Rw1G015690

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000234
Physical Location & Seq
Forward (+)
34905346 .. 34914032
8687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G015690.1

Sequence Viewer

Length: 1101 bp
ATGTCAACTGTGGAGCAAGGCGCACGAAGGGATGCACAGTTGTTCGAATTCATACCCGAGGAAATTATGTATGAAATCCTCACAAGATTATCAGTGAAATCTTTACTAAGATTCAGATGTGTTTGCAAGTCTTGGAACTCATTAATTACCAGTCCAAATTTCATAAACAACCATCTTGAAAGACATGATATGGATAGTTCTTGTGACTATTTACTTGTCCAGACTGGTAGTGCAAAGTCACTCTTTTGTGCAAAAACATATACGCAAATGGACTTAGATCTTCCAAGTTGCGAGATGTATCTCGGTTTCAAGGACTTCTTTGTTTATTGTTCGTGCAATGGATTGCTGTGTATCTGTGCTAACCATGGGCCTTTGAACAGTTCCATGTATATATGGAATCCATCGAACAGAAAAATCAAGAGACTTCTACATGGTCTTTACCAATATGAGGAAAAACGACTATATAGTTGTGAAGATTTACATGGGGACATTATGTACAAAGTTGATGTCTACTCCCTTAGATTGAATTCATGGAGAGAACTTGGTGCAGTTCTCCCCATTTGGTCTTACTCTACATACCTAAACAAATCTGCAATACATGTCAATGGAGTTGTGTACTGGATGGTAAAGGAGAAAAACTCTGCAAGATCTTTCATACTTTCTTTTGATATGGACAATGAGGTTTTCCAAAAGATGGAACTCCCTGAGAAACTAGTCGGAGGGATTGGTTTTGTTAGTATCCAAGTGTTTGAGACATCCCTTTCTTTGATACACTTGAGAGAAGATGAAAATCATCTTGTAAGGCATGTTTCTTACTGTGACATCTGGGTTATGGGACTGGAAACATGGAAAATGATTCGCATGATTCTTCCACCACAAGTGAGACTTTATCCAGCATATGGACGTATGGCATGGCCATTGAGCTTTACAACAGATGGAGTTTATATCGTAAGGGTGGATGAAAAAGAGTTCCAAACTTTGGTTTTATATGATCCTATATCGAAAGAATCTAAGGCAATAACTAGAGTTAAACCGGGTCTTTATGGCTACATATACATGGAGGTCCACGCTTATAAAGAATCTCTAATTGTACTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

366

Amino Acids

42.73

Weight (kDa)

