Prupe.3G047100_v2.0.a1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000234
Physical Location & Seq
Forward (+)
3344397 .. 3345766
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G047100.1

Sequence Viewer

Length: 1131 bp
ATGTCTTCCAAACCAGGTTTTAACAAAGAAGTCTTAATGGACATCCTTCTCAGGCTACCTCCGAAGCCCCTCGTTCGGTTTCTTTGCTCCTGCAAATTCTGGAATGATTTGATTAGCAGCTCACTTTTTGTTACAACACATTTTAATTTAAATGCAACAAGACGTGACAACATTTTTCTACTTTGCCTCCACCACCAAGATTTTGAACGTAAATTCGATGTTGACGACCCTTTTGTGAAACAAGACCTTCAGTGGTCACTTTTTTCCAATGAAACATTTGAGCAGCGTTTCAAGTTAAAGCATCCCTTAGGGAGCACAGAGCATTATGGGATATACGGTTCAAGCAACGGGGTACTTTGCATTTCGGATGAAATATTGAAACCCAAGAGCCGTATACACATATGGAACCCAACCATCGGCAAGTATAGGACTGTTCCGTTGAGCATCACCGACGACACGAAATTTGGCTACATTGCTCTCCAATTCGGGTTCCACCCCGGGGTTAATGACTACAAGGTTGTGAGGATGATGTGCATGGACAACAAAGCATTCGCCGTCGAGGTTTATAGTCTTGCCACAAACTCTTGGAAGATGATTGAAGATGTTCCTCCATGGTTAAAATGCACTTGGGAGCATCATCAAAGCACATTTTTGAATGGAGTTACATACACCATTATTGATAAATGCCCTATAATCACCATTGTGTCCTTCGATTTGGGTAGCGAAAAATTCGAAGAGTTCGTACTTCCTGATGCCATTTGGGGTATATGGGGGTTACAGATTGGCATTTACAAGGAACAAATTTGCTTGCTCTATGGAAATTATTGCTGCGAGGAGGAGGGCATGGATAAAAATGATTTTTGGGTTCTACAAAAGAAAGGGTGGAAAAAATTGAGGCCCTTTGTTTTTTCTTCTGATCGCTGCTATTCAACAATGGGGATCAGTGTTGACGATGAACTCTTACTCGAAAAGAATGATTTCACAGTGGGTGCAGCAGATTTGTATTTGTGTAATTATGAATCCAGGCAGATTCGTGAAACAGGTATTAAGTTGGCCTACATGCGTTATGGCCAAAATGAATTATTGTTTGCAATTACTTACGTAGAAACTTTAGGTTTTCTCGATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

377

Amino Acids

43.8

Weight (kDa)

5.77

Isoelectric Point (pI)

