Rh1CG176300

Choline kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000234
Physical Location & Seq
Forward (+)
38833221 .. 38841588
8368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG176300.1

Sequence Viewer

Length: 1053 bp
ATGGGTGCCGTGGTGAATTCCATAGATAAAGACGACCGTATTCCAAAAGAAGCCAAGGAGATTCTACAATCATTGGCTACCAAGTGGGAAAATGTAGCTGATTCCACTGCCTTGCAGGTCATCCCTCTCAAGGGTGCAATGACTAACGAGGTGTTCGAAATAAAGTGGCCAACAAGCACCGGGGAAGTCTCGCGAAAGGTTGTGGTTAGGATTTACGGTGAGGGTATTGAGGTGTTCTTTGACAGGGATAATGAGATCCGAACATTTGAATACATGTCAAAGAACGGTCAGGGACCTCGTCTGCTTGGCCGTTTTCCTAATGGCCGAGTTGAAGAGTTCATCCATGCACGGACACTTTCAGCATCTGATCTACGTGATCCAGATATATCTGCTCTTATAGCTACTAAAATGAAGGAATTCCATGATCTTGAGATGCCCGGTCCAAAGGATGTCGTCCTCTGGGGCAGATTGAGATTGAATTCATGGAGAGAACTTGGTGCAGTTCTCCCCATTTGGTCCTACTCTACATACCTAAACAAATCTGCAATACATGTCAATGGAGTTGTGTACTGGATGGTAAAGGAGAAAAACTCTGCAAGATCTTTCATACTTTCTTTTGATATGGACAATGAGGTTTTCCAAAAGATGGAACTCCCTGAGAAACTAGTCGGAGGGATTGGTTCTGTTAGTATCCAAGTGTTTGAGAAATCCCTTTCTTTGATACACTTGAGAGAAGATGAGGATAATCTTGTAAGGCATGTTTCTTACTGTGACATATGGGTTATGGGACTAGAAACATGGAAAATGATTCGCACGATTCTTCTACCGCAAGTGAGACTTTATCTAGCATATGGACGTATGGCATGGCCATTGAGCTTTACAACAGATGGAGTTTATATTGTAAGGCTGGATGAAAAAGAGTTCCAAACTTTGGTTTTATATGATCCTATATCGCAAGAAGCTGAGGCAATAACTAGAGTTAAACCGGGTTTTTATGGCTACATATACATGGAGGTCCACGCTTATAAAGAAACTCTAATTTTACTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01100 ko03010 ko05231 map00564 map01100 map03010 map05231
Pfam Domains
Protein Families
Choline_kin_N Choline_kinase

Protein Analysis

350

Amino Acids

40.27

Weight (kDa)

