Rroxscaffold_2G00101580

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000234
Physical Location & Seq
Forward (+)
23497605 .. 23499333
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101580.1

Sequence Viewer

Length: 1161 bp
ATGAGAAGAAACAAATGCAAGAAGAGTAGTAGTAGTAGTAGTAATACTATTAGTAGTGTTAGTTATATCCCTGAAGAAATCTTGATCAACATCCTGGCAAGATTACCTGCAAAGTCGCTCCTTCGGTTTAGGTGTGTATCCCAGTCATGGCGTGGTTTGATTGGCAGCCCAAGTTTTGTTAGTAAACATCTTAATAGGAATGTTACAAAACTTTCGCATACCTATCTAATTGCCCTCCAGCGCTTGAGAGATAAGCCAGCACTTTGCCACTCGCTATTTTCTACTGAAACATTTGAGGAGTGTTTGAAGTTGAGACATCCCTTGTGGACTGAGGAACAATTTAGGATATACGGTTCAAGTAATGGGCTGGTTTGTATTTCGGATCAAGTACTGCGGCCGAGTAGTCCTGTATGCATATGGAATCCATGTATTAGGAAATTTAGGACTCTTCCACAATCAATATTTAGACCACATTATTCCAGTTATGATATCTCTCTCTCATTTGGGTTCCACCCTGAGCTTAATGACTACAGAGTGGTAACAATGGCTTGGTATGTTCGATCTATCATTAAAGTGCAGGTCTATAGTCTTAGTACTGGCTCTTGGAAGATGATTGAAGCAATTCCTCCTTGGTTAAAGTTCAATCCGGACTGGTGTCAAGGATGCACATTTTTCAATGGAGTGGCGTATTGGCTTTTTACAAAGTCAAAAAAGTTTAGATTTGTGTCATTTGATACAGATAGTGAAGAATTTGAAGAATTGATGGTACCAGATACTATTTCCACCAAGGGCTTGTCTTATGTTGGAGTCTACAATGGCTCAGTTTGCCTTTTTTATTCCTATCTTGAAGGTCCTGATTGCCAGAAACCACAAAAATATATGGACATATGGGTTCTGAAAGAACAGTCCTTTACCAAGTTGCACACTGCATTTTTACTGCCTGGAAGAGACTATTTGCCATTGGGGTTTAGTATCCAGAATGAACTCATTGCGAAAGACAAAAAGCATACTAAAGGTGATGAAGGAGATACGGGCCAGATGGTTTTATATGATCTCGAAATGAAGCTGATAAAGAAAACAGGGATTAGCTTGGCGCATGATAGTCATTACAAAACTTCAGCAGGTACTTACATTGAAAGTTTGGTTCTACTCGATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

386

Amino Acids

44.46

Weight (kDa)