35.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 394
AclWI GGATC 1 cut(s) 947
AcoI YGGCCR 1 cut(s) 1069
AcsI RAATTY 5 cut(s) 95, 212, 461, 728, 801
AcuI CTGAAG 1 cut(s) 233
AfaI GTAC 2 cut(s) 354, 744
AfiI CCNNNNNNNGG 3 cut(s) 75, 416, 499
AgsI TTSAA 7 cut(s) 206, 292, 342, 379, 599, 655, 930
AjiI CACGTC 1 cut(s) 164
AjnI CCWGG 2 cut(s) 13, 1022
AleI CACNNNNGTG 1 cut(s) 701
AloI GAACNNNNNNTCC 2 cut(s) 322, 354
AluBI AGCT 1 cut(s) 120
AluI AGCT 1 cut(s) 120
Alw21I GWGCWC 1 cut(s) 317
AlwI GGATC 1 cut(s) 947
Ama87I CYCGRG 1 cut(s) 497
AoxI GGCC 3 cut(s) 896, 1053, 1069
ApeKI GCWGC 5 cut(s) 117, 283, 828, 921, 992
ApoI RAATTY 5 cut(s) 95, 212, 461, 728, 801
ArsI GACNNNNNNTTYG 4 cut(s) 215, 247, 446, 478
Asp700I GAANNNNTTC 2 cut(s) 603, 977
AspS9I GGNCC 1 cut(s) 897
AsuC2I CCSGG 2 cut(s) 498, 499
AsuHPI GGTGA 2 cut(s) 439, 688
AsuII TTCGAA 1 cut(s) 732
AvaI CYCGRG 1 cut(s) 497
AxyI CCTNAGG 1 cut(s) 307
BalI TGGCCA 1 cut(s) 1071
BarI GAAGNNNNNNTAC 2 cut(s) 726, 758
Bbv12I GWGCWC 1 cut(s) 317
BbvI GCAGC 5 cut(s) 129, 295, 815, 908, 1004
BccI CCATC 1 cut(s) 422
BceAI ACGGC 2 cut(s) 375, 539
BciT130I CCWGG 2 cut(s) 15, 1024
BcnI CCSGG 2 cut(s) 498, 499
BisI GCNGC 5 cut(s) 118, 284, 829, 922, 993
BlsI GCNGC 5 cut(s) 119, 285, 830, 923, 994
Bme1390I CCNGG 4 cut(s) 15, 498, 499, 1024
BmeT110I CYCGRG 1 cut(s) 497
BmgBI CACGTC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 897
BmiI GGNNCC 2 cut(s) 407, 491
BmrFI CCNGG 4 cut(s) 15, 498, 499, 1024
BmsI GCATC 4 cut(s) 310, 453, 643, 742
Bpu14I TTCGAA 1 cut(s) 732
BpuMI CCSGG 2 cut(s) 498, 499
BsaAI YACGTR 1 cut(s) 1102
BsaJI CCNNGG 4 cut(s) 496, 497, 498, 611
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 416, 499
Bse21I CCTNAGG 1 cut(s) 307
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 2 cut(s) 15, 1024
BseDI CCNNGG 4 cut(s) 496, 497, 498, 611
BseGI GGATG 4 cut(s) 42, 301, 373, 531
BseLI CCNNNNNNNGG 3 cut(s) 75, 416, 499
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 1 cut(s) 64
BseRI GAGGAG 2 cut(s) 848, 851
BseXI GCAGC 5 cut(s) 129, 295, 815, 908, 1004
BsgI GTGCAG 1 cut(s) 1011
BshFI GGCC 3 cut(s) 898, 1055, 1071
BsiHKAI GWGCWC 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 497
BsiSI CCGG 1 cut(s) 498
BslI CCNNNNNNNGG 3 cut(s) 75, 416, 499
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 3 cut(s) 898, 1055, 1071
BsoBI CYCGRG 1 cut(s) 497
Bsp119I TTCGAA 1 cut(s) 732
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 2 cut(s) 916, 939
Bsp19I CCATGG 1 cut(s) 611
BspANI GGCC 3 cut(s) 898, 1055, 1071
BspCNI CTCAG 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 407, 491
BspPI GGATC 1 cut(s) 947
BspT104I TTCGAA 1 cut(s) 732
BsrDI GCAATG 1 cut(s) 471
BssECI CCNNGG 4 cut(s) 496, 497, 498, 611
BssMI GATC 2 cut(s) 916, 939
