RLG00000017439

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000234
Physical Location & Seq
Reverse (-)
16771760 .. 16773638
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017439

Sequence Viewer

Length: 894 bp
ATGTTGACCCTCAAATATGAAAGAAAGCTAAGAAGAGGTACAACTTCACGACTGAAGTTTGGAAACCTACCCGAAGAAGCAAAGTTTGAAATCTTTGCAAGACTACCTCTGAAGTCCTTAGTGCAGTTTCATTGCTTTTGCAAATCGTGGAAGAACATAACTAGCAGCCCACTTTTTAAAAACTTCCATCACAAAACAAACTTCATGAGGAAAAGTAGTGCGAATTATGAGTTTCAACTTATCCGCACTGACCAGAGAGAGTACTTGTCCCTCTTTTGTGCTGAGACATACACCAAGTGCTTGGATTTAGAGTTTCCCGAGCACGAACTAGGTCCAACCTTCTATGCATGTCCATGGTTCAGAAGATTCAAGGAACTACCTAAAGGCCTCCTCCATGAGTATGACTATGGAGGATTCCCGGAATATAGTACTTTTCTTGGATTTGGATTCCAACAAGAGGAAAACGATTATAAAATTGTGAAAATTCATCAATTAATCAGAGGGGAAATTGTTTATGATGAAGTTGAGAGCCCTAGGGTCTTGAGTCCAGCGCGTCGGCATCTCATTGCCGTCTGTTTCAGCCCGGGGAGCTCTCGTCGTGGGTTGTGGTGGCAGAAGGTTGGAACGATTCTGGCTTGTCTTGGTGGGATCGACGTTCTGCAGCGCGGAGCTAGATCGAGGTCAGCCTCCGGTGTTGGGTGTATCCGTTTTGATCAGTACAGCAGGGGCTTGCGGTGGTCATGGGTTGCGGAGCTTGGGATCGGCAAATTGTTGATTGGTTTGCTCTCTCTCCAGTGCCGGAGAGTCGTATACCAAGGTCGTTATGATTTTGGTGATTATCTGATCGACGAGAAATGGTGTGGTGGAAGAGTCGGCCGCCGAAGATGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

298

Amino Acids

34.81

Weight (kDa)

9.49

Isoelectric Point (pI)