6.38

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 17 - 52 2.6e-09 F-box-like
F-box PF00646 18 - 55 4.4e-12 F-box domain
FBA_3 PF08268 106 - 340 3e-09 F-box associated beta propeller domain
FBA_1 PF07734 108 - 278 4e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1074
AccB7I CCANNNNNTGG 3 cut(s) 694, 899, 979
AccI GTMKAC 1 cut(s) 510
AclWI GGATC 1 cut(s) 986
AcoI YGGCCR 1 cut(s) 914
AcsI RAATTY 3 cut(s) 47, 157, 526
AfaI GTAC 3 cut(s) 497, 617, 1092
AfiI CCNNNNNNNGG 4 cut(s) 448, 694, 899, 979
AflIII ACRYGT 1 cut(s) 598
AgsI TTSAA 4 cut(s) 179, 310, 376, 526
AhlI ACTAGT 1 cut(s) 712
AluBI AGCT 1 cut(s) 924
AluI AGCT 1 cut(s) 924
Alw26I GTCTC 3 cut(s) 415, 746, 877
AlwI GGATC 1 cut(s) 986
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 2 cut(s) 368, 914
ApoI RAATTY 3 cut(s) 47, 157, 526
ArsI GACNNNNNNTTYG 2 cut(s) 492, 524
AseI ATTAAT 1 cut(s) 143
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 368, 1063
AsuC2I CCSGG 1 cut(s) 1035
AsuII TTCGAA 1 cut(s) 45
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 1063
BalI TGGCCA 1 cut(s) 916
BccI CCATC 5 cut(s) 180, 409, 616, 688, 929
BciVI GTATCC 1 cut(s) 749
BcnI CCSGG 1 cut(s) 1035
BcoDI GTCTC 3 cut(s) 415, 746, 877
BcuI ACTAGT 1 cut(s) 712
BfaI CTAG 2 cut(s) 713, 1023
BfuI GTATCC 1 cut(s) 749
BglII AGATCT 2 cut(s) 277, 647
Bme1390I CCNGG 1 cut(s) 1035
Bme18I GGWCC 1 cut(s) 1063
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 368, 1063
BmrFI CCNGG 1 cut(s) 1035
BmsI GCATC 1 cut(s) 22
BplI GAGNNNNNCTC 2 cut(s) 623, 655
Bpu14I TTCGAA 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 796
BpuMI CCSGG 1 cut(s) 1035
BsaBI GATNNNNATC 1 cut(s) 789
BsaJI CCNNGG 2 cut(s) 57, 364
Bsc4I CCNNNNNNNGG 4 cut(s) 448, 694, 899, 979
Bse1I ACTGG 4 cut(s) 150, 229, 623, 843
Bse3DI GCAATG 1 cut(s) 343
Bse8I GATNNNNATC 1 cut(s) 789
BseDI CCNNGG 2 cut(s) 57, 364
BseGI GGATG 4 cut(s) 37, 627, 755, 964
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 4 cut(s) 448, 694, 899, 979
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 1 cut(s) 696
BseNI ACTGG 4 cut(s) 150, 229, 623, 843
BsgI GTGCAG 1 cut(s) 567
BshFI GGCC 2 cut(s) 370, 916
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 1034
BslFI GGGAC 2 cut(s) 500, 849
BslI CCNNNNNNNGG 4 cut(s) 448, 694, 899, 979
BsmAI GTCTC 3 cut(s) 415, 746, 877
BsmFI GGGAC 2 cut(s) 500, 849
BsnI GGCC 2 cut(s) 370, 916
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 45
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 3 cut(s) 277, 647, 991
Bsp19I CCATGG 1 cut(s) 364
BspANI GGCC 2 cut(s) 370, 916
BspCNI CTCAG 1 cut(s) 697
BspPI GGATC 1 cut(s) 986
BspT104I TTCGAA 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 343
BsrGI TGTACA 1 cut(s) 495
BsrI ACTGG 4 cut(s) 150, 229, 623, 843
BssECI CCNNGG 2 cut(s) 57, 364
BssMI GATC 3 cut(s) 277, 647, 991
BssT1I CCWWGG 1 cut(s) 364
Bst4CI ACNGT 4 cut(s) 10, 39, 380, 818
BstAUI TGTACA 1 cut(s) 495
BstBI TTCGAA 1 cut(s) 45
BstDEI CTNAG 5 cut(s) 107, 274, 518, 705, 1011
BstDSI CCRYGG 1 cut(s) 364
BstF5I GGATG 4 cut(s) 37, 627, 755, 964
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 3 cut(s) 280, 650, 994
BstMAI GTCTC 3 cut(s) 415, 746, 877
BstMBI GATC 3 cut(s) 277, 647, 991
BstNSI RCATGY 2 cut(s) 602, 809
BstSCI CCNGG 1 cut(s) 1033
BstX2I RGATCY 2 cut(s) 277, 647
BstYI RGATCY 2 cut(s) 277, 647
BsuI GTATCC 1 cut(s) 749
BsuRI GGCC 2 cut(s) 370, 916
BtgI CCRYGG 1 cut(s) 364
BtsCI GGATG 4 cut(s) 37, 627, 755, 964
BtsIMutI CAGTG 1 cut(s) 99
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 368, 1063
Csp6I GTAC 3 cut(s) 496, 616, 1091
CviJI RGCY 4 cut(s) 370, 916, 924, 1047
CviKI_1 RGCY 4 cut(s) 370, 916, 924, 1047
CviQI GTAC 3 cut(s) 496, 616, 1091
DdeI CTNAG 5 cut(s) 107, 274, 518, 705, 1011
