCAAGTGTTTGGATTTAGAGCTTCCGGAGCAGGAGAATATAAGTTTACGCATTAATGGTTGTTGCAATGGATTGCTTTGCCTCTCTAAGCATTTAGGTCGGTGTTTGAGGAATCCTATATATCTATGGAACCCATCAATCAGAAAATTCAAGAGGCTACCGAAAGGCCTTATTCAGCACACAATCCGTTTCGATGCAACTGGATTTGGGTTTCACAGTGGCGAAAATGACTATAAGGTTGTGAGGATTGTGAGGTTTCTGGGGAAGAAATGTATCTTCGAAGTTGAGGTTTACAGCGTTAGATTGGATGCCTGGAAACGAATTAGCGCAGTTCCTCCTCTTTCACCTAATGTCTCGTCTTTCAACACTAACGCATTTGCATACACTGATGGTGTTGTGTACTGGATTGTATTTGACCATTCTCAGCAGCGCTCTTCCATCCTTTCTTTTGATTTCGTCGGTGAGGTTTTTCAAAAGATTGTGCTTCCTGATAAGATGGGCAAAGGCATAGAGTTTTTTCACACCAGTATTGGCGTGTTTGAGAGATTAGTTTCTATGTTCCATTACAGACAAGATGGGAAGGATTACTACTGTGACATATGGGTTCTGGAAATGGAGACTTGGAAAATGATCCGCACGATTATTTTTCCAGAACGTGGATGGATAACGTGGCCATTGGGTTTTAGAGCAACTGGTGGAGTTCATATGGTTATGCTAGGTGGAGATTTCGTTTTGTATGGTCCTGAACCACGCCAACTCAACCCCCTTGGAATTAAACTTCATGATGGGTACGTCAGTGCTTATAGTGAGAGTCTGATTCTTCTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

34.92

Weight (kDa)

8.69

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 25 - 238 2e-16 F-box associated beta propeller domain
FBA_1 PF07734 35 - 228 1.3e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 731
AccIII TCCGGA 1 cut(s) 100
AciI CCGC 2 cut(s) 31, 709
AclWI GGATC 1 cut(s) 700
AcoI YGGCCR 1 cut(s) 746
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 2 cut(s) 476, 866
AfeI AGCGCT 1 cut(s) 506
AfiI CCNNNNNNNGG 1 cut(s) 731
AgsI TTSAA 3 cut(s) 226, 439, 548
AjnI CCWGG 1 cut(s) 386
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw26I GTCTC 2 cut(s) 433, 686
AlwI GGATC 1 cut(s) 700
Aor13HI TCCGGA 1 cut(s) 100
Aor51HI AGCGCT 1 cut(s) 506
AoxI GGCC 2 cut(s) 241, 746
ApeKI GCWGC 1 cut(s) 502
ApoI RAATTY 1 cut(s) 221
AseI ATTAAT 1 cut(s) 129
AspLEI GCGC 2 cut(s) 404, 507
AspS9I GGNCC 1 cut(s) 815
AsuHPI GGTGA 2 cut(s) 411, 548
AsuII TTCGAA 1 cut(s) 354
AvaII GGWCC 1 cut(s) 815
BaeI ACNNNNGTAYC 2 cut(s) 856, 889
BalI TGGCCA 1 cut(s) 748
BarI GAAGNNNNNNTAC 2 cut(s) 647, 679
BbvI GCAGC 1 cut(s) 514
BccI CCATC 7 cut(s) 217, 458, 521, 565, 644, 729, 854
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 1 cut(s) 388
BciVI GTATCC 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 433, 686
BfaI CTAG 1 cut(s) 791
BfoI RGCGCY 1 cut(s) 508
BfuI GTATCC 1 cut(s) 61
BisI GCNGC 1 cut(s) 503
BlsI GCNGC 1 cut(s) 504
Bme1390I CCNGG 1 cut(s) 388
Bme18I GGWCC 1 cut(s) 815
BmgT120I GGNCC 1 cut(s) 815
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 388
BmsI GCATC 2 cut(s) 259, 373
Bpu14I TTCGAA 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 841
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 789, 819
Bsc4I CCNNNNNNNGG 1 cut(s) 731
Bse1I ACTGG 4 cut(s) 280, 482, 600, 772
Bse3DI GCAATG 1 cut(s) 148
BseAI TCCGGA 1 cut(s) 100
BseBI CCWGG 1 cut(s) 388
BseDI CCNNGG 1 cut(s) 841
BseGI GGATG 3 cut(s) 388, 513, 740
BseLI CCNNNNNNNGG 1 cut(s) 731