5.57

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Choline_kinase PF01633 41 - 158 6.6e-36 Choline/ethanolamine kinase
FBA_1 PF07734 160 - 262 3.7e-09 F-box associated beta propeller domain
FBA_3 PF08268 160 - 318 4.2e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1026
Acc36I ACCTGC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 5
AccB7I CCANNNNNTGG 2 cut(s) 646, 931
AccII CGCG 1 cut(s) 193
AciI CCGC 1 cut(s) 827
AclWI GGATC 3 cut(s) 250, 371, 938
AcoI YGGCCR 4 cut(s) 167, 307, 322, 866
AcsI RAATTY 3 cut(s) 16, 416, 478
AfaI GTAC 1 cut(s) 569
AfiI CCNNNNNNNGG 4 cut(s) 130, 131, 646, 931
AflIII ACRYGT 2 cut(s) 273, 550
AgsI TTSAA 3 cut(s) 269, 332, 478
AhlI ACTAGT 1 cut(s) 664
AluBI AGCT 4 cut(s) 98, 401, 876, 962
AluI AGCT 4 cut(s) 98, 401, 876, 962
Alw26I GTCTC 2 cut(s) 193, 829
AlwI GGATC 3 cut(s) 250, 371, 938
AlwNI CAGNNNCTG 1 cut(s) 365
AoxI GGCC 4 cut(s) 167, 307, 322, 866
ApoI RAATTY 3 cut(s) 16, 416, 478
Asp700I GAANNNNTTC 1 cut(s) 416
AspS9I GGNCC 4 cut(s) 293, 440, 516, 1015
AsuC2I CCSGG 3 cut(s) 181, 438, 987
AsuHPI GGTGA 2 cut(s) 25, 230
AsuII TTCGAA 1 cut(s) 156
AvaII GGWCC 4 cut(s) 293, 440, 516, 1015
BalI TGGCCA 2 cut(s) 169, 868
BanI GGYRCC 1 cut(s) 5
BbvCI CCTCAGC 1 cut(s) 963
BccI CCATC 3 cut(s) 568, 640, 881
BceAI ACGGC 1 cut(s) 294
BciVI GTATCC 1 cut(s) 701
BcnI CCSGG 3 cut(s) 181, 438, 987
BcoDI GTCTC 2 cut(s) 193, 829
BcuI ACTAGT 1 cut(s) 664
BfaI CTAG 4 cut(s) 665, 791, 845, 975
BfuAI ACCTGC 1 cut(s) 106
BfuI GTATCC 1 cut(s) 701
BglII AGATCT 1 cut(s) 599
Bme1390I CCNGG 3 cut(s) 181, 438, 987
Bme18I GGWCC 4 cut(s) 293, 440, 516, 1015
BmgT120I GGNCC 4 cut(s) 293, 440, 516, 1015
BmiI GGNNCC 2 cut(s) 7, 294
BmrFI CCNGG 3 cut(s) 181, 438, 987
BmsI GCATC 2 cut(s) 371, 423
BplI GAGNNNNNCTC 2 cut(s) 575, 607
Bpu10I CCTNAGC 1 cut(s) 963
Bpu14I TTCGAA 1 cut(s) 156
BpuEI CTTGAG 3 cut(s) 113, 449, 748
BpuMI CCSGG 3 cut(s) 181, 438, 987
BsaAI YACGTR 1 cut(s) 374
BsaJI CCNNGG 3 cut(s) 9, 54, 180
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 131, 646, 931
Bse1I ACTGG 1 cut(s) 575
Bse3DI GCAATG 1 cut(s) 144
BseDI CCNNGG 3 cut(s) 9, 54, 180
BseGI GGATG 5 cut(s) 120, 339, 454, 579, 916
BseLI CCNNNNNNNGG 4 cut(s) 130, 131, 646, 931
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 648, 954
BseNI ACTGG 1 cut(s) 575
BsgI GTGCAG 1 cut(s) 519
Bsh1236I CGCG 1 cut(s) 193
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 4 cut(s) 169, 309, 324, 868
BshNI GGYRCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 37
BsiSI CCGG 3 cut(s) 180, 438, 986
BslFI GGGAC 2 cut(s) 306, 801
BslI CCNNNNNNNGG 4 cut(s) 130, 131, 646, 931
BsmAI GTCTC 2 cut(s) 193, 829
BsmFI GGGAC 2 cut(s) 306, 801
BsnI GGCC 4 cut(s) 169, 309, 324, 868
Bsp119I TTCGAA 1 cut(s) 156
Bsp143I GATC 6 cut(s) 255, 367, 376, 424, 599, 943
Bsp68I TCGCGA 1 cut(s) 193
BspACI CCGC 1 cut(s) 827
BspANI GGCC 4 cut(s) 169, 309, 324, 868
BspCNI CTCAG 2 cut(s) 649, 955
