Prupe.1G188300_v2.0.a1

F-box protein CPR30-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000234
Physical Location & Seq
Reverse (-)
17236744 .. 17239897
3154 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G188300.1

Sequence Viewer

Length: 1032 bp
ATGGTGGCTGGGTTTGGGAGGTGGTTGAGGATGACGTCCACAAACTGCAAGAATTCCATTTATATCCCTGAAGAAATCTTGATCGACATCCTACTAAGATTACCAGTAAAATCCCTTGTTCGGTTTATGTGTGTTTGCAAGTCATGGAGGGATTTGATTGAAAGCTCGAGTTTTATAGGCAGACATCTTAATAGGAATGTTAAAAACCATGGCCTTACTTTTCTAGTTGGTCTCGAGTGCAATGAAGTCAAACCCAAAATTCGCCATTCCATTTTCTCTAATGAAACATTTAAGGCAACATGCTTGGACATGGGAGGTTTTGGGTTATATGGTTCAAGTAATGGTTTAGTTTGTCTGTCATGTAAAAGTCTGGATTTGCATTGTCCTGTAACCATATGTAACCCATCAATCATGAAATTTGTCCGCCTTCCAGTCACCAACGTTTCTTGCCCCCCCAAATACCAGTATCGTTGTGTTCTTACATTCGGGTTCAACTCCAGGCTCAACGACTACAAGGTAGTAAGGTTGGTAACGTTTATTCGGGGGAAGAAATGCAATGAAGTGGAGGTTTACAGTTTAAGTACAAACTCTTGGAAGAGCATTGGTGTAATTCCTCCTTGGATACATGCCTTGGGCTGGCATTCTGGACGTGCAGTTTCTAATGGGATAGCATACTGGATTATGGGACGGGGAGAGGGTGATAGCTTTCATCTCGTGTCGTTTGATACTGGCAGTGAGGTATTTGAACAAGTGTTGCTGCCGGAGGCTATTGTGGAGGGACTTGAAGGCGTTGAGGGAGAAATTCAGGCGTACAAGGAGