Rh2AG180200

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000234
Physical Location & Seq
Reverse (-)
17278831 .. 17279178
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG180200.1

Sequence Viewer

Length: 348 bp
ATGAAAAAAAGTAGTGCGAATTATGAGTATCTACTTATCCGCACTGACCAGAGAGAGTGCTTGTCCCTCTTTTGTGCTGAGACATACACCAAGTGCTTGGATTTAGAGTTTCCCGAGCACGAACTCGGTCCAACCTTCTATGTCCATGGTTCATGTAATGGAGTGCTTTGCATCTCTAATAAACCATTAACTGTTACTTTAAGTAGTCCTCGCATATATCTATGGAATCCATCCATCAGAAGATTCACGGAACTACCTAAAGGCCTCCTCCGTGAGTATGACTACGGAGGATTCCCGGAATATAGTACTTTTCTTGGATTTGGATTCCGAACGATTATAAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

115

Amino Acids

13.32

Weight (kDa)

7.61

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AciI CCGC 1 cut(s) 40
AdeI CACNNNGTG 1 cut(s) 93
AfaI GTAC 1 cut(s) 307
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 296
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 120
BccI CCATC 2 cut(s) 238, 242
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 74
BmcAI AGTACT 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 257
BshFI GGCC 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 1 cut(s) 264
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 120
Bsp19I CCATGG 1 cut(s) 145
BspACI CCGC 1 cut(s) 40
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 145
BstF5I GGATG 1 cut(s) 230
BstMAI GTCTC 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 294
BstXI CCANNNNNNTGG 1 cut(s) 97
BsuRI GGCC 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 306
CviAII CATG 2 cut(s) 146, 153
CviJI RGCY 1 cut(s) 264
CviKI_1 RGCY 1 cut(s) 264
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 1 cut(s) 78
DraIII CACNNNGTG 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 145
Eco147I AGGCCT 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 2 cut(s) 149, 156
FaqI GGGAC 1 cut(s) 49
FatI CATG 2 cut(s) 145, 152
FokI GGATG 1 cut(s) 217
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 296
Hin1II CATG 2 cut(s) 149, 156
HinfI GANTC 4 cut(s) 226, 243, 291, 324
HpaII CCGG 1 cut(s) 296
Hpy188I TCNGA 2 cut(s) 239, 329
Hpy188III TCNNGA 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 171
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 2 cut(s) 149, 156
LpnPI CCDG 2 cut(s) 62, 309
LweI GCATC 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 193
MboII GAAGA 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 2 cut(s) 19, 341
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 5 cut(s) 77, 219, 275, 278, 281
MseI TTAA 2 cut(s) 188, 200
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 1 cut(s) 296
NciI CCSGG 1 cut(s) 296
NcoI CCATGG 1 cut(s) 145
NlaIII CATG 2 cut(s) 149, 156
PceI AGGCCT 1 cut(s) 264
PfeI GAWTC 4 cut(s) 226, 243, 291, 324
PfoI TCCNGGA 1 cut(s) 294
PsiI TTATAA 1 cut(s) 338
PspPI GGNCC 1 cut(s) 128
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SaqAI TTAA 2 cut(s) 188, 200
Sau96I GGNCC 1 cut(s) 128
ScaI AGTACT 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 1 cut(s) 120
SetI ASST 2 cut(s) 137, 259
SfaNI GCATC 1 cut(s) 180
SinI GGWCC 1 cut(s) 128
Sse9I AATT 2 cut(s) 19, 341
SseBI AGGCCT 1 cut(s) 264
SsiI CCGC 1 cut(s) 40
StuI AGGCCT 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 193
TaqII GACCGA 1 cut(s) 116
TasI AATT 2 cut(s) 19, 341
TatI WGTACW 1 cut(s) 305
TfiI GAWTC 4 cut(s) 226, 243, 291, 324
Tru1I TTAA 2 cut(s) 188, 200
Tru9I TTAA 2 cut(s) 188, 200
TscAI CASTG 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 17, 141
TspGWI ACGGA 3 cut(s) 260, 263, 300
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 128
ZrmI AGTACT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.