BspFNI CGCG 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 7, 294
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 3 cut(s) 250, 371, 938
BspT104I TTCGAA 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 1 cut(s) 575
BssECI CCNNGG 3 cut(s) 9, 54, 180
BssMI GATC 6 cut(s) 255, 367, 376, 424, 599, 943
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 4 cut(s) 38, 218, 287, 770
Bst6I CTCTTC 1 cut(s) 327
BstBAI YACGTR 1 cut(s) 374
BstBI TTCGAA 1 cut(s) 156
BstDEI CTNAG 2 cut(s) 657, 963
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 5 cut(s) 120, 339, 454, 579, 916
BstFNI CGCG 1 cut(s) 193
BstKTI GATC 6 cut(s) 258, 370, 379, 427, 602, 946
BstMAI GTCTC 2 cut(s) 193, 829
BstMBI GATC 6 cut(s) 255, 367, 376, 424, 599, 943
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNSI RCATGY 3 cut(s) 277, 554, 761
BstSCI CCNGG 3 cut(s) 179, 436, 985
BstUI CGCG 1 cut(s) 193
BstX2I RGATCY 2 cut(s) 255, 599
BstYI RGATCY 2 cut(s) 255, 599
BsuI GTATCC 1 cut(s) 701
BsuRI GGCC 4 cut(s) 169, 309, 324, 868
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 5 cut(s) 120, 339, 454, 579, 916
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
BtuMI TCGCGA 1 cut(s) 193
BveI ACCTGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 365
Cfr13I GGNCC 4 cut(s) 293, 440, 516, 1015
Csp6I GTAC 1 cut(s) 568
CviAII CATG 9 cut(s) 274, 344, 422, 483, 551, 758, 798, 864, 1009
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 2 cut(s) 657, 963
DpnI GATC 6 cut(s) 257, 369, 378, 426, 601, 945
DpnII GATC 6 cut(s) 255, 367, 376, 424, 599, 943
EaeI YGGCCR 4 cut(s) 167, 307, 322, 866
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 4 cut(s) 293, 440, 516, 1015
EcoO109I RGGNCCY 1 cut(s) 293
EcoRI GAATTC 3 cut(s) 16, 416, 478
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 9 cut(s) 277, 347, 425, 486, 554, 761, 801, 867, 1012
FalI AAGNNNNNCTT 2 cut(s) 822, 854
FaqI GGGAC 2 cut(s) 306, 801
FatI CATG 9 cut(s) 273, 343, 421, 482, 550, 757, 797, 863, 1008
FauNDI CATATG 2 cut(s) 776, 850
FokI GGATG 5 cut(s) 107, 326, 461, 586, 923
FspBI CTAG 4 cut(s) 665, 791, 845, 975
HaeIII GGCC 4 cut(s) 169, 309, 324, 868
HapII CCGG 3 cut(s) 180, 438, 986
Hin1II CATG 9 cut(s) 277, 347, 425, 486, 554, 761, 801, 867, 1012
HinfI GANTC 4 cut(s) 61, 101, 808, 817
HpaII CCGG 3 cut(s) 180, 438, 986
HphI GGTGA 2 cut(s) 25, 230
Hpy166II GTNNAC 2 cut(s) 568, 1018
Hpy188I TCNGA 3 cut(s) 260, 367, 671
Hpy188III TCNNGA 3 cut(s) 192, 380, 428
Hpy8I GTNNAC 2 cut(s) 568, 1018
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 4 cut(s) 38, 218, 287, 770
HpyCH4IV ACGT 2 cut(s) 373, 856
HpyCH4V TGCA 6 cut(s) 115, 137, 347, 500, 545, 596
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 2 cut(s) 657, 963
HpySE526I ACGT 2 cut(s) 373, 856
Hsp92II CATG 9 cut(s) 277, 347, 425, 486, 554, 761, 801, 867, 1012
Kzo9I GATC 6 cut(s) 255, 367, 376, 424, 599, 943
LweI GCATC 2 cut(s) 371, 423
MaeI CTAG 4 cut(s) 665, 791, 845, 975
