Rw2G036090

F-box protein CPR30-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000234
Physical Location & Seq
Reverse (-)
59200409 .. 59201520
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G036090.1

Sequence Viewer

Length: 1050 bp
ATGAGTAATTTCAATTACATCCCTGAAGAAATTGTGACCGATATCCTACAGAGACTATCCTCAAAATCCCTTATTCGGTTTAGGTGTGTATGCAAGTCATGGCGAGATTTGATTCGGAGCTCAAGTTTTGCTCGGTCACATCTTAATAGGAATGTAGCGAGACGCTCCAATAGATATCTGTATGCTTACCACCAGTCCTCAATTGATGAACCAGAACATTGTCAGTACTCACTTTTCTCTACTGAAACATTTGAGCCGTGCTTGAATTTAAGACATCCCTTATGGACCAGAGAAAAATTGAGAATATATGGTTCAAGCAATGGCCTTGTGTGTATCTCTGATGAAAAACTTCATCCAAATAGTCGTATATGCATATGGAACCCATCTATTCGGAAGACTAGGACTCTTCCGAATATTGAGACAATGAGACGCATTTTTGTGAGGATTGTCCATCCTTATATAGGGAGTCCTGGAGTTGAGGTTTATACCCTTGGTACAAACTCTTGGAAGAGCATTCGGGTAACCCCTCCTTGGTTAAACTTCAATCGCATTTACTCCACAACTGCATTTTTGAATGGAACAGCATATTGGACTGCTAAGACAGGTTCAGAATATAAGATTGTAGCATTTGATGCGGGAAGTGAAGAATTTCAAGAACTGATGGTGCCAAAGAAAAATTCCTTTACGGCGCTGCAAGTGTGCGAGGAATCACTTTGCCTCTTTCAATACGAGTGGGAAAGGCTGGAATGGTCAGGAGAATGGACCATTGACTCATGGATGATGAAAGAGCGGTCTTTGAACAAGGTGGATTCAAGTTCACTCGGGAAAAGCGGATGCTATTTTCCACTCAGCTCTAGCATAGATAATAAACTACTCATTGCATATATGGATATAGATATTAGAGATGAATATCGAGTAGTGGCTGCCGAAGTGGCTTTATATAACATTGAATCCAAACAATTAAATAGAACTGGAATTAGGTTGAAGCGGCTACGTGGCGGCTTTGATGGCGGTGATTACATTGAAAGTCTGGTTTTGCTCACTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

349

Amino Acids

40.63

Weight (kDa)