9.02

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 22 - 58 2.4e-08 F-box-like
F-box PF00646 23 - 60 8e-11 F-box domain
FBA_3 PF08268 109 - 303 1.9e-21 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 113 - 276 7.6e-06 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 119 - 382 6.8e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 115, 568, 1112
Acc65I GGTACC 1 cut(s) 766
AccB1I GGYRCC 1 cut(s) 766
AccI GTMKAC 1 cut(s) 810
AccIII TCCGGA 1 cut(s) 646
AciI CCGC 1 cut(s) 394
AclWI GGATC 1 cut(s) 390
AcoI YGGCCR 1 cut(s) 395
AcsI RAATTY 2 cut(s) 437, 749
AcuI CTGAAG 2 cut(s) 93, 1101
AfaI GTAC 4 cut(s) 390, 595, 768, 1126
AfeI AGCGCT 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 8 cut(s) 307, 357, 617, 643, 676, 755, 848, 1136
AjnI CCWGG 2 cut(s) 93, 940
AloI GAACNNNNNNTCC 2 cut(s) 337, 369
AluBI AGCT 3 cut(s) 520, 1066, 1089
AluI AGCT 3 cut(s) 520, 1066, 1089
Alw26I GTCTC 2 cut(s) 307, 942
AlwI GGATC 1 cut(s) 390
Aor13HI TCCGGA 1 cut(s) 646
Aor51HI AGCGCT 1 cut(s) 242
AoxI GGCC 2 cut(s) 395, 1033
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 2 cut(s) 437, 749
Asp700I GAANNNNTTC 1 cut(s) 621
Asp718I GGTACC 1 cut(s) 766
AspLEI GCGC 2 cut(s) 243, 1096
AspS9I GGNCC 2 cut(s) 851, 1033
AsuHPI GGTGA 1 cut(s) 1028
AvaII GGWCC 1 cut(s) 851
BanI GGYRCC 1 cut(s) 766
BbvI GCAGC 1 cut(s) 177
BccI CCATC 2 cut(s) 757, 1033
BciT130I CCWGG 2 cut(s) 95, 942
BciVI GTATCC 2 cut(s) 148, 983
BclI TGATCA 1 cut(s) 84
BcoDI GTCTC 2 cut(s) 307, 942
BfmI CTRYAG 2 cut(s) 529, 583
BfoI RGCGCY 1 cut(s) 244
BfuAI ACCTGC 3 cut(s) 115, 568, 1112
BfuI GTATCC 2 cut(s) 148, 983
BisI GCNGC 2 cut(s) 166, 395
BlsI GCNGC 2 cut(s) 167, 396
BmcAI AGTACT 2 cut(s) 390, 595
Bme1390I CCNGG 2 cut(s) 95, 942
Bme18I GGWCC 1 cut(s) 851
BmgT120I GGNCC 2 cut(s) 851, 1033
BmiI GGNNCC 2 cut(s) 509, 768
BmrFI CCNGG 2 cut(s) 95, 942
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 653
BmuI ACTGGG 1 cut(s) 136
BoxI GACNNNNGTC 1 cut(s) 654
BpmI CTGGAG 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 265
BsaBI GATNNNNATC 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 629, 786
BsaWI WCCGGW 1 cut(s) 646
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse1I ACTGG 4 cut(s) 142, 480, 601, 656
Bse3DI GCAATG 1 cut(s) 987
Bse8I GATNNNNATC 1 cut(s) 89
BseAI TCCGGA 1 cut(s) 646
BseBI CCWGG 2 cut(s) 95, 942
BseDI CCNNGG 2 cut(s) 629, 786
BseGI GGATG 3 cut(s) 90, 316, 668
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 987
BseMII CTCAG 3 cut(s) 321, 507, 834
BseNI ACTGG 4 cut(s) 142, 480, 601, 656
BseRI GAGGAG 1 cut(s) 311
BseX3I CGGCCG 1 cut(s) 395
BseXI GCAGC 1 cut(s) 177
BsgI GTGCAG 1 cut(s) 596
Bsh1285I CGRYCG 1 cut(s) 398
BshFI GGCC 2 cut(s) 397, 1035
BshNI GGYRCC 1 cut(s) 766
BsiEI CGRYCG 1 cut(s) 398
BsiSI CCGG 1 cut(s) 647
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 2 cut(s) 307, 942
BsnI GGCC 2 cut(s) 397, 1035
Bsp13I TCCGGA 1 cut(s) 646