56.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 21 - 63 6e-07 F-box-like
F-box PF00646 22 - 60 7.7e-09 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 471
AccI GTMKAC 1 cut(s) 810
AccII CGCG 2 cut(s) 553, 666
AciI CCGC 5 cut(s) 244, 666, 733, 749, 877
AclWI GGATC 2 cut(s) 656, 767
AcoI YGGCCR 1 cut(s) 874
AcsI RAATTY 1 cut(s) 483
AcuI CTGAAG 2 cut(s) 74, 131
AdeI CACNNNGTG 1 cut(s) 297
AfaI GTAC 4 cut(s) 40, 263, 430, 719
AfiI CCNNNNNNNGG 2 cut(s) 457, 696
AgsI TTSAA 3 cut(s) 89, 236, 370
AluBI AGCT 4 cut(s) 28, 591, 671, 754
AluI AGCT 4 cut(s) 28, 591, 671, 754
Alw21I GWGCWC 2 cut(s) 324, 593
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 2 cut(s) 656, 767
Ama87I CYCGRG 2 cut(s) 317, 583
AoxI GGCC 2 cut(s) 385, 874
ApeKI GCWGC 2 cut(s) 165, 661
ApoI RAATTY 1 cut(s) 483
AseI ATTAAT 1 cut(s) 494
AspA2I CCTAGG 1 cut(s) 533
AspLEI GCGC 2 cut(s) 553, 666
AspS9I GGNCC 1 cut(s) 332
AsuC2I CCSGG 3 cut(s) 419, 584, 585
AsuHPI GGTGA 1 cut(s) 845
AvaI CYCGRG 2 cut(s) 317, 583
AvaII GGWCC 1 cut(s) 332
AvrII CCTAGG 1 cut(s) 533
BanII GRGCYC 2 cut(s) 533, 593
Bbv12I GWGCWC 2 cut(s) 324, 593
BbvI GCAGC 2 cut(s) 177, 673
BccI CCATC 1 cut(s) 195
BceAI ACGGC 1 cut(s) 554
BciVI GTATCC 1 cut(s) 713
BclI TGATCA 1 cut(s) 712
BcnI CCSGG 3 cut(s) 419, 584, 585
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 4 cut(s) 162, 329, 534, 672
BfmI CTRYAG 1 cut(s) 659
BfuI GTATCC 1 cut(s) 713
BisI GCNGC 3 cut(s) 166, 662, 877
BlnI CCTAGG 1 cut(s) 533
BlsI GCNGC 3 cut(s) 167, 663, 878
BmcAI AGTACT 2 cut(s) 263, 430
Bme1390I CCNGG 3 cut(s) 419, 584, 585
Bme18I GGWCC 1 cut(s) 332
BmeT110I CYCGRG 2 cut(s) 317, 583
BmgT120I GGNCC 1 cut(s) 332
BmrFI CCNGG 3 cut(s) 419, 584, 585
BmsI GCATC 1 cut(s) 568
BpmI CTGGAG 1 cut(s) 776
BpuEI CTTGAG 1 cut(s) 562
BpuMI CCSGG 3 cut(s) 419, 584, 585
BsaJI CCNNGG 5 cut(s) 353, 533, 583, 584, 814
BsaWI WCCGGW 1 cut(s) 689
BsaXI ACNNNNNCTCC 2 cut(s) 580, 610
Bsc4I CCNNNNNNNGG 2 cut(s) 457, 696
Bse1I ACTGG 1 cut(s) 793
Bse3DI GCAATG 2 cut(s) 130, 564
BseDI CCNNGG 5 cut(s) 353, 533, 583, 584, 814
BseLI CCNNNNNNNGG 2 cut(s) 457, 696
BseMI GCAATG 2 cut(s) 130, 564
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 793
BseRI GAGGAG 1 cut(s) 380
BseX3I CGGCCG 1 cut(s) 874
BseXI GCAGC 2 cut(s) 177, 673
BsgI GTGCAG 1 cut(s) 143
Bsh1236I CGCG 2 cut(s) 553, 666
Bsh1285I CGRYCG 1 cut(s) 877
BshFI GGCC 2 cut(s) 387, 876
BsiEI CGRYCG 1 cut(s) 877
BsiHKAI GWGCWC 2 cut(s) 324, 593
BsiHKCI CYCGRG 2 cut(s) 317, 583
BsiSI CCGG 4 cut(s) 419, 584, 690, 799
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 457, 696
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 2 cut(s) 387, 876
BsoBI CYCGRG 2 cut(s) 317, 583
Bsp1286I GDGCHC 3 cut(s) 324, 533, 593
Bsp143I GATC 5 cut(s) 648, 674, 712, 759, 843
Bsp19I CCATGG 1 cut(s) 353
BspACI CCGC 5 cut(s) 244, 666, 733, 749, 877
BspANI GGCC 2 cut(s) 387, 876
BspCNI CTCAG 1 cut(s) 274
BspFNI CGCG 2 cut(s) 553, 666
BspHI TCATGA 1 cut(s) 204
BspMAI CTGCAG 1 cut(s) 663
BspPI GGATC 2 cut(s) 656, 767
BsrDI GCAATG 2 cut(s) 130, 564
BsrI ACTGG 1 cut(s) 793