8.75

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 5 - 45 2.7e-09 F-box-like
F-box PF00646 7 - 43 1.7e-11 F-box domain
FBA_1 PF07734 157 - 267 1.5e-10 F-box associated beta propeller domain
FBA_3 PF08268 159 - 243 7e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 664
AccBSI CCGCTC 1 cut(s) 790
AciI CCGC 6 cut(s) 635, 790, 831, 988, 999, 1011
AcsI RAATTY 3 cut(s) 265, 647, 676
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 2 cut(s) 227, 496
AfiI CCNNNNNNNGG 3 cut(s) 75, 461, 531
AjnI CCWGG 1 cut(s) 469
AjuI GAANNNNNNNTTGG 4 cut(s) 571, 603, 661, 693
AluBI AGCT 2 cut(s) 120, 852
AluI AGCT 2 cut(s) 120, 852
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 4 cut(s) 46, 154, 413, 421
Ama87I CYCGRG 1 cut(s) 821
AoxI GGCC 1 cut(s) 322
ApeKI GCWGC 2 cut(s) 691, 923
ApoI RAATTY 3 cut(s) 265, 647, 676
Asp700I GAANNNNTTC 2 cut(s) 348, 648
AspLEI GCGC 1 cut(s) 691
AspS9I GGNCC 2 cut(s) 285, 762
AsuHPI GGTGA 1 cut(s) 1025
AvaI CYCGRG 1 cut(s) 821
AvaII GGWCC 2 cut(s) 285, 762
BanI GGYRCC 1 cut(s) 664
BanII GRGCYC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 401
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 678, 910
BccI CCATC 4 cut(s) 391, 459, 655, 1001
BceAI ACGGC 2 cut(s) 241, 702
BciT130I CCWGG 1 cut(s) 471
BcoDI GTCTC 4 cut(s) 46, 154, 413, 421
BfaI CTAG 2 cut(s) 399, 855
BfmI CTRYAG 1 cut(s) 47
BfoI RGCGCY 1 cut(s) 692
BglI GCCNNNNNGGC 1 cut(s) 932
BisI GCNGC 4 cut(s) 692, 924, 989, 1000
BlsI GCNGC 4 cut(s) 693, 925, 990, 1001
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 471
Bme18I GGWCC 2 cut(s) 285, 762
BmeT110I CYCGRG 1 cut(s) 821
BmgT120I GGNCC 2 cut(s) 285, 762
BmiI GGNNCC 2 cut(s) 380, 666
BmrFI CCNGG 1 cut(s) 471
BmsI GCATC 2 cut(s) 622, 824
BpiI GAAGAC 1 cut(s) 401
BpmI CTGGAG 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 106
BsaAI YACGTR 1 cut(s) 995
BsaBI GATNNNNATC 1 cut(s) 909
BsaJI CCNNGG 2 cut(s) 490, 530
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 465, 495
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 461, 531
Bse1I ACTGG 2 cut(s) 193, 976
Bse3DI GCAATG 2 cut(s) 325, 876
Bse8I GATNNNNATC 1 cut(s) 909
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 2 cut(s) 490, 530
BseGI GGATG 6 cut(s) 18, 274, 352, 451, 783, 839
BseJI GATNNNNATC 1 cut(s) 909
BseLI CCNNNNNNNGG 3 cut(s) 75, 461, 531
BseMI GCAATG 2 cut(s) 325, 876
BseMII CTCAG 1 cut(s) 862
BseNI ACTGG 2 cut(s) 193, 976
BseXI GCAGC 2 cut(s) 678, 910
BshFI GGCC 1 cut(s) 324
BshNI GGYRCC 1 cut(s) 664
BsiHKAI GWGCWC 1 cut(s) 122
BsiHKCI CYCGRG 1 cut(s) 821
BslI CCNNNNNNNGG 3 cut(s) 75, 461, 531
BsmAI GTCTC 4 cut(s) 46, 154, 413, 421
BsmBI CGTCTC 2 cut(s) 154, 421
BsmI GAATGC 1 cut(s) 513
BsnI GGCC 1 cut(s) 324
BsoBI CYCGRG 1 cut(s) 821
Bsp1286I GDGCHC 1 cut(s) 122
BspACI CCGC 6 cut(s) 635, 790, 831, 988, 999, 1011
BspANI GGCC 1 cut(s) 324
BspCNI CTCAG 1 cut(s) 861
BspLI GGNNCC 2 cut(s) 380, 666
