Prupe.3G047400_v2.0.a1

F-box protein CPR30-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000234
Physical Location & Seq
Forward (+)
3365323 .. 3366756
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G047400.1

Sequence Viewer

Length: 1083 bp
ATGGAGGCATTTATAAAGAAGTACAAAGATGAGCAAACATCCTTTCTAACCTCTCTCATTTTGATCTATTTAATCAGGATGAGTAACTCAGGCTGCAATGGTTCCCATTACATTCCTGAAGAAATCTTGATCAACATATTATCAAGACTACCGGTAAAATCTCTTATTCGGTTTATTTGTGTATGCAAGTTATGGAGTTCTTTGATTCGAAGCTCGAGGTTTATTGGAATGCATCTTAATAGGAATATTAAGCATCCCTTAACAGGGCCCAAAATTGACATACATGGTTCAAGTAATGGCTTAGTTTGTCTTTCATATGAACTGGGGAATTTGGATACTGCTATATACCTATGCAACCTATCAATTCAGAAACATGTGGTCCTTCCTCCCACCAGCATTCTGTGCTTCCCCTGGCCTGAATATGCCACTGGTGTTGCATTCGGGTTCCACCCCGGGCTTAACGACTACAAGGTGGTAAGGTTGCTCGCATTTTTTGTGGGGAACTGCATTGAAGTGGAGGTTTATAGTTTGAGCACAAACTCTTGGAAGAGGATTGATGCAATTCCTGCTTCCATAAAGACCCTGGTGTTGCACTCTGATCAGTGTGCATTTTTTAATGGAGTAGCATATTGGATTATGCTCAAGGGAAAGGATGCTACTCATTGTTTATTGTCTTTCGATACCGACAGTGAGGTGTTTGAAGAGCTTCTGCTACCAGATGCTGTTGAACCGATGCCATATTATTGCAAGGTATTAATTTCGGAGTACAAGGGATCAATTTGCCTGTTGCTGTCCAATCTAGATTTCAGAGCTAGTAATGACTACATTGACATGTGGGTTCTCCAAGAAAAGTCTTTCAAGAAGTTGCTGACTGTTTACCTTCCTGGAAAGTGGAGCTTTTACCCTCTGGCCATTAGAATGAGCAACGAACTCCTCGGGGGATATCCTCGTGGGAGGTATTTGTATTCTTATAATCTTGAAACTAAGCAGATTACAGAAACTGGAATTAAGTTGGCGGTGGATTGCTATAACAACTATAATGCGCATACTTATGCCGAAAGTTTAGTCTTGCTCAGGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

361

Amino Acids

41.07

Weight (kDa)