MaeII ACGT 2 cut(s) 373, 856
MaeIII GTNAC 1 cut(s) 770
MalI GATC 6 cut(s) 257, 369, 378, 426, 601, 945
MboI GATC 6 cut(s) 255, 367, 376, 424, 599, 943
MboII GAAGA 3 cut(s) 344, 746, 812
MflI RGATCY 2 cut(s) 255, 599
MlsI TGGCCA 2 cut(s) 169, 868
MluCI AATT 4 cut(s) 16, 416, 478, 1038
MluNI TGGCCA 2 cut(s) 169, 868
MmeI TCCRAC 1 cut(s) 649
Mox20I TGGCCA 2 cut(s) 169, 868
MroXI GAANNNNTTC 1 cut(s) 416
MscI TGGCCA 2 cut(s) 169, 868
MseI TTAA 1 cut(s) 981
MslI CAYNNNNRTG 2 cut(s) 555, 1007
Msp20I TGGCCA 2 cut(s) 169, 868
MspI CCGG 3 cut(s) 180, 438, 986
MspR9I CCNGG 3 cut(s) 181, 438, 987
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 398
NciI CCSGG 3 cut(s) 181, 438, 987
NdeI CATATG 2 cut(s) 776, 850
NdeII GATC 6 cut(s) 255, 367, 376, 424, 599, 943
NlaIII CATG 9 cut(s) 277, 347, 425, 486, 554, 761, 801, 867, 1012
NlaIV GGNNCC 2 cut(s) 7, 294
NmeAIII GCCGAG 1 cut(s) 350
NmuCI GTSAC 1 cut(s) 770
NruI TCGCGA 1 cut(s) 193
NspI RCATGY 3 cut(s) 277, 554, 761
NspV TTCGAA 1 cut(s) 156
PciI ACATGT 2 cut(s) 273, 550
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 4 cut(s) 61, 101, 808, 817
PflFI GACNNNGTC 1 cut(s) 297
PflMI CCANNNNNTGG 2 cut(s) 646, 931
Ppu21I YACGTR 1 cut(s) 374
PpuMI RGGWCCY 1 cut(s) 293
PscI ACATGT 2 cut(s) 273, 550
PsiI TTATAA 1 cut(s) 1026
Psp5II RGGWCCY 1 cut(s) 293
PspN4I GGNNCC 2 cut(s) 7, 294
PspPI GGNCC 4 cut(s) 293, 440, 516, 1015
PspPPI RGGWCCY 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 365
PsuI RGATCY 2 cut(s) 255, 599
PsyI GACNNNGTC 1 cut(s) 297
RruI TCGCGA 1 cut(s) 193
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
RseI CAYNNNNRTG 2 cut(s) 555, 1007
SaqAI TTAA 1 cut(s) 981
Sau3AI GATC 6 cut(s) 255, 367, 376, 424, 599, 943
Sau96I GGNCC 4 cut(s) 293, 440, 516, 1015
ScrFI CCNGG 3 cut(s) 181, 438, 987
SfaNI GCATC 2 cut(s) 371, 423
SfuI TTCGAA 1 cut(s) 156
SinI GGWCC 4 cut(s) 293, 440, 516, 1015
SmiMI CAYNNNNRTG 2 cut(s) 555, 1007
SmlI CTYRAG 3 cut(s) 128, 428, 727
SmoI CTYRAG 3 cut(s) 128, 428, 727
SpeI ACTAGT 1 cut(s) 664
Sse9I AATT 4 cut(s) 16, 416, 478, 1038
SsiI CCGC 1 cut(s) 827
SspMI CTAG 4 cut(s) 665, 791, 845, 975
StyD4I CCNGG 3 cut(s) 179, 436, 985
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 4 cut(s) 38, 218, 287, 770
TaiI ACGT 2 cut(s) 376, 859
TaqI TCGA 2 cut(s) 156, 1047
TasI AATT 4 cut(s) 16, 416, 478, 1038
TatI WGTACW 1 cut(s) 567
TfiI GAWTC 4 cut(s) 61, 101, 808, 817
Tru1I TTAA 1 cut(s) 981
Tru9I TTAA 1 cut(s) 981
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 770
Tsp45I GTSAC 1 cut(s) 770
TspDTI ATGAA 5 cut(s) 328, 425, 471, 595, 927
TspGWI ACGGA 1 cut(s) 364
TspRI CASTG 1 cut(s) 112
Tth111I GACNNNGTC 1 cut(s) 297
Van91I CCANNNNNTGG 2 cut(s) 646, 931
VpaK11BI GGWCC 4 cut(s) 293, 440, 516, 1015
XapI RAATTY 3 cut(s) 16, 416, 478
XceI RCATGY 3 cut(s) 277, 554, 761
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 4 cut(s) 665, 791, 845, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.