BssECI CCNNGG 5 cut(s) 353, 533, 583, 584, 814
BssMI GATC 5 cut(s) 648, 674, 712, 759, 843
BssNAI GTATAC 1 cut(s) 811
BssT1I CCWWGG 3 cut(s) 353, 533, 814
Bst1107I GTATAC 1 cut(s) 811
Bst6I CTCTTC 2 cut(s) 28, 862
BstC8I GCNNGC 1 cut(s) 731
BstDEI CTNAG 3 cut(s) 29, 118, 282
BstDSI CCRYGG 1 cut(s) 353
BstFNI CGCG 2 cut(s) 553, 666
BstHHI GCGC 2 cut(s) 553, 666
BstKTI GATC 5 cut(s) 651, 677, 715, 762, 846
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 5 cut(s) 648, 674, 712, 759, 843
BstMCI CGRYCG 1 cut(s) 877
BstMWI GCNNNNNNNGC 1 cut(s) 588
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 3 cut(s) 417, 582, 583
BstSFI CTRYAG 1 cut(s) 659
BstUI CGCG 2 cut(s) 553, 666
BstV1I GCAGC 2 cut(s) 177, 673
BstXI CCANNNNNNTGG 1 cut(s) 301
BstZ17I GTATAC 1 cut(s) 811
BstZI CGGCCG 1 cut(s) 874
BsuI GTATCC 1 cut(s) 713
BsuRI GGCC 2 cut(s) 387, 876
BtgI CCRYGG 1 cut(s) 353
BtsIMutI CAGTG 2 cut(s) 246, 800
Cac8I GCNNGC 1 cut(s) 731
CciI TCATGA 1 cut(s) 204
CfoI GCGC 2 cut(s) 553, 666
Cfr13I GGNCC 1 cut(s) 332
Cfr9I CCCGGG 1 cut(s) 583
CseI GACGC 1 cut(s) 542
Csp6I GTAC 4 cut(s) 39, 262, 429, 718
CviAII CATG 5 cut(s) 205, 348, 354, 395, 741
CviQI GTAC 4 cut(s) 39, 262, 429, 718
DdeI CTNAG 3 cut(s) 29, 118, 282
DpnI GATC 5 cut(s) 650, 676, 714, 761, 845
DpnII GATC 5 cut(s) 648, 674, 712, 759, 843
DraI TTTAAA 1 cut(s) 178
DraIII CACNNNGTG 1 cut(s) 297
EaeI YGGCCR 1 cut(s) 874
EagI CGGCCG 1 cut(s) 874
Eam1104I CTCTTC 2 cut(s) 28, 862
EarI CTCTTC 2 cut(s) 28, 862
Ecl136II GAGCTC 1 cut(s) 591
EclXI CGGCCG 1 cut(s) 874
Eco130I CCWWGG 3 cut(s) 353, 533, 814
Eco147I AGGCCT 1 cut(s) 387
Eco24I GRGCYC 2 cut(s) 533, 593
Eco47I GGWCC 1 cut(s) 332
Eco52I CGGCCG 1 cut(s) 874
Eco53kI GAGCTC 1 cut(s) 591
Eco57I CTGAAG 2 cut(s) 74, 131
Eco88I CYCGRG 2 cut(s) 317, 583
EcoICRI GAGCTC 1 cut(s) 591
EcoT14I CCWWGG 3 cut(s) 353, 533, 814
EcoT22I ATGCAT 1 cut(s) 349
EcoT38I GRGCYC 2 cut(s) 533, 593
ErhI CCWWGG 3 cut(s) 353, 533, 814
FaeI CATG 5 cut(s) 208, 351, 357, 398, 744
FaqI GGGAC 1 cut(s) 253
FatI CATG 5 cut(s) 204, 347, 353, 394, 740
FbaI TGATCA 1 cut(s) 712
FblI GTMKAC 1 cut(s) 810
Fnu4HI GCNGC 3 cut(s) 166, 662, 877
FriOI GRGCYC 2 cut(s) 533, 593
Fsp4HI GCNGC 3 cut(s) 166, 662, 877
FspBI CTAG 4 cut(s) 162, 329, 534, 672
GlaI GCGC 2 cut(s) 552, 665
GluI GCNGC 3 cut(s) 166, 662, 877
GsuI CTGGAG 1 cut(s) 776
HaeIII GGCC 2 cut(s) 387, 876
HapII CCGG 4 cut(s) 419, 584, 690, 799
HgaI GACGC 1 cut(s) 542
HhaI GCGC 2 cut(s) 553, 666
Hin1II CATG 5 cut(s) 208, 351, 357, 398, 744
Hin6I GCGC 2 cut(s) 551, 664
HinP1I GCGC 2 cut(s) 551, 664
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 7 cut(s) 366, 414, 447, 544, 628, 804, 870
HpaII CCGG 4 cut(s) 419, 584, 690, 799
HphI GGTGA 1 cut(s) 845
Hpy166II GTNNAC 2 cut(s) 6, 811
Hpy188I TCNGA 4 cut(s) 111, 362, 500, 843
Hpy188III TCNNGA 4 cut(s) 48, 205, 317, 541
Hpy8I GTNNAC 2 cut(s) 6, 811
Hpy99I CGWCG 4 cut(s) 558, 600, 656, 851
HpyAV CCTTC 2 cut(s) 349, 610
HpyCH4IV ACGT 1 cut(s) 654
HpyCH4V TGCA 5 cut(s) 98, 124, 141, 347, 661
HpyF10VI GCNNNNNNNGC 1 cut(s) 588
HpyF3I CTNAG 3 cut(s) 29, 118, 282