Bsp143I GATC 5 cut(s) 84, 382, 560, 1051, 1153
BspACI CCGC 1 cut(s) 394
BspANI GGCC 2 cut(s) 397, 1035
BspCNI CTCAG 3 cut(s) 322, 508, 833
BspEI TCCGGA 1 cut(s) 646
BspLI GGNNCC 2 cut(s) 509, 768
BspMI ACCTGC 3 cut(s) 115, 568, 1112
BspPI GGATC 1 cut(s) 390
BspT107I GGYRCC 1 cut(s) 766
BsrDI GCAATG 1 cut(s) 987
BsrI ACTGG 4 cut(s) 142, 480, 601, 656
BssECI CCNNGG 2 cut(s) 629, 786
BssMI GATC 5 cut(s) 84, 382, 560, 1051, 1153
BssT1I CCWWGG 2 cut(s) 629, 786
Bst2UI CCWGG 2 cut(s) 95, 942
Bst4CI ACNGT 2 cut(s) 353, 906
Bst6I CTCTTC 3 cut(s) 17, 453, 940
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 4 cut(s) 330, 516, 590, 820
BstF5I GGATG 3 cut(s) 90, 316, 668
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 2 cut(s) 243, 1096
BstKTI GATC 5 cut(s) 87, 385, 563, 1054, 1156
BstMAI GTCTC 2 cut(s) 307, 942
BstMBI GATC 5 cut(s) 84, 382, 560, 1051, 1153
BstMCI CGRYCG 1 cut(s) 398
BstMWI GCNNNNNNNGC 1 cut(s) 825
BstNI CCWGG 2 cut(s) 95, 942
BstPAI GACNNNNGTC 1 cut(s) 654
BstSCI CCNGG 2 cut(s) 93, 940
BstSFI CTRYAG 2 cut(s) 529, 583
BstV1I GCAGC 1 cut(s) 177
BstZI CGGCCG 1 cut(s) 395
BsuI GTATCC 2 cut(s) 148, 983
BsuRI GGCC 2 cut(s) 397, 1035
BtsCI GGATG 3 cut(s) 90, 316, 668
BtsI GCAGTG 1 cut(s) 924
BtsIMutI CAGTG 1 cut(s) 924
BveI ACCTGC 3 cut(s) 115, 568, 1112
Cac8I GCNNGC 1 cut(s) 258
CfoI GCGC 2 cut(s) 243, 1096
Cfr13I GGNCC 2 cut(s) 851, 1033
Csp6I GTAC 4 cut(s) 389, 594, 767, 1125
CviAII CATG 3 cut(s) 147, 426, 1097
CviQI GTAC 4 cut(s) 389, 594, 767, 1125
DdeI CTNAG 4 cut(s) 330, 516, 590, 820
DpnI GATC 5 cut(s) 86, 384, 562, 1053, 1155
DpnII GATC 5 cut(s) 84, 382, 560, 1051, 1153
EaeI YGGCCR 1 cut(s) 395
EagI CGGCCG 1 cut(s) 395
Eam1104I CTCTTC 3 cut(s) 17, 453, 940
EarI CTCTTC 3 cut(s) 17, 453, 940
EclXI CGGCCG 1 cut(s) 395
Eco130I CCWWGG 2 cut(s) 629, 786
Eco32I GATATC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 851
Eco47III AGCGCT 1 cut(s) 242
Eco52I CGGCCG 1 cut(s) 395
Eco57I CTGAAG 2 cut(s) 93, 1101
EcoO109I RGGNCCY 1 cut(s) 851
EcoRII CCWGG 2 cut(s) 93, 940
EcoRV GATATC 1 cut(s) 490
EcoT14I CCWWGG 2 cut(s) 629, 786
EcoT22I ATGCAT 1 cut(s) 416
ErhI CCWWGG 2 cut(s) 629, 786
FaeI CATG 3 cut(s) 150, 429, 1100
FatI CATG 3 cut(s) 146, 425, 1096
FauNDI CATATG 2 cut(s) 416, 887
FbaI TGATCA 1 cut(s) 84
FblI GTMKAC 1 cut(s) 810
Fnu4HI GCNGC 2 cut(s) 166, 395
FokI GGATG 3 cut(s) 77, 303, 675
Fsp4HI GCNGC 2 cut(s) 166, 395
GlaI GCGC 2 cut(s) 242, 1095
GluI GCNGC 2 cut(s) 166, 395
GsuI CTGGAG 1 cut(s) 221
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 2 cut(s) 397, 1035
HapII CCGG 1 cut(s) 647
HhaI GCGC 2 cut(s) 243, 1096
Hin1II CATG 3 cut(s) 150, 429, 1100
Hin6I GCGC 2 cut(s) 241, 1094
HinP1I GCGC 2 cut(s) 241, 1094
HinfI GANTC 3 cut(s) 421, 445, 807
HpaII CCGG 1 cut(s) 647
HphI GGTGA 1 cut(s) 1028
Hpy166II GTNNAC 3 cut(s) 185, 327, 811
Hpy188I TCNGA 2 cut(s) 382, 897
Hpy188III TCNNGA 6 cut(s) 82, 647, 845, 854, 976, 1055
Hpy8I GTNNAC 3 cut(s) 185, 327, 811