7.51

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 14, 972
Acc16I TGCGCA 1 cut(s) 1044
AciI CCGC 1 cut(s) 1016
AclWI GGATC 1 cut(s) 781
AcoI YGGCCR 1 cut(s) 909
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 2 cut(s) 23, 767
AfiI CCNNNNNNNGG 2 cut(s) 263, 264
AflIII ACRYGT 2 cut(s) 373, 831
AgeI ACCGGT 1 cut(s) 151
AgsI TTSAA 6 cut(s) 291, 512, 701, 728, 859, 980
AjnI CCWGG 3 cut(s) 410, 582, 883
AjuI GAANNNNNNNTTGG 2 cut(s) 788, 820
AluBI AGCT 4 cut(s) 213, 706, 812, 897
AluI AGCT 4 cut(s) 213, 706, 812, 897
Alw21I GWGCWC 1 cut(s) 536
AlwI GGATC 1 cut(s) 781
AlwNI CAGNNNCTG 2 cut(s) 722, 1001
Ama87I CYCGRG 3 cut(s) 214, 452, 935
AoxI GGCC 3 cut(s) 266, 413, 909
ApaI GGGCCC 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 93
ApoI RAATTY 1 cut(s) 328
ArsI GACNNNNNNTTYG 2 cut(s) 1050, 1082
AseI ATTAAT 1 cut(s) 755
AsiGI ACCGGT 1 cut(s) 151
Asp700I GAANNNNTTC 1 cut(s) 705
AspLEI GCGC 1 cut(s) 1045
AspS9I GGNCC 3 cut(s) 266, 267, 379
AsuC2I CCSGG 2 cut(s) 453, 454
AsuII TTCGAA 1 cut(s) 208
AvaI CYCGRG 3 cut(s) 214, 452, 935
AvaII GGWCC 1 cut(s) 379
BaeGI GKGCMC 1 cut(s) 270
BalI TGGCCA 1 cut(s) 911
BanII GRGCYC 1 cut(s) 270
BauI CACGAG 1 cut(s) 948
Bbv12I GWGCWC 1 cut(s) 536
BbvI GCAGC 1 cut(s) 80
BciT130I CCWGG 3 cut(s) 412, 584, 885
BciVI GTATCC 1 cut(s) 328
BclI TGATCA 2 cut(s) 129, 598
BcnI CCSGG 2 cut(s) 453, 454
BfaI CTAG 2 cut(s) 800, 813
BfuI GTATCC 1 cut(s) 328
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
Bme1390I CCNGG 5 cut(s) 412, 453, 454, 584, 885
Bme18I GGWCC 1 cut(s) 379
BmeT110I CYCGRG 3 cut(s) 214, 452, 935
BmgT120I GGNCC 3 cut(s) 266, 267, 379
BmiI GGNNCC 3 cut(s) 103, 268, 446
BmrFI CCNGG 5 cut(s) 412, 453, 454, 584, 885
BmrI ACTGGG 1 cut(s) 332
BmsI GCATC 6 cut(s) 241, 262, 547, 643, 709, 723
BmuI ACTGGG 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 1073
Bpu14I TTCGAA 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 626
BpuMI CCSGG 2 cut(s) 453, 454
BsaJI CCNNGG 5 cut(s) 410, 451, 452, 582, 934
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 264
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 3 cut(s) 327, 433, 1006
Bse3DI GCAATG 1 cut(s) 103
BseBI CCWGG 3 cut(s) 412, 584, 885
BseDI CCNNGG 5 cut(s) 410, 451, 452, 582, 934
BseGI GGATG 4 cut(s) 38, 84, 253, 658
BseLI CCNNNNNNNGG 2 cut(s) 263, 264
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 3 cut(s) 327, 433, 1006
BseRI GAGGAG 1 cut(s) 923
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 3 cut(s) 268, 415, 911
BshTI ACCGGT 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 536
BsiHKCI CYCGRG 3 cut(s) 214, 452, 935
BsiSI CCGG 2 cut(s) 152, 453
BslI CCNNNNNNNGG 2 cut(s) 263, 264
BsmI GAATGC 3 cut(s) 234, 396, 437
BsnI GGCC 3 cut(s) 268, 415, 911
BsoBI CYCGRG 3 cut(s) 214, 452, 935
Bsp119I TTCGAA 1 cut(s) 208
Bsp120I GGGCCC 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 270, 536
Bsp143I GATC 4 cut(s) 63, 129, 598, 773
BspACI CCGC 1 cut(s) 1016
BspANI GGCC 3 cut(s) 268, 415, 911
BspCNI CTCAG 1 cut(s) 101
BspLI GGNNCC 3 cut(s) 103, 268, 446
BspPI GGATC 1 cut(s) 781
BspQI GCTCTTC 1 cut(s) 696
BspT104I TTCGAA 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 3 cut(s) 327, 433, 1006