BssNAI GTATAC 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 611
Bst1107I GTATAC 1 cut(s) 395
Bst2UI CCWGG 2 cut(s) 15, 1024
Bst4CI ACNGT 3 cut(s) 338, 433, 985
Bst6I CTCTTC 1 cut(s) 729
BstBAI YACGTR 1 cut(s) 1102
BstBI TTCGAA 1 cut(s) 732
BstC8I GCNNGC 1 cut(s) 809
BstDEI CTNAG 2 cut(s) 50, 307
BstDSI CCRYGG 1 cut(s) 611
BstF5I GGATG 4 cut(s) 42, 301, 373, 531
BstKTI GATC 2 cut(s) 919, 942
BstMBI GATC 2 cut(s) 916, 939
BstNI CCWGG 2 cut(s) 15, 1024
BstNSI RCATGY 1 cut(s) 1063
BstSCI CCNGG 4 cut(s) 13, 496, 497, 1022
BstSNI TACGTA 1 cut(s) 1102
BstV1I GCAGC 5 cut(s) 129, 295, 815, 908, 1004
BstZ17I GTATAC 1 cut(s) 395
Bsu36I CCTNAGG 1 cut(s) 307
BsuRI GGCC 3 cut(s) 898, 1055, 1071
BtgI CCRYGG 1 cut(s) 611
BtrI CACGTC 1 cut(s) 164
BtsCI GGATG 4 cut(s) 42, 301, 373, 531
BtsIMutI CAGTG 3 cut(s) 257, 949, 990
Cac8I GCNNGC 1 cut(s) 809
Cfr13I GGNCC 1 cut(s) 897
Cfr9I CCCGGG 1 cut(s) 497
CsiI ACCWGGT 1 cut(s) 13
Csp6I GTAC 2 cut(s) 353, 743
CviAII CATG 4 cut(s) 535, 612, 844, 1060
CviJI RGCY 8 cut(s) 55, 67, 120, 390, 468, 898, 1055, 1071
CviKI_1 RGCY 8 cut(s) 55, 67, 120, 390, 468, 898, 1055, 1071
CviQI GTAC 2 cut(s) 353, 743
DdeI CTNAG 2 cut(s) 50, 307
DpnI GATC 2 cut(s) 918, 941
DpnII GATC 2 cut(s) 916, 939
DraI TTTAAA 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 1069
Eam1104I CTCTTC 1 cut(s) 729
EarI CTCTTC 1 cut(s) 729
Eco105I TACGTA 1 cut(s) 1102
Eco130I CCWWGG 1 cut(s) 611
Eco57I CTGAAG 1 cut(s) 233
Eco81I CCTNAGG 1 cut(s) 307
Eco88I CYCGRG 1 cut(s) 497
EcoO109I RGGNCCY 1 cut(s) 897
EcoRII CCWGG 2 cut(s) 13, 1022
EcoT14I CCWWGG 1 cut(s) 611
ErhI CCWWGG 1 cut(s) 611
FaeI CATG 4 cut(s) 538, 615, 847, 1063
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FatI CATG 4 cut(s) 534, 611, 843, 1059
FauNDI CATATG 1 cut(s) 401
FblI GTMKAC 1 cut(s) 394
Fnu4HI GCNGC 5 cut(s) 118, 284, 829, 922, 993
FokI GGATG 4 cut(s) 29, 288, 380, 538
Fsp4HI GCNGC 5 cut(s) 118, 284, 829, 922, 993
GluI GCNGC 5 cut(s) 118, 284, 829, 922, 993
HaeIII GGCC 3 cut(s) 898, 1055, 1071
HapII CCGG 1 cut(s) 498
Hin1II CATG 4 cut(s) 538, 615, 847, 1063
HincII GTYRAC 2 cut(s) 223, 949
HindII GTYRAC 2 cut(s) 223, 949
HinfI GANTC 2 cut(s) 1019, 1030
HpaII CCGG 1 cut(s) 498
HphI GGTGA 2 cut(s) 439, 688
Hpy166II GTNNAC 3 cut(s) 223, 395, 949
Hpy188I TCNGA 3 cut(s) 63, 367, 916
Hpy188III TCNNGA 4 cut(s) 100, 749, 1034, 1121
Hpy8I GTNNAC 3 cut(s) 223, 395, 949
Hpy99I CGWCG 2 cut(s) 455, 560
HpyAV CCTTC 3 cut(s) 56, 257, 718
HpyCH4III ACNGT 3 cut(s) 338, 433, 985
HpyCH4IV ACGT 3 cut(s) 163, 208, 1101
HpyCH4V TGCA 7 cut(s) 93, 155, 360, 534, 624, 992, 1091
HpyF3I CTNAG 2 cut(s) 50, 307
HpySE526I ACGT 3 cut(s) 163, 208, 1101
Hsp92II CATG 4 cut(s) 538, 615, 847, 1063
Kzo9I GATC 2 cut(s) 916, 939
LmnI GCTCC 3 cut(s) 92, 312, 631
LpnPI CCDG 9 cut(s) 27, 37, 85, 103, 511, 762, 1009, 1026, 1036
