Rh4DG010400

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000234
Physical Location & Seq
Forward (+)
1533584 .. 1533961
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG010400.1

Sequence Viewer

Length: 378 bp
ATGAGCAGTGACATTTTTCGAAAAATTGTACTTCCTAATGAATTGGTGAATCCGTATCCAAATCTGGATACGATTCATATTCGGGTGCTTGAGAATGCACTTTCTGTGTTCCACTTGGATTGGAAATCTTTCTCCGCTGACATATGGGTTCTGGAAAAGGATAATACTTGGAAAAATGTTCGCACTATTCGGCAGCCATCAAAGGATTACATAGCTTGGCCTCTGGGCTTTAATAAAAATGGTGAAGTTCATATTACAAGAAGAAACTCTTGTTTGGTTTTATACGATACTAAATCGCGTCCTGTTAAGGAGATTGAGATACCTCATATAGCCAGGTACATCGATGCCTATAGAGAGAGTTTAATTTTACTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

125

Amino Acids

14.77

Weight (kDa)

8.74

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 298
AciI CCGC 1 cut(s) 135
AfaI GTAC 2 cut(s) 30, 338
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 193
Asp700I GAANNNNTTC 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 58, 254
AsuII TTCGAA 1 cut(s) 19
BbvI GCAGC 1 cut(s) 205
BccI CCATC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 334
BciVI GTATCC 2 cut(s) 61, 66
BfmI CTRYAG 1 cut(s) 349
BfuI GTATCC 2 cut(s) 61, 66
BisI GCNGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 334
BmsI GCATC 1 cut(s) 334
Bpu14I TTCGAA 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 110
Bsa29I ATCGAT 1 cut(s) 342
BseBI CCWGG 1 cut(s) 334
BseCI ATCGAT 1 cut(s) 342
BseXI GCAGC 1 cut(s) 205
Bsh1236I CGCG 1 cut(s) 298
BshFI GGCC 1 cut(s) 220
BshVI ATCGAT 1 cut(s) 342
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 1 cut(s) 220
Bsp119I TTCGAA 1 cut(s) 19
BspACI CCGC 1 cut(s) 135
BspANI GGCC 1 cut(s) 220
BspDI ATCGAT 1 cut(s) 342
BspFNI CGCG 1 cut(s) 298
BspT104I TTCGAA 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 334
BstBI TTCGAA 1 cut(s) 19
BstFNI CGCG 1 cut(s) 298
BstNI CCWGG 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 332
BstSFI CTRYAG 1 cut(s) 349
BstUI CGCG 1 cut(s) 298
BstV1I GCAGC 1 cut(s) 205
Bsu15I ATCGAT 1 cut(s) 342
BsuI GTATCC 2 cut(s) 61, 66
BsuRI GGCC 1 cut(s) 220
BsuTUI ATCGAT 1 cut(s) 342
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 13
ClaI ATCGAT 1 cut(s) 342
CseI GACGC 1 cut(s) 287
Csp6I GTAC 2 cut(s) 29, 337
CspCI CAANNNNNGTGG 2 cut(s) 101, 136
CviJI RGCY 5 cut(s) 196, 215, 220, 228, 332
CviKI_1 RGCY 5 cut(s) 196, 215, 220, 228, 332
CviQI GTAC 2 cut(s) 29, 337
EcoRII CCWGG 1 cut(s) 332
FaiI YATR 9 cut(s) 78, 143, 145, 212, 252, 283, 327, 329, 351
FalI AAGNNNNNCTT 2 cut(s) 253, 285
FauNDI CATATG 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 194
GluI GCNGC 1 cut(s) 194
HaeIII GGCC 1 cut(s) 220
HgaI GACGC 1 cut(s) 287
HinfI GANTC 2 cut(s) 49, 73
HphI GGTGA 2 cut(s) 58, 254
Hpy188III TCNNGA 2 cut(s) 65, 152
HpyCH4V TGCA 1 cut(s) 98
LpnPI CCDG 6 cut(s) 50, 137, 209, 315, 319, 346
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 1 cut(s) 334
MaeIII GTNAC 1 cut(s) 8
MboII GAAGA 1 cut(s) 273
MluCI AATT 3 cut(s) 24, 41, 363
MnlI CCTC 2 cut(s) 231, 333
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 3 cut(s) 231, 306, 362
MspA1I CMGCKG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 334
Mva1269I GAATGC 1 cut(s) 100
MvaI CCWGG 1 cut(s) 334
MvnI CGCG 1 cut(s) 298
NdeI CATATG 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 8
NspV TTCGAA 1 cut(s) 19
PctI GAATGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 49, 73
PkrI GCNGC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
RsaI GTAC 2 cut(s) 30, 338
RsaNI GTAC 2 cut(s) 29, 337
SaqAI TTAA 3 cut(s) 231, 306, 362
SatI GCNGC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 334
SetI ASST 3 cut(s) 217, 325, 338
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 349
SfuI TTCGAA 1 cut(s) 19
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 3 cut(s) 24, 41, 363
SsiI CCGC 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 332
TaqI TCGA 2 cut(s) 19, 342
TasI AATT 3 cut(s) 24, 41, 363
TatI WGTACW 1 cut(s) 28
TfiI GAWTC 2 cut(s) 49, 73
Tru1I TTAA 3 cut(s) 231, 306, 362
Tru9I TTAA 3 cut(s) 231, 306, 362
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 3 cut(s) 54, 65, 239
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 1 cut(s) 13
XmnI GAANNNNTTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.