DpnI GATC 3 cut(s) 279, 649, 993
DpnII GATC 3 cut(s) 277, 647, 991
EaeI YGGCCR 1 cut(s) 914
Eco130I CCWWGG 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 1063
Eco88I CYCGRG 1 cut(s) 56
EcoRI GAATTC 2 cut(s) 47, 526
EcoT14I CCWWGG 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 364
FalI AAGNNNNNCTT 6 cut(s) 227, 259, 302, 334, 870, 902
FaqI GGGAC 2 cut(s) 500, 849
FauNDI CATATG 1 cut(s) 898
FblI GTMKAC 1 cut(s) 510
FokI GGATG 4 cut(s) 44, 634, 742, 971
FspBI CTAG 2 cut(s) 713, 1023
GlaI GCGC 1 cut(s) 22
HaeIII GGCC 2 cut(s) 370, 916
HapII CCGG 1 cut(s) 1034
HhaI GCGC 1 cut(s) 23
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 6 cut(s) 111, 397, 856, 865, 1007, 1079
HpaII CCGG 1 cut(s) 1034
Hpy166II GTNNAC 4 cut(s) 6, 511, 616, 1066
Hpy188I TCNGA 2 cut(s) 116, 719
Hpy188III TCNNGA 3 cut(s) 176, 220, 418
Hpy8I GTNNAC 4 cut(s) 6, 511, 616, 1066
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 4 cut(s) 10, 39, 380, 818
HpyCH4IV ACGT 1 cut(s) 904
HpyCH4V TGCA 8 cut(s) 35, 126, 233, 251, 336, 548, 593, 644
HpyF3I CTNAG 5 cut(s) 107, 274, 518, 705, 1011
HpySE526I ACGT 1 cut(s) 904
HspAI GCGC 1 cut(s) 21
Kzo9I GATC 3 cut(s) 277, 647, 991
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 9 cut(s) 163, 210, 233, 604, 717, 811, 824, 906, 1047
LweI GCATC 1 cut(s) 22
MaeI CTAG 2 cut(s) 713, 1023
MaeII ACGT 1 cut(s) 904
MaeIII GTNAC 3 cut(s) 203, 237, 818
MalI GATC 3 cut(s) 279, 649, 993
MboI GATC 3 cut(s) 277, 647, 991
MboII GAAGA 4 cut(s) 272, 485, 794, 860
MflI RGATCY 2 cut(s) 277, 647
MlsI TGGCCA 1 cut(s) 916
MluCI AATT 6 cut(s) 47, 63, 144, 157, 526, 1086
MluNI TGGCCA 1 cut(s) 916
MmeI TCCRAC 1 cut(s) 697
MnlI CCTC 6 cut(s) 52, 89, 442, 673, 713, 1054
Mox20I TGGCCA 1 cut(s) 916
MscI TGGCCA 1 cut(s) 916
MseI TTAA 2 cut(s) 143, 1029
MslI CAYNNNNRTG 2 cut(s) 603, 1055
Msp20I TGGCCA 1 cut(s) 916
MspI CCGG 1 cut(s) 1034
MspR9I CCNGG 1 cut(s) 1035
NciI CCSGG 1 cut(s) 1035
NcoI CCATGG 1 cut(s) 364
NdeI CATATG 1 cut(s) 898
NdeII GATC 3 cut(s) 277, 647, 991
NmuCI GTSAC 3 cut(s) 203, 237, 818
NspI RCATGY 2 cut(s) 602, 809
NspV TTCGAA 1 cut(s) 45
PciI ACATGT 1 cut(s) 598
PfeI GAWTC 6 cut(s) 111, 397, 856, 865, 1007, 1079
PflMI CCANNNNNTGG 3 cut(s) 694, 899, 979
PscI ACATGT 1 cut(s) 598
PshBI ATTAAT 1 cut(s) 143
PsiI TTATAA 1 cut(s) 1074
PspPI GGNCC 2 cut(s) 368, 1063
PsuI RGATCY 2 cut(s) 277, 647
RsaI GTAC 3 cut(s) 497, 617, 1092
RsaNI GTAC 3 cut(s) 496, 616, 1091
RseI CAYNNNNRTG 2 cut(s) 603, 1055
SaqAI TTAA 2 cut(s) 143, 1029
Sau3AI GATC 3 cut(s) 277, 647, 991
Sau96I GGNCC 2 cut(s) 368, 1063
ScrFI CCNGG 1 cut(s) 1035
SetI ASST 5 cut(s) 582, 684, 907, 926, 1065
SfaNI GCATC 1 cut(s) 22
SfuI TTCGAA 1 cut(s) 45
SinI GGWCC 1 cut(s) 1063
SmiMI CAYNNNNRTG 2 cut(s) 603, 1055
SmlI CTYRAG 1 cut(s) 775
SmoI CTYRAG 1 cut(s) 775
SpeI ACTAGT 1 cut(s) 712
Sse9I AATT 6 cut(s) 47, 63, 144, 157, 526, 1086
SspMI CTAG 2 cut(s) 713, 1023
StyD4I CCNGG 1 cut(s) 1033
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 4 cut(s) 10, 39, 380, 818
TaiI ACGT 1 cut(s) 907
TaqI TCGA 4 cut(s) 45, 404, 1001, 1095
TasI AATT 6 cut(s) 47, 63, 144, 157, 526, 1086
TatI WGTACW 3 cut(s) 495, 615, 1090
TfiI GAWTC 6 cut(s) 111, 397, 856, 865, 1007, 1079
Tru1I TTAA 2 cut(s) 143, 1029
Tru9I TTAA 2 cut(s) 143, 1029
TscAI CASTG 1 cut(s) 99
TseFI GTSAC 3 cut(s) 203, 237, 818
Tsp45I GTSAC 3 cut(s) 203, 237, 818
TspDTI ATGAA 7 cut(s) 40, 87, 151, 519, 643, 801, 975
TspRI CASTG 1 cut(s) 99
Van91I CCANNNNNTGG 3 cut(s) 694, 899, 979
VpaK11BI GGWCC 1 cut(s) 1063
VspI ATTAAT 1 cut(s) 143
XapI RAATTY 3 cut(s) 47, 157, 526
XceI RCATGY 2 cut(s) 602, 809
XmiI GTMKAC 1 cut(s) 510
XspI CTAG 2 cut(s) 713, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.