Rh6CG458300

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
63353832 .. 63354335
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG458300.1

Sequence Viewer

Length: 504 bp
ATGTCTACCATCGAAGACCTACCTGCAGAAATATTGTTTGATATCTTTGCAAGATTACCTGTGAAATCTGCTTTCCTGCTAAGATGGGTTTGCAAATCTTTCAAGACTTTAATTACAAGTTCTGATTTCATACACTTCCATCTCGAAAGGAATCCCATGAAAAATTCTTCCGATTATCTACTCGTCCGCAGTACGGAGATTGATTGCATGTCACGCATTTGTGCTAGAACATTTGCTAGGGATTTGGATATAAAGCTTCCTGAGAATGCTGTGTACGAGTTGGGTTCTGAATTAACTGTTTATGGTTCATACAATGGGTTGCTTTGCATATCCAACAGGCATCTGTGTGTAGATAAACCTATATACTTGTGGAATCCATCAATTAGAAAAATCAGAAGACTTCCCTATATGGCCTCATCACAAGCACCATTAATGACCACTATTATCAAGTTACTCTTGGGATGGGATTCCATTCTGCAGGTGGGAATGACTATAAGGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

167

Amino Acids

19.23

Weight (kDa)

8.85

Isoelectric Point (pI)

55.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 44 3.8e-08 F-box domain
F-box-like PF12937 4 - 41 9.5e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 502
AarI CACCTGC 1 cut(s) 469
Acc36I ACCTGC 2 cut(s) 31, 469
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 2 cut(s) 193, 275
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 1 cut(s) 103
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
AoxI GGCC 1 cut(s) 411
ApoI RAATTY 1 cut(s) 163
AseI ATTAAT 1 cut(s) 431
BbsI GAAGAC 2 cut(s) 21, 403
BccI CCATC 5 cut(s) 17, 78, 147, 385, 456
BfaI CTAG 2 cut(s) 225, 237
BfmI CTRYAG 2 cut(s) 24, 476
BfuAI ACCTGC 2 cut(s) 31, 469
BmsI GCATC 1 cut(s) 349
BpiI GAAGAC 2 cut(s) 21, 403
Bsc4I CCNNNNNNNGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 467
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 252
BshFI GGCC 1 cut(s) 413
BslI CCNNNNNNNGG 1 cut(s) 193
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 1 cut(s) 413
BspACI CCGC 1 cut(s) 187
BspANI GGCC 1 cut(s) 413
BspCNI CTCAG 1 cut(s) 253
BspMAI CTGCAG 2 cut(s) 28, 480
BspMI ACCTGC 2 cut(s) 31, 469
Bst4CI ACNGT 1 cut(s) 298
BstDEI CTNAG 2 cut(s) 80, 261
BstF5I GGATG 1 cut(s) 467
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstNSI RCATGY 1 cut(s) 211
BstSFI CTRYAG 2 cut(s) 24, 476
BstV2I GAAGAC 2 cut(s) 21, 403
BsuRI GGCC 1 cut(s) 413
BtsCI GGATG 1 cut(s) 467
BveI ACCTGC 2 cut(s) 31, 469
Csp6I GTAC 2 cut(s) 192, 274
CviAII CATG 2 cut(s) 157, 208
CviJI RGCY 2 cut(s) 256, 413
CviKI_1 RGCY 2 cut(s) 256, 413
CviQI GTAC 2 cut(s) 192, 274
DdeI CTNAG 2 cut(s) 80, 261
Eco32I GATATC 1 cut(s) 43
EcoRV GATATC 1 cut(s) 43
FaeI CATG 2 cut(s) 160, 211
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FatI CATG 2 cut(s) 156, 207
FblI GTMKAC 1 cut(s) 5
FokI GGATG 1 cut(s) 474
FspBI CTAG 2 cut(s) 225, 237
HaeIII GGCC 1 cut(s) 413
Hin1II CATG 2 cut(s) 160, 211
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 3 cut(s) 151, 373, 467
Hpy166II GTNNAC 2 cut(s) 6, 274
Hpy188I TCNGA 4 cut(s) 124, 172, 289, 395
Hpy188III TCNNGA 3 cut(s) 103, 143, 260
Hpy8I GTNNAC 2 cut(s) 6, 274
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 6 cut(s) 26, 50, 93, 207, 327, 478
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 2 cut(s) 80, 261
Hsp92II CATG 2 cut(s) 160, 211
LpnPI CCDG 6 cut(s) 36, 72, 89, 273, 322, 464
LweI GCATC 1 cut(s) 349
MaeI CTAG 2 cut(s) 225, 237
MaeIII GTNAC 2 cut(s) 210, 450
MboII GAAGA 3 cut(s) 26, 159, 408
MluCI AATT 4 cut(s) 111, 163, 290, 381
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 1 cut(s) 424
MseI TTAA 3 cut(s) 110, 293, 431
MslI CAYNNNNRTG 1 cut(s) 345
Mva1269I GAATGC 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 213
NlaIII CATG 2 cut(s) 160, 211
NmuCI GTSAC 1 cut(s) 210
NspI RCATGY 1 cut(s) 211
PaqCI CACCTGC 1 cut(s) 469
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 3 cut(s) 151, 373, 467
PshBI ATTAAT 1 cut(s) 431
PsiI TTATAA 1 cut(s) 502
PstI CTGCAG 2 cut(s) 28, 480
RsaI GTAC 2 cut(s) 193, 275
RsaNI GTAC 2 cut(s) 192, 274
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 3 cut(s) 110, 293, 431
SetI ASST 7 cut(s) 21, 25, 61, 258, 361, 483, 500
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 2 cut(s) 24, 476
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 4 cut(s) 111, 163, 290, 381
SsiI CCGC 1 cut(s) 187
SspI AATATT 1 cut(s) 33
SspMI CTAG 2 cut(s) 225, 237
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 12, 144
TasI AATT 4 cut(s) 111, 163, 290, 381
TfiI GAWTC 3 cut(s) 151, 373, 467
Tru1I TTAA 3 cut(s) 110, 293, 431
Tru9I TTAA 3 cut(s) 110, 293, 431
TseFI GTSAC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 210
TspDTI ATGAA 3 cut(s) 118, 173, 297
TspGWI ACGGA 1 cut(s) 209
VspI ATTAAT 1 cut(s) 431
XapI RAATTY 1 cut(s) 163
XceI RCATGY 1 cut(s) 211
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 225, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.