Rh1AG191200

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
36365431 .. 36366042
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG191200.1

Sequence Viewer

Length: 612 bp
ATGGATAGTTCTTGTGACTATATACTTGTCCAGACTGGTAGTGCAAAGTCAGTCTATTGTGCAAAAACATTTGCCAAGTATATGGACTTAGATCTTCCAAGTTGTGAGATGTATCTCGGTTTCAATGATTTCTTTGTCCATGGTTCGTGCAATGGATTGCTGTGCATCCGTGTTAACTATGAACCTTTGAACAGTTCCATGTATATATGGAATATTCCATCGAACAGAAAAATCAAGAAACTTCCACAAGATCTTTATTACCATTATAATGTCAGTCTCGGGTTTGGATTTCACCATCAGAAAAACGACTATAAAGTTGTGAGGATTGTACGCGGGGAGGGTATGAAAGTTGAGGTCTACTCCCTTAGATTGAATTCATGGAGAGAACTTAGTGCAGTTCTCCCCATTTGGTTATACTCTACATACCTAAACCAATGTGCAATACATGTCAATGGAGTTGTGTACTGGATGGTAAGGGAGAAAAACTCTGCAAGATCTTTCATACTTTCTTTTGATATGGACAATGTCGGAGGGATTGGTTCTGTTAGTATCCAAGTGTTTGAGAAATCCCTTTTTTTGATACACTTGAGAGAAGTGAGGATCATCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

203

Amino Acids

23.53

Weight (kDa)