Lsp1109I GCAGC 5 cut(s) 129, 295, 815, 908, 1004
LweI GCATC 4 cut(s) 310, 453, 643, 742
MabI ACCWGGT 1 cut(s) 13
MaeII ACGT 3 cut(s) 163, 208, 1101
MaeIII GTNAC 5 cut(s) 130, 164, 255, 661, 774
MalI GATC 2 cut(s) 918, 941
MboI GATC 2 cut(s) 916, 939
MboII GAAGA 4 cut(s) 601, 611, 746, 903
MhlI GDGCHC 1 cut(s) 317
MlsI TGGCCA 1 cut(s) 1071
MluNI TGGCCA 1 cut(s) 1071
Mox20I TGGCCA 1 cut(s) 1071
MroXI GAANNNNTTC 2 cut(s) 603, 977
MscI TGGCCA 1 cut(s) 1071
MseI TTAA 9 cut(s) 21, 35, 144, 149, 296, 504, 617, 1047, 1129
MslI CAYNNNNRTG 1 cut(s) 701
Msp20I TGGCCA 1 cut(s) 1071
MspI CCGG 1 cut(s) 498
MspR9I CCNGG 4 cut(s) 15, 498, 499, 1024
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 2 cut(s) 15, 1024
NciI CCSGG 2 cut(s) 498, 499
NcoI CCATGG 1 cut(s) 611
NdeI CATATG 1 cut(s) 401
NdeII GATC 2 cut(s) 916, 939
NlaIII CATG 4 cut(s) 538, 615, 847, 1063
NlaIV GGNNCC 2 cut(s) 407, 491
NmuCI GTSAC 2 cut(s) 164, 255
NspI RCATGY 1 cut(s) 1063
NspV TTCGAA 1 cut(s) 732
OliI CACNNNNGTG 1 cut(s) 701
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 738
PctI GAATGC 1 cut(s) 548
PdmI GAANNNNTTC 2 cut(s) 603, 977
PfeI GAWTC 2 cut(s) 1019, 1030
PkrI GCNGC 5 cut(s) 119, 285, 830, 923, 994
Ppu21I YACGTR 1 cut(s) 1102
Psp6I CCWGG 2 cut(s) 13, 1022
PspGI CCWGG 2 cut(s) 13, 1022
PspN4I GGNNCC 2 cut(s) 407, 491
PspPI GGNCC 1 cut(s) 897
RsaI GTAC 2 cut(s) 354, 744
RsaNI GTAC 2 cut(s) 353, 743
RseI CAYNNNNRTG 1 cut(s) 701
SaqAI TTAA 9 cut(s) 21, 35, 144, 149, 296, 504, 617, 1047, 1129
SatI GCNGC 5 cut(s) 118, 284, 829, 922, 993
Sau3AI GATC 2 cut(s) 916, 939
Sau96I GGNCC 1 cut(s) 897
ScrFI CCNGG 4 cut(s) 15, 498, 499, 1024
SduI GDGCHC 1 cut(s) 317
SexAI ACCWGGT 1 cut(s) 13
SfaNI GCATC 4 cut(s) 310, 453, 643, 742
SfuI TTCGAA 1 cut(s) 732
SmaI CCCGGG 1 cut(s) 499
SmiI ATTTAAAT 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 701
SnaBI TACGTA 1 cut(s) 1102
SspI AATATT 1 cut(s) 375
StyD4I CCNGG 4 cut(s) 13, 496, 497, 1022
StyI CCWWGG 1 cut(s) 611
SwaI ATTTAAAT 1 cut(s) 150
TaaI ACNGT 3 cut(s) 338, 433, 985
TaiI ACGT 3 cut(s) 166, 211, 1104
TaqI TCGA 6 cut(s) 216, 558, 711, 732, 966, 1122
TfiI GAWTC 2 cut(s) 1019, 1030
Tru1I TTAA 9 cut(s) 21, 35, 144, 149, 296, 504, 617, 1047, 1129
Tru9I TTAA 9 cut(s) 21, 35, 144, 149, 296, 504, 617, 1047, 1129
TscAI CASTG 3 cut(s) 257, 949, 990
TseFI GTSAC 2 cut(s) 164, 255
TseI GCWGC 5 cut(s) 117, 283, 828, 921, 992
Tsp45I GTSAC 2 cut(s) 164, 255
TspDTI ATGAA 5 cut(s) 285, 384, 969, 1032, 1092
TspGWI ACGGA 1 cut(s) 426
TspMI CCCGGG 1 cut(s) 497
TspRI CASTG 3 cut(s) 257, 949, 990
XapI RAATTY 5 cut(s) 95, 212, 461, 728, 801
XceI RCATGY 1 cut(s) 1063
XmaI CCCGGG 1 cut(s) 497
XmiI GTMKAC 1 cut(s) 394
XmnI GAANNNNTTC 2 cut(s) 603, 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.