BspQI GCTCTTC 1 cut(s) 503
BspT107I GGYRCC 1 cut(s) 664
BsrBI CCGCTC 1 cut(s) 790
BsrDI GCAATG 2 cut(s) 325, 876
BsrI ACTGG 2 cut(s) 193, 976
BssECI CCNNGG 2 cut(s) 490, 530
BssT1I CCWWGG 2 cut(s) 490, 530
Bst2UI CCWGG 1 cut(s) 471
Bst6I CTCTTC 2 cut(s) 411, 503
BstAPI GCANNNNNTGC 1 cut(s) 632
BstBAI YACGTR 1 cut(s) 995
BstDEI CTNAG 2 cut(s) 597, 848
BstEII GGTNACC 1 cut(s) 520
BstENI CCTNNNNNAGG 1 cut(s) 459
BstF5I GGATG 6 cut(s) 18, 274, 352, 451, 783, 839
BstH2I RGCGCY 1 cut(s) 692
BstHHI GCGC 1 cut(s) 691
BstMAI GTCTC 4 cut(s) 46, 154, 413, 421
BstMWI GCNNNNNNNGC 3 cut(s) 632, 932, 1008
BstNI CCWGG 1 cut(s) 471
BstPI GGTNACC 1 cut(s) 520
BstSCI CCNGG 1 cut(s) 469
BstSFI CTRYAG 1 cut(s) 47
BstV1I GCAGC 2 cut(s) 678, 910
BstV2I GAAGAC 1 cut(s) 401
BsuRI GGCC 1 cut(s) 324
BtsCI GGATG 6 cut(s) 18, 274, 352, 451, 783, 839
BtsIMutI CAGTG 1 cut(s) 1041
CfoI GCGC 1 cut(s) 691
Cfr13I GGNCC 2 cut(s) 285, 762
CseI GACGC 2 cut(s) 171, 438
Csp6I GTAC 2 cut(s) 226, 495
CspCI CAANNNNNGTGG 2 cut(s) 713, 748
CviAII CATG 2 cut(s) 99, 774
CviJI RGCY 9 cut(s) 120, 256, 324, 742, 852, 923, 935, 991, 1002
CviKI_1 RGCY 9 cut(s) 120, 256, 324, 742, 852, 923, 935, 991, 1002
CviQI GTAC 2 cut(s) 226, 495
DdeI CTNAG 2 cut(s) 597, 848
Eam1104I CTCTTC 2 cut(s) 411, 503
EarI CTCTTC 2 cut(s) 411, 503
Ecl136II GAGCTC 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 490, 530
Eco24I GRGCYC 1 cut(s) 122
Eco32I GATATC 2 cut(s) 43, 176
Eco47I GGWCC 2 cut(s) 285, 762
Eco53kI GAGCTC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 821
Eco91I GGTNACC 1 cut(s) 520
EcoICRI GAGCTC 1 cut(s) 120
EcoNI CCTNNNNNAGG 1 cut(s) 459
EcoO65I GGTNACC 1 cut(s) 520
EcoRII CCWGG 1 cut(s) 469
EcoRV GATATC 2 cut(s) 43, 176
EcoT14I CCWWGG 2 cut(s) 490, 530
EcoT22I ATGCAT 1 cut(s) 374
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 2 cut(s) 490, 530
Esp3I CGTCTC 2 cut(s) 154, 421
FaeI CATG 2 cut(s) 102, 777
FatI CATG 2 cut(s) 98, 773
FauI CCCGC 1 cut(s) 628
FauNDI CATATG 1 cut(s) 374
Fnu4HI GCNGC 4 cut(s) 692, 924, 989, 1000
FokI GGATG 6 cut(s) 5, 261, 339, 438, 790, 846
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 4 cut(s) 692, 924, 989, 1000
FspBI CTAG 2 cut(s) 399, 855
GlaI GCGC 1 cut(s) 690
GluI GCNGC 4 cut(s) 692, 924, 989, 1000
GsuI CTGGAG 1 cut(s) 492
HaeII RGCGCY 1 cut(s) 692
HaeIII GGCC 1 cut(s) 324
HgaI GACGC 2 cut(s) 171, 438
HhaI GCGC 1 cut(s) 691
Hin1II CATG 2 cut(s) 102, 777
Hin6I GCGC 1 cut(s) 689
HinP1I GCGC 1 cut(s) 689
HinfI GANTC 7 cut(s) 112, 403, 466, 707, 770, 809, 950
HphI GGTGA 1 cut(s) 1025
Hpy166II GTNNAC 1 cut(s) 818
Hpy188I TCNGA 5 cut(s) 117, 340, 393, 411, 610
Hpy188III TCNNGA 3 cut(s) 653, 753, 823
Hpy8I GTNNAC 1 cut(s) 818
HpyCH4IV ACGT 1 cut(s) 994
HpyCH4V TGCA 5 cut(s) 93, 372, 566, 694, 881
HpyF10VI GCNNNNNNNGC 3 cut(s) 632, 932, 1008
HpyF3I CTNAG 2 cut(s) 597, 848
HpySE526I ACGT 1 cut(s) 994
Hsp92II CATG 2 cut(s) 102, 777