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 512
BseNI ACTGG 4 cut(s) 280, 482, 600, 772
BseRI GAGGAG 1 cut(s) 402
BseXI GCAGC 1 cut(s) 514
BshFI GGCC 2 cut(s) 243, 748
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 731
BsmAI GTCTC 2 cut(s) 433, 686
BsnI GGCC 2 cut(s) 243, 748
Bsp119I TTCGAA 1 cut(s) 354
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 1 cut(s) 705
BspACI CCGC 2 cut(s) 31, 709
BspANI GGCC 2 cut(s) 243, 748
BspCNI CTCAG 1 cut(s) 511
BspEI TCCGGA 1 cut(s) 100
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 1 cut(s) 206
BspPI GGATC 1 cut(s) 700
BspQI GCTCTTC 1 cut(s) 514
BspT104I TTCGAA 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 4 cut(s) 280, 482, 600, 772
BssECI CCNNGG 1 cut(s) 841
BssMI GATC 1 cut(s) 705
BssT1I CCWWGG 1 cut(s) 841
Bst2UI CCWGG 1 cut(s) 388
Bst4CI ACNGT 4 cut(s) 62, 73, 293, 668
Bst6I CTCTTC 1 cut(s) 514
BstBI TTCGAA 1 cut(s) 354
BstDEI CTNAG 2 cut(s) 162, 498
BstF5I GGATG 3 cut(s) 388, 513, 740
BstH2I RGCGCY 1 cut(s) 508
BstHHI GCGC 2 cut(s) 404, 507
BstKTI GATC 1 cut(s) 708
BstMAI GTCTC 2 cut(s) 433, 686
BstMBI GATC 1 cut(s) 705
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 388
BstSCI CCNGG 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 514
BstXI CCANNNNNNTGG 1 cut(s) 85
BsuI GTATCC 1 cut(s) 61
BsuRI GGCC 2 cut(s) 243, 748
BtsCI GGATG 3 cut(s) 388, 513, 740
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 4 cut(s) 33, 298, 459, 877
CciI TCATGA 1 cut(s) 856
CfoI GCGC 2 cut(s) 404, 507
Cfr13I GGNCC 1 cut(s) 815
Csp6I GTAC 2 cut(s) 475, 865
CviAII CATG 1 cut(s) 857
CviJI RGCY 4 cut(s) 97, 232, 243, 748
CviKI_1 RGCY 4 cut(s) 97, 232, 243, 748
CviQI GTAC 2 cut(s) 475, 865
DdeI CTNAG 2 cut(s) 162, 498
DpnI GATC 1 cut(s) 707
DpnII GATC 1 cut(s) 705
EaeI YGGCCR 1 cut(s) 746
Eam1104I CTCTTC 1 cut(s) 514
EarI CTCTTC 1 cut(s) 514
Eco130I CCWWGG 1 cut(s) 841
Eco147I AGGCCT 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 815
Eco47III AGCGCT 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 386
EcoT14I CCWWGG 1 cut(s) 841
ErhI CCWWGG 1 cut(s) 841
FaeI CATG 1 cut(s) 860
FatI CATG 1 cut(s) 856
FauNDI CATATG 2 cut(s) 674, 780
Fnu4HI GCNGC 1 cut(s) 503
FokI GGATG 3 cut(s) 395, 500, 747
Fsp4HI GCNGC 1 cut(s) 503
FspBI CTAG 1 cut(s) 791
GlaI GCGC 2 cut(s) 403, 506
GluI GCNGC 1 cut(s) 503
HaeII RGCGCY 1 cut(s) 508
HaeIII GGCC 2 cut(s) 243, 748
HapII CCGG 1 cut(s) 101
HhaI GCGC 2 cut(s) 404, 507
Hin1II CATG 1 cut(s) 860
Hin6I GCGC 2 cut(s) 402, 505
HinP1I GCGC 2 cut(s) 402, 505
HinfI GANTC 4 cut(s) 8, 187, 886, 892
HpaII CCGG 1 cut(s) 101
HphI GGTGA 2 cut(s) 411, 548
Hpy166II GTNNAC 3 cut(s) 122, 367, 475
Hpy188I TCNGA 2 cut(s) 218, 891
Hpy188III TCNNGA 9 cut(s) 65, 101, 226, 563, 683, 725, 818, 857, 899
Hpy8I GTNNAC 3 cut(s) 122, 367, 475
Hpy99I CGWCG 1 cut(s) 536
HpyAV CCTTC 1 cut(s) 649