8.67

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 44 - 173 6.4e-14 F-box associated beta propeller domain
FBA_1 PF07734 49 - 174 4.5e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
AccI GTMKAC 1 cut(s) 357
AccII CGCG 1 cut(s) 333
AciI CCGC 1 cut(s) 333
AclWI GGATC 1 cut(s) 608
AcsI RAATTY 1 cut(s) 373
AfaI GTAC 2 cut(s) 330, 464
AflIII ACRYGT 1 cut(s) 445
AgsI TTSAA 3 cut(s) 124, 190, 373
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 1 cut(s) 608
Ama87I CYCGRG 1 cut(s) 278
ApoI RAATTY 1 cut(s) 373
AsuHPI GGTGA 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 278
BccI CCATC 3 cut(s) 226, 303, 463
BciVI GTATCC 1 cut(s) 560
BcoDI GTCTC 1 cut(s) 281
BfuI GTATCC 1 cut(s) 560
BglII AGATCT 3 cut(s) 91, 250, 494
BmeT110I CYCGRG 1 cut(s) 278
BmsI GCATC 1 cut(s) 174
BplI GAGNNNNNCTC 4 cut(s) 344, 376, 470, 502
BpuEI CTTGAG 1 cut(s) 607
BsaJI CCNNGG 1 cut(s) 139
Bse1I ACTGG 2 cut(s) 40, 470
Bse3DI GCAATG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 2 cut(s) 165, 474
BseMI GCAATG 1 cut(s) 157
BseNI ACTGG 2 cut(s) 40, 470
BsgI GTGCAG 1 cut(s) 414
Bsh1236I CGCG 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 278
BsmAI GTCTC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 278
Bsp143I GATC 4 cut(s) 91, 250, 494, 600
Bsp19I CCATGG 1 cut(s) 139
BspACI CCGC 1 cut(s) 333
BspFNI CGCG 1 cut(s) 333
BspPI GGATC 1 cut(s) 608
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 2 cut(s) 40, 470
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 4 cut(s) 91, 250, 494, 600
BssT1I CCWWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 194
BstDEI CTNAG 3 cut(s) 88, 365, 389
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 2 cut(s) 165, 474
BstFNI CGCG 1 cut(s) 333
BstKTI GATC 4 cut(s) 94, 253, 497, 603
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 4 cut(s) 91, 250, 494, 600
BstNSI RCATGY 1 cut(s) 449
BstUI CGCG 1 cut(s) 333
BstX2I RGATCY 3 cut(s) 91, 250, 494
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 3 cut(s) 91, 250, 494
BsuI GTATCC 1 cut(s) 560
BtgI CCRYGG 1 cut(s) 139
BtsCI GGATG 2 cut(s) 165, 474
Csp6I GTAC 2 cut(s) 329, 463
CviAII CATG 4 cut(s) 140, 199, 378, 446
CviQI GTAC 2 cut(s) 329, 463
DdeI CTNAG 3 cut(s) 88, 365, 389
DpnI GATC 4 cut(s) 93, 252, 496, 602
DpnII GATC 4 cut(s) 91, 250, 494, 600
Eco130I CCWWGG 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 278
EcoRI GAATTC 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 4 cut(s) 143, 202, 381, 449
FatI CATG 4 cut(s) 139, 198, 377, 445
FauI CCCGC 1 cut(s) 326
FblI GTMKAC 1 cut(s) 357
FokI GGATG 2 cut(s) 152, 481
Hin1II CATG 4 cut(s) 143, 202, 381, 449
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HpaI GTTAAC 1 cut(s) 175
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 3 cut(s) 175, 358, 463
Hpy188I TCNGA 2 cut(s) 300, 530
Hpy188III TCNNGA 2 cut(s) 31, 235
Hpy8I GTNNAC 3 cut(s) 175, 358, 463
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 7 cut(s) 44, 62, 150, 165, 395, 440, 491
HpyF3I CTNAG 3 cut(s) 88, 365, 389
Hsp92II CATG 4 cut(s) 143, 202, 381, 449
KspAI GTTAAC 1 cut(s) 175
Kzo9I GATC 4 cut(s) 91, 250, 494, 600
LpnPI CCDG 3 cut(s) 21, 44, 451
LweI GCATC 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 14
MalI GATC 4 cut(s) 93, 252, 496, 602
MboI GATC 4 cut(s) 91, 250, 494, 600
MboII GAAGA 1 cut(s) 86
MflI RGATCY 3 cut(s) 91, 250, 494
MluCI AATT 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 508
MnlI CCTC 5 cut(s) 315, 331, 346, 524, 591
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 2 cut(s) 267, 450
MvnI CGCG 1 cut(s) 333
NcoI CCATGG 1 cut(s) 139
NdeII GATC 4 cut(s) 91, 250, 494, 600
NlaIII CATG 4 cut(s) 143, 202, 381, 449
NmuCI GTSAC 1 cut(s) 14
NspI RCATGY 1 cut(s) 449
PciI ACATGT 1 cut(s) 445
PflFI GACNNNGTC 1 cut(s) 524
PscI ACATGT 1 cut(s) 445
PsiI TTATAA 1 cut(s) 267
PsuI RGATCY 3 cut(s) 91, 250, 494
PsyI GACNNNGTC 1 cut(s) 524
RsaI GTAC 2 cut(s) 330, 464
RsaNI GTAC 2 cut(s) 329, 463
RseI CAYNNNNRTG 2 cut(s) 267, 450
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 4 cut(s) 91, 250, 494, 600
SetI ASST 3 cut(s) 187, 357, 429
SfaNI GCATC 1 cut(s) 174
SmiMI CAYNNNNRTG 2 cut(s) 267, 450
SmlI CTYRAG 1 cut(s) 586
SmoI CTYRAG 1 cut(s) 586
Sse9I AATT 1 cut(s) 373
SsiI CCGC 1 cut(s) 333
SspI AATATT 1 cut(s) 214
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 221
TasI AATT 1 cut(s) 373
TatI WGTACW 1 cut(s) 462
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseFI GTSAC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 4 cut(s) 195, 359, 366, 490
TspGWI ACGGA 1 cut(s) 158
Tth111I GACNNNGTC 1 cut(s) 524
XapI RAATTY 1 cut(s) 373
XceI RCATGY 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.