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 5 cut(s) 410, 451, 452, 582, 934
BssMI GATC 4 cut(s) 63, 129, 598, 773
BssSI CACGAG 1 cut(s) 948
Bst2BI CACGAG 1 cut(s) 948
Bst2UI CCWGG 3 cut(s) 412, 584, 885
Bst4CI ACNGT 2 cut(s) 689, 874
Bst6I CTCTTC 2 cut(s) 542, 696
BstAPI GCANNNNNTGC 2 cut(s) 402, 566
BstBI TTCGAA 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 4 cut(s) 88, 301, 984, 1073
BstF5I GGATG 4 cut(s) 38, 84, 253, 658
BstHHI GCGC 1 cut(s) 1045
BstKTI GATC 4 cut(s) 66, 132, 601, 776
BstMBI GATC 4 cut(s) 63, 129, 598, 773
BstMWI GCNNNNNNNGC 2 cut(s) 402, 566
BstNI CCWGG 3 cut(s) 412, 584, 885
BstNSI RCATGY 2 cut(s) 377, 835
BstSCI CCNGG 5 cut(s) 410, 451, 452, 582, 883
BstSLI GKGCMC 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 80
BsuI GTATCC 1 cut(s) 328
BsuRI GGCC 3 cut(s) 268, 415, 911
BtsCI GGATG 4 cut(s) 38, 84, 253, 658
BtsIMutI CAGTG 3 cut(s) 426, 608, 694
Cac8I GCNNGC 1 cut(s) 486
CaiI CAGNNNCTG 2 cut(s) 722, 1001
CfoI GCGC 1 cut(s) 1045
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 3 cut(s) 266, 267, 379
Cfr9I CCCGGG 1 cut(s) 452
Csp6I GTAC 2 cut(s) 22, 766
CspAI ACCGGT 1 cut(s) 151
CspCI CAANNNNNGTGG 2 cut(s) 415, 450
CviAII CATG 3 cut(s) 284, 374, 832
CviQI GTAC 2 cut(s) 22, 766
DdeI CTNAG 4 cut(s) 88, 301, 984, 1073
DpnI GATC 4 cut(s) 65, 131, 600, 775
DpnII GATC 4 cut(s) 63, 129, 598, 773
EaeI YGGCCR 1 cut(s) 909
Eam1104I CTCTTC 2 cut(s) 542, 696
EarI CTCTTC 2 cut(s) 542, 696
Eco24I GRGCYC 1 cut(s) 270
Eco32I GATATC 1 cut(s) 944
Eco47I GGWCC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 138
Eco88I CYCGRG 3 cut(s) 214, 452, 935
EcoO109I RGGNCCY 1 cut(s) 266
EcoRII CCWGG 3 cut(s) 410, 582, 883
EcoRV GATATC 1 cut(s) 944
EcoT22I ATGCAT 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 270
FaeI CATG 3 cut(s) 287, 377, 835
FalI AAGNNNNNCTT 4 cut(s) 242, 274, 881, 913
FatI CATG 3 cut(s) 283, 373, 831
FauNDI CATATG 1 cut(s) 316
FbaI TGATCA 2 cut(s) 129, 598
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 4 cut(s) 25, 91, 240, 665
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 94
FspAI RTGCGCAY 1 cut(s) 1044
FspBI CTAG 2 cut(s) 800, 813
FspI TGCGCA 1 cut(s) 1044
GlaI GCGC 1 cut(s) 1044
GluI GCNGC 1 cut(s) 94
HaeIII GGCC 3 cut(s) 268, 415, 911
HapII CCGG 2 cut(s) 152, 453
HhaI GCGC 1 cut(s) 1045
Hin1II CATG 3 cut(s) 287, 377, 835
Hin6I GCGC 1 cut(s) 1043
HinP1I GCGC 1 cut(s) 1043
HinfI GANTC 1 cut(s) 205
HpaII CCGG 2 cut(s) 152, 453
Hpy166II GTNNAC 1 cut(s) 877
Hpy188I TCNGA 4 cut(s) 369, 598, 763, 809
Hpy188III TCNNGA 7 cut(s) 76, 116, 127, 144, 800, 859, 977
Hpy8I GTNNAC 1 cut(s) 877
HpyAV CCTTC 2 cut(s) 392, 890
HpyCH4III ACNGT 2 cut(s) 689, 874
HpyF10VI GCNNNNNNNGC 2 cut(s) 402, 566
HpyF3I CTNAG 4 cut(s) 88, 301, 984, 1073
Hsp92II CATG 3 cut(s) 287, 377, 835
HspAI GCGC 1 cut(s) 1043
Ksp22I TGATCA 2 cut(s) 129, 598
Kzo9I GATC 4 cut(s) 63, 129, 598, 773
LguI GCTCTTC 1 cut(s) 696
LmnI GCTCC 1 cut(s) 894
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 6 cut(s) 241, 262, 547, 643, 709, 723
MaeI CTAG 2 cut(s) 800, 813
MaeIII GTNAC 1 cut(s) 83
MalI GATC 4 cut(s) 65, 131, 600, 775