HpySE526I ACGT 1 cut(s) 654
Hsp92II CATG 5 cut(s) 208, 351, 357, 398, 744
HspAI GCGC 2 cut(s) 551, 664
Ksp22I TGATCA 1 cut(s) 712
Kzo9I GATC 5 cut(s) 648, 674, 712, 759, 843
LmnI GCTCC 3 cut(s) 588, 668, 751
LpnPI CCDG 9 cut(s) 266, 432, 561, 597, 617, 703, 709, 806, 812
Lsp1109I GCAGC 2 cut(s) 177, 673
LweI GCATC 1 cut(s) 568
MaeI CTAG 4 cut(s) 162, 329, 534, 672
MaeII ACGT 1 cut(s) 654
MalI GATC 5 cut(s) 650, 676, 714, 761, 845
MboI GATC 5 cut(s) 648, 674, 712, 759, 843
MboII GAAGA 6 cut(s) 45, 86, 163, 375, 879, 894
MhlI GDGCHC 3 cut(s) 324, 533, 593
MluCI AATT 6 cut(s) 223, 474, 483, 491, 507, 767
MlyI GAGTC 3 cut(s) 553, 813, 879
MmeI TCCRAC 3 cut(s) 359, 475, 601
Mph1103I ATGCAT 1 cut(s) 349
MseI TTAA 2 cut(s) 177, 494
MslI CAYNNNNRTG 2 cut(s) 352, 399
MspI CCGG 4 cut(s) 419, 584, 690, 799
MspR9I CCNGG 3 cut(s) 419, 584, 585
MvnI CGCG 2 cut(s) 553, 666
MwoI GCNNNNNNNGC 1 cut(s) 588
NciI CCSGG 3 cut(s) 419, 584, 585
NcoI CCATGG 1 cut(s) 353
NdeII GATC 5 cut(s) 648, 674, 712, 759, 843
NlaIII CATG 5 cut(s) 208, 351, 357, 398, 744
NsiI ATGCAT 1 cut(s) 349
NspI RCATGY 1 cut(s) 351
PagI TCATGA 1 cut(s) 204
PceI AGGCCT 1 cut(s) 387
PfeI GAWTC 4 cut(s) 366, 414, 447, 628
PfoI TCCNGGA 1 cut(s) 417
PkrI GCNGC 3 cut(s) 167, 663, 878
PleI GAGTC 3 cut(s) 552, 812, 878
PpsI GAGTC 3 cut(s) 552, 812, 878
PshBI ATTAAT 1 cut(s) 494
PsiI TTATAA 1 cut(s) 471
Psp124BI GAGCTC 1 cut(s) 593
PspPI GGNCC 1 cut(s) 332
PstI CTGCAG 1 cut(s) 663
RsaI GTAC 4 cut(s) 40, 263, 430, 719
RsaNI GTAC 4 cut(s) 39, 262, 429, 718
RseI CAYNNNNRTG 2 cut(s) 352, 399
SacI GAGCTC 1 cut(s) 593
SaqAI TTAA 2 cut(s) 177, 494
SatI GCNGC 3 cut(s) 166, 662, 877
Sau3AI GATC 5 cut(s) 648, 674, 712, 759, 843
Sau96I GGNCC 1 cut(s) 332
ScaI AGTACT 2 cut(s) 263, 430
SchI GAGTC 3 cut(s) 553, 813, 879
ScrFI CCNGG 3 cut(s) 419, 584, 585
SduI GDGCHC 3 cut(s) 324, 533, 593
SfaNI GCATC 1 cut(s) 568
SfcI CTRYAG 1 cut(s) 659
SinI GGWCC 1 cut(s) 332
SmaI CCCGGG 1 cut(s) 585
SmiMI CAYNNNNRTG 2 cut(s) 352, 399
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
Sse9I AATT 6 cut(s) 223, 474, 483, 491, 507, 767
SseBI AGGCCT 1 cut(s) 387
SsiI CCGC 5 cut(s) 244, 666, 733, 749, 877
SspMI CTAG 4 cut(s) 162, 329, 534, 672
SstI GAGCTC 1 cut(s) 593
StuI AGGCCT 1 cut(s) 387
StyD4I CCNGG 3 cut(s) 417, 582, 583
StyI CCWWGG 3 cut(s) 353, 533, 814
TaiI ACGT 1 cut(s) 657
TaqI TCGA 3 cut(s) 651, 677, 846
TasI AATT 6 cut(s) 223, 474, 483, 491, 507, 767
TatI WGTACW 3 cut(s) 261, 428, 717
TauI GCSGC 1 cut(s) 879
TfiI GAWTC 4 cut(s) 366, 414, 447, 628
Tru1I TTAA 2 cut(s) 177, 494
Tru9I TTAA 2 cut(s) 177, 494
TscAI CASTG 2 cut(s) 253, 800
TseI GCWGC 2 cut(s) 165, 661
TspDTI ATGAA 5 cut(s) 33, 119, 193, 476, 534
TspGWI ACGGA 1 cut(s) 695
TspMI CCCGGG 1 cut(s) 583
TspRI CASTG 2 cut(s) 253, 800
VpaK11BI GGWCC 1 cut(s) 332
VspI ATTAAT 1 cut(s) 494
XapI RAATTY 1 cut(s) 483
XceI RCATGY 1 cut(s) 351
XmaI CCCGGG 1 cut(s) 583
XmaJI CCTAGG 1 cut(s) 533
XmiI GTMKAC 1 cut(s) 810
XspI CTAG 4 cut(s) 162, 329, 534, 672
ZrmI AGTACT 2 cut(s) 263, 430
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.