HpyAV CCTTC 3 cut(s) 131, 842, 1016
HpyCH4III ACNGT 2 cut(s) 353, 906
HpyCH4V TGCA 7 cut(s) 18, 110, 414, 577, 666, 922, 929
HpyF10VI GCNNNNNNNGC 1 cut(s) 825
HpyF3I CTNAG 4 cut(s) 330, 516, 590, 820
Hsp92II CATG 3 cut(s) 150, 429, 1100
HspAI GCGC 2 cut(s) 241, 1094
Kpn2I TCCGGA 1 cut(s) 646
KpnI GGTACC 1 cut(s) 770
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 5 cut(s) 84, 382, 560, 1051, 1153
LmnI GCTCC 1 cut(s) 123
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 653
MaeIII GTNAC 2 cut(s) 202, 538
MalI GATC 5 cut(s) 86, 384, 562, 1053, 1155
MboI GATC 5 cut(s) 84, 382, 560, 1051, 1153
MboII GAAGA 8 cut(s) 18, 34, 86, 440, 619, 758, 767, 957
MluCI AATT 6 cut(s) 228, 338, 437, 621, 749, 758
MlyI GAGTC 2 cut(s) 439, 816
MmeI TCCRAC 1 cut(s) 784
MnlI CCTC 4 cut(s) 245, 289, 325, 636
Mph1103I ATGCAT 1 cut(s) 416
MroI TCCGGA 1 cut(s) 646
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 4 cut(s) 192, 522, 570, 635
MslI CAYNNNNRTG 1 cut(s) 572
MspI CCGG 1 cut(s) 647
MspR9I CCNGG 2 cut(s) 95, 942
MvaI CCWGG 2 cut(s) 95, 942
MwoI GCNNNNNNNGC 1 cut(s) 825
NdeI CATATG 2 cut(s) 416, 887
NdeII GATC 5 cut(s) 84, 382, 560, 1051, 1153
NlaIII CATG 3 cut(s) 150, 429, 1100
NlaIV GGNNCC 2 cut(s) 509, 768
NmeAIII GCCGAG 1 cut(s) 423
NsiI ATGCAT 1 cut(s) 416
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 1 cut(s) 421
PkrI GCNGC 2 cut(s) 167, 396
PleI GAGTC 2 cut(s) 439, 815
PpsI GAGTC 2 cut(s) 439, 815
PpuMI RGGWCCY 1 cut(s) 851
PshAI GACNNNNGTC 1 cut(s) 654
Psp5II RGGWCCY 1 cut(s) 851
Psp6I CCWGG 2 cut(s) 93, 940
PspGI CCWGG 2 cut(s) 93, 940
PspN4I GGNNCC 2 cut(s) 509, 768
PspPI GGNCC 2 cut(s) 851, 1033
PspPPI RGGWCCY 1 cut(s) 851
RsaI GTAC 4 cut(s) 390, 595, 768, 1126
RsaNI GTAC 4 cut(s) 389, 594, 767, 1125
RseI CAYNNNNRTG 1 cut(s) 572
SaqAI TTAA 4 cut(s) 192, 522, 570, 635
SatI GCNGC 2 cut(s) 166, 395
Sau3AI GATC 5 cut(s) 84, 382, 560, 1051, 1153
Sau96I GGNCC 2 cut(s) 851, 1033
ScaI AGTACT 2 cut(s) 390, 595
SchI GAGTC 2 cut(s) 439, 816
ScrFI CCNGG 2 cut(s) 95, 942
SfaNI GCATC 1 cut(s) 653
SfcI CTRYAG 2 cut(s) 529, 583
SinI GGWCC 1 cut(s) 851
SmiMI CAYNNNNRTG 1 cut(s) 572
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 6 cut(s) 228, 338, 437, 621, 749, 758
SsiI CCGC 1 cut(s) 394
SspI AATATT 1 cut(s) 462
StyD4I CCNGG 2 cut(s) 93, 940
StyI CCWWGG 2 cut(s) 629, 786
TaaI ACNGT 2 cut(s) 353, 906
TaqI TCGA 3 cut(s) 559, 1056, 1152
TasI AATT 6 cut(s) 228, 338, 437, 621, 749, 758
TatI WGTACW 2 cut(s) 388, 593
TauI GCSGC 1 cut(s) 397
TfiI GAWTC 1 cut(s) 421
Tru1I TTAA 4 cut(s) 192, 522, 570, 635
Tru9I TTAA 4 cut(s) 192, 522, 570, 635
TscAI CASTG 1 cut(s) 931
TseI GCWGC 1 cut(s) 165
TspDTI ATGAA 3 cut(s) 996, 1035, 1076
TspRI CASTG 1 cut(s) 931
VpaK11BI GGWCC 1 cut(s) 851
XapI RAATTY 2 cut(s) 437, 749
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 810
XmnI GAANNNNTTC 1 cut(s) 621
ZrmI AGTACT 2 cut(s) 390, 595
Zsp2I ATGCAT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.