HspAI GCGC 1 cut(s) 689
LguI GCTCTTC 1 cut(s) 503
LmnI GCTCC 2 cut(s) 117, 170
Lsp1109I GCAGC 2 cut(s) 678, 910
LweI GCATC 2 cut(s) 622, 824
MaeI CTAG 2 cut(s) 399, 855
MaeII ACGT 1 cut(s) 994
MaeIII GTNAC 3 cut(s) 34, 135, 520
MbiI CCGCTC 1 cut(s) 790
MboII GAAGA 5 cut(s) 38, 398, 406, 520, 656
MfeI CAATTG 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 122
MlyI GAGTC 3 cut(s) 397, 475, 764
MnlI CCTC 7 cut(s) 70, 208, 435, 472, 537, 697, 728
Mph1103I ATGCAT 1 cut(s) 374
MroXI GAANNNNTTC 2 cut(s) 348, 648
MseI TTAA 5 cut(s) 144, 269, 536, 962, 1048
MslI CAYNNNNRTG 1 cut(s) 437
MspR9I CCNGG 1 cut(s) 471
MunI CAATTG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 513
MvaI CCWGG 1 cut(s) 471
MwoI GCNNNNNNNGC 3 cut(s) 632, 932, 1008
NdeI CATATG 1 cut(s) 374
NlaIII CATG 2 cut(s) 102, 777
NlaIV GGNNCC 2 cut(s) 380, 666
NmuCI GTSAC 2 cut(s) 34, 135
NsiI ATGCAT 1 cut(s) 374
PciSI GCTCTTC 1 cut(s) 503
PctI GAATGC 1 cut(s) 513
PdmI GAANNNNTTC 2 cut(s) 348, 648
PfeI GAWTC 4 cut(s) 112, 707, 809, 950
PfoI TCCNGGA 1 cut(s) 469
PkrI GCNGC 4 cut(s) 693, 925, 990, 1001
PleI GAGTC 3 cut(s) 397, 474, 764
PpsI GAGTC 3 cut(s) 397, 474, 764
Ppu21I YACGTR 1 cut(s) 995
Psp124BI GAGCTC 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 469
PspEI GGTNACC 1 cut(s) 520
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 2 cut(s) 380, 666
PspPI GGNCC 2 cut(s) 285, 762
RsaI GTAC 2 cut(s) 227, 496
RsaNI GTAC 2 cut(s) 226, 495
RseI CAYNNNNRTG 1 cut(s) 437
SacI GAGCTC 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 503
SaqAI TTAA 5 cut(s) 144, 269, 536, 962, 1048
SatI GCNGC 4 cut(s) 692, 924, 989, 1000
Sau96I GGNCC 2 cut(s) 285, 762
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 3 cut(s) 397, 475, 764
ScrFI CCNGG 1 cut(s) 471
SduI GDGCHC 1 cut(s) 122
SetI ASST 8 cut(s) 86, 122, 483, 607, 807, 854, 983, 997
SfaNI GCATC 2 cut(s) 622, 824
SfcI CTRYAG 1 cut(s) 47
SinI GGWCC 2 cut(s) 285, 762
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
SsiI CCGC 6 cut(s) 635, 790, 831, 988, 999, 1011
SspI AATATT 1 cut(s) 415
SspMI CTAG 2 cut(s) 399, 855
SstI GAGCTC 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 469
StyI CCWWGG 2 cut(s) 490, 530
TaiI ACGT 1 cut(s) 997
TaqI TCGA 1 cut(s) 913
TaqII GACCGA 2 cut(s) 53, 123
TatI WGTACW 1 cut(s) 225
TauI GCSGC 2 cut(s) 991, 1002
TfiI GAWTC 4 cut(s) 112, 707, 809, 950
Tru1I TTAA 5 cut(s) 144, 269, 536, 962, 1048
Tru9I TTAA 5 cut(s) 144, 269, 536, 962, 1048
TscAI CASTG 1 cut(s) 1048
TseFI GTSAC 2 cut(s) 34, 135
TseI GCWGC 2 cut(s) 691, 923
Tsp45I GTSAC 2 cut(s) 34, 135
TspDTI ATGAA 5 cut(s) 222, 341, 357, 797, 921
TspRI CASTG 1 cut(s) 1048
VpaK11BI GGWCC 2 cut(s) 285, 762
XagI CCTNNNNNAGG 1 cut(s) 459
XapI RAATTY 3 cut(s) 265, 647, 676
XmnI GAANNNNTTC 2 cut(s) 348, 648
XspI CTAG 2 cut(s) 399, 855
ZrmI AGTACT 1 cut(s) 227
Zsp2I ATGCAT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.