pycom09g18870

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
19656868 .. 19657290
423 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g18870.1

Sequence Viewer

Length: 423 bp
ATGTCTACCCGTAAGAATGTAAAAGGGCATAGAAGAGATGCTCAACCTTTGTTGATGAGATCCAGTTTAACGGAAGAAATCTTGTTTGACATCCTTGCAAGATTACCCGTGAAATCTCTTTTGCGGTTCAGATGCGTTTACAGATCTTGGAACAATTTAATTATTAGCCCTAGTTTCATAAAAGCCCATCTTAAAACGAATGTCGTGCAAAATTCTTGTGATCATCTACTCATCCACACTGATATGAGCAATTGCTTGTCACTCTTTGATGCTGAAACATTTTCCAAGCGTTTGGATTTAGAGCTTCCTGGTCATGATTTTGGTTTCGTCGTTCACGGTTCGTGCAATGGATTGGTTTGCATCTCTAATTCTGCATTTATGACCTTGGAGAGTCCGGTATATCTATGGAACCCATCAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

141

Amino Acids

15.95

Weight (kDa)

8.69

Isoelectric Point (pI)

60.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 21 - 60 1.9e-09 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 124
AclWI GGATC 1 cut(s) 54
AcsI RAATTY 1 cut(s) 211
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
AlwI GGATC 1 cut(s) 54
ApoI RAATTY 1 cut(s) 211
BccI CCATC 2 cut(s) 195, 421
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BciT130I CCWGG 1 cut(s) 309
BclI TGATCA 1 cut(s) 220
BfaI CTAG 1 cut(s) 171
BglII AGATCT 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 309
BmiI GGNNCC 1 cut(s) 410
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 4 cut(s) 28, 122, 259, 369
BsaJI CCNNGG 1 cut(s) 384
BsaWI WCCGGW 1 cut(s) 394
Bse1I ACTGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 352
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 384
BseGI GGATG 2 cut(s) 90, 231
BseMI GCAATG 1 cut(s) 352
BseNI ACTGG 1 cut(s) 63
BsiSI CCGG 1 cut(s) 395
Bsp143I GATC 3 cut(s) 59, 143, 220
BspACI CCGC 1 cut(s) 124
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 410
BspPI GGATC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 352
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 3 cut(s) 59, 143, 220
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 338
Bst6I CTCTTC 1 cut(s) 28
BstF5I GGATG 2 cut(s) 90, 231
BstKTI GATC 3 cut(s) 62, 146, 223
BstMBI GATC 3 cut(s) 59, 143, 220
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstX2I RGATCY 2 cut(s) 59, 143
BstXI CCANNNNNNTGG 1 cut(s) 292
BstYI RGATCY 2 cut(s) 59, 143
BtsCI GGATG 2 cut(s) 90, 231
BtsIMutI CAGTG 1 cut(s) 237
CciI TCATGA 1 cut(s) 313
CviAII CATG 1 cut(s) 314
CviJI RGCY 3 cut(s) 168, 185, 304
CviKI_1 RGCY 3 cut(s) 168, 185, 304
DpnI GATC 3 cut(s) 61, 145, 222
DpnII GATC 3 cut(s) 59, 143, 220
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 1 cut(s) 317
FaiI YATR 8 cut(s) 30, 179, 245, 315, 380, 400, 406, 421
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FatI CATG 1 cut(s) 313
FbaI TGATCA 1 cut(s) 220
FblI GTMKAC 1 cut(s) 5
FokI GGATG 2 cut(s) 77, 218
FspBI CTAG 1 cut(s) 171
HapII CCGG 1 cut(s) 395
Hin1II CATG 1 cut(s) 317
HinfI GANTC 1 cut(s) 391
HpaII CCGG 1 cut(s) 395
Hpy166II GTNNAC 3 cut(s) 6, 139, 334
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 3 cut(s) 6, 139, 334
Hpy99I CGWCG 1 cut(s) 332
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4V TGCA 5 cut(s) 98, 208, 345, 360, 374
Hsp92II CATG 1 cut(s) 317
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 3 cut(s) 59, 143, 220
LpnPI CCDG 4 cut(s) 76, 294, 321, 408
LweI GCATC 4 cut(s) 28, 122, 259, 369
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 258
MalI GATC 3 cut(s) 61, 145, 222
MboI GATC 3 cut(s) 59, 143, 220
MboII GAAGA 2 cut(s) 45, 86
MfeI CAATTG 1 cut(s) 250
MflI RGATCY 2 cut(s) 59, 143
MluCI AATT 5 cut(s) 154, 159, 211, 250, 367
MlyI GAGTC 1 cut(s) 400
MseI TTAA 3 cut(s) 68, 158, 192
MslI CAYNNNNRTG 1 cut(s) 242
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 309
MunI CAATTG 1 cut(s) 250
MvaI CCWGG 1 cut(s) 309
NdeII GATC 3 cut(s) 59, 143, 220
NlaIII CATG 1 cut(s) 317
NlaIV GGNNCC 1 cut(s) 410
NmuCI GTSAC 1 cut(s) 258
PagI TCATGA 1 cut(s) 313
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 410
PsuI RGATCY 2 cut(s) 59, 143
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 3 cut(s) 68, 158, 192
Sau3AI GATC 3 cut(s) 59, 143, 220
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 1 cut(s) 309
SetI ASST 3 cut(s) 49, 306, 386
SfaNI GCATC 4 cut(s) 28, 122, 259, 369
SmiMI CAYNNNNRTG 1 cut(s) 242
Sse9I AATT 5 cut(s) 154, 159, 211, 250, 367
SsiI CCGC 1 cut(s) 124
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 1 cut(s) 338
TasI AATT 5 cut(s) 154, 159, 211, 250, 367
Tru1I TTAA 3 cut(s) 68, 158, 192
Tru9I TTAA 3 cut(s) 68, 158, 192
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 258
Tsp45I GTSAC 1 cut(s) 258
TspDTI ATGAA 1 cut(s) 166
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 244
XapI RAATTY 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.