MboI GATC 4 cut(s) 63, 129, 598, 773
MboII GAAGA 3 cut(s) 131, 559, 713
MhlI GDGCHC 2 cut(s) 270, 536
MlsI TGGCCA 1 cut(s) 911
MluCI AATT 7 cut(s) 273, 328, 363, 561, 756, 777, 1005
MluNI TGGCCA 1 cut(s) 911
Mox20I TGGCCA 1 cut(s) 911
Mph1103I ATGCAT 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 705
MscI TGGCCA 1 cut(s) 911
MseI TTAA 8 cut(s) 71, 237, 249, 260, 459, 615, 755, 1008
MslI CAYNNNNRTG 4 cut(s) 512, 830, 917, 1050
Msp20I TGGCCA 1 cut(s) 911
MspI CCGG 2 cut(s) 152, 453
MspR9I CCNGG 5 cut(s) 412, 453, 454, 584, 885
Mva1269I GAATGC 3 cut(s) 234, 396, 437
MvaI CCWGG 3 cut(s) 412, 584, 885
MwoI GCNNNNNNNGC 2 cut(s) 402, 566
NciI CCSGG 2 cut(s) 453, 454
NdeI CATATG 1 cut(s) 316
NdeII GATC 4 cut(s) 63, 129, 598, 773
NlaIII CATG 3 cut(s) 287, 377, 835
NlaIV GGNNCC 3 cut(s) 103, 268, 446
NsbI TGCGCA 1 cut(s) 1044
NsiI ATGCAT 1 cut(s) 234
NspI RCATGY 2 cut(s) 377, 835
NspV TTCGAA 1 cut(s) 208
PaeR7I CTCGAG 1 cut(s) 214
PciI ACATGT 2 cut(s) 373, 831
PciSI GCTCTTC 1 cut(s) 696
PctI GAATGC 3 cut(s) 234, 396, 437
PdmI GAANNNNTTC 1 cut(s) 705
PfeI GAWTC 1 cut(s) 205
PfoI TCCNGGA 1 cut(s) 883
PinAI ACCGGT 1 cut(s) 151
PkrI GCNGC 1 cut(s) 95
PscI ACATGT 2 cut(s) 373, 831
PshBI ATTAAT 1 cut(s) 755
PsiI TTATAA 2 cut(s) 14, 972
Psp6I CCWGG 3 cut(s) 410, 582, 883
PspGI CCWGG 3 cut(s) 410, 582, 883
PspN4I GGNNCC 3 cut(s) 103, 268, 446
PspOMI GGGCCC 1 cut(s) 266
PspPI GGNCC 3 cut(s) 266, 267, 379
PspXI VCTCGAGB 1 cut(s) 214
PstNI CAGNNNCTG 2 cut(s) 722, 1001
RsaI GTAC 2 cut(s) 23, 767
RsaNI GTAC 2 cut(s) 22, 766
RseI CAYNNNNRTG 4 cut(s) 512, 830, 917, 1050
SapI GCTCTTC 1 cut(s) 696
SaqAI TTAA 8 cut(s) 71, 237, 249, 260, 459, 615, 755, 1008
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 4 cut(s) 63, 129, 598, 773
Sau96I GGNCC 3 cut(s) 266, 267, 379
ScrFI CCNGG 5 cut(s) 412, 453, 454, 584, 885
SduI GDGCHC 2 cut(s) 270, 536
SfaNI GCATC 6 cut(s) 241, 262, 547, 643, 709, 723
Sfr274I CTCGAG 1 cut(s) 214
SfuI TTCGAA 1 cut(s) 208
SinI GGWCC 1 cut(s) 379
SlaI CTCGAG 1 cut(s) 214
SmaI CCCGGG 1 cut(s) 454
SmiMI CAYNNNNRTG 4 cut(s) 512, 830, 917, 1050
SmlI CTYRAG 2 cut(s) 214, 641
SmoI CTYRAG 2 cut(s) 214, 641
Sse9I AATT 7 cut(s) 273, 328, 363, 561, 756, 777, 1005
SsiI CCGC 1 cut(s) 1016
SspI AATATT 1 cut(s) 247
SspMI CTAG 2 cut(s) 800, 813
StyD4I CCNGG 5 cut(s) 410, 451, 452, 582, 883
TaaI ACNGT 2 cut(s) 689, 874
TaqI TCGA 3 cut(s) 208, 215, 678
TasI AATT 7 cut(s) 273, 328, 363, 561, 756, 777, 1005
TatI WGTACW 2 cut(s) 21, 765
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 8 cut(s) 71, 237, 249, 260, 459, 615, 755, 1008
Tru9I TTAA 8 cut(s) 71, 237, 249, 260, 459, 615, 755, 1008
TscAI CASTG 3 cut(s) 433, 608, 694
TseI GCWGC 1 cut(s) 93
TspDTI ATGAA 2 cut(s) 303, 333
TspMI CCCGGG 1 cut(s) 452
TspRI CASTG 3 cut(s) 433, 608, 694
VpaK11BI GGWCC 1 cut(s) 379
VspI ATTAAT 1 cut(s) 755
XapI RAATTY 1 cut(s) 328
XbaI TCTAGA 1 cut(s) 799
XceI RCATGY 2 cut(s) 377, 835
XcmI CCANNNNNNNNNTGG 1 cut(s) 580
XhoI CTCGAG 1 cut(s) 214
XmaI CCCGGG 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 705
XspI CTAG 2 cut(s) 800, 813
Zsp2I ATGCAT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.