HpyCH4III ACNGT 4 cut(s) 62, 73, 293, 668
HpyCH4IV ACGT 3 cut(s) 730, 743, 867
HpyCH4V TGCA 4 cut(s) 38, 141, 272, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 2 cut(s) 162, 498
HpySE526I ACGT 3 cut(s) 730, 743, 867
Hsp92II CATG 1 cut(s) 860
HspAI GCGC 2 cut(s) 402, 505
Kpn2I TCCGGA 1 cut(s) 100
Kzo9I GATC 1 cut(s) 705
LguI GCTCTTC 1 cut(s) 514
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 1 cut(s) 514
LweI GCATC 2 cut(s) 259, 373
MaeI CTAG 1 cut(s) 791
MaeII ACGT 3 cut(s) 730, 743, 867
MaeIII GTNAC 1 cut(s) 668
MalI GATC 1 cut(s) 707
MboI GATC 1 cut(s) 705
MboII GAAGA 5 cut(s) 14, 343, 352, 501, 887
MlsI TGGCCA 1 cut(s) 748
MluCI AATT 4 cut(s) 40, 221, 396, 846
MluNI TGGCCA 1 cut(s) 748
MlyI GAGTC 1 cut(s) 895
MnlI CCTC 9 cut(s) 167, 177, 222, 312, 321, 355, 420, 423, 532
Mox20I TGGCCA 1 cut(s) 748
MroI TCCGGA 1 cut(s) 100
MscI TGGCCA 1 cut(s) 748
MseI TTAA 2 cut(s) 129, 849
Msp20I TGGCCA 1 cut(s) 748
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 388
MvaI CCWGG 1 cut(s) 388
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeI CATATG 2 cut(s) 674, 780
NdeII GATC 1 cut(s) 705
NlaIII CATG 1 cut(s) 860
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 668
NspV TTCGAA 1 cut(s) 354
PagI TCATGA 1 cut(s) 856
PceI AGGCCT 1 cut(s) 243
PciSI GCTCTTC 1 cut(s) 514
PfeI GAWTC 3 cut(s) 8, 187, 892
PflMI CCANNNNNTGG 1 cut(s) 731
PkrI GCNGC 1 cut(s) 504
PleI GAGTC 1 cut(s) 894
PpsI GAGTC 1 cut(s) 894
PshBI ATTAAT 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 815
RsaI GTAC 2 cut(s) 476, 866
RsaNI GTAC 2 cut(s) 475, 865
SapI GCTCTTC 1 cut(s) 514
SaqAI TTAA 2 cut(s) 129, 849
SatI GCNGC 1 cut(s) 503
Sau3AI GATC 1 cut(s) 705
Sau96I GGNCC 1 cut(s) 815
SchI GAGTC 1 cut(s) 895
ScrFI CCNGG 1 cut(s) 388
SfaNI GCATC 2 cut(s) 259, 373
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 1 cut(s) 815
Sse9I AATT 4 cut(s) 40, 221, 396, 846
SseBI AGGCCT 1 cut(s) 243
SsiI CCGC 2 cut(s) 31, 709
SspMI CTAG 1 cut(s) 791
StuI AGGCCT 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 386
StyI CCWWGG 1 cut(s) 841
TaaI ACNGT 4 cut(s) 62, 73, 293, 668
TaiI ACGT 3 cut(s) 733, 746, 870
TaqI TCGA 3 cut(s) 267, 354, 900
TasI AATT 4 cut(s) 40, 221, 396, 846
TatI WGTACW 1 cut(s) 474
TfiI GAWTC 3 cut(s) 8, 187, 892
Tru1I TTAA 2 cut(s) 129, 849
Tru9I TTAA 2 cut(s) 129, 849
TscAI CASTG 4 cut(s) 40, 298, 466, 877
TseFI GTSAC 1 cut(s) 668
TseI GCWGC 1 cut(s) 502
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 2 cut(s) 767, 845
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 4 cut(s) 40, 298, 466, 877
Van91I CCANNNNNTGG 1 cut(s) 731
VpaK11BI GGWCC 1 cut(s) 815
VspI ATTAAT 1 cut(s) 129
XapI RAATTY 1 cut(s) 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 732
XspI CTAG 1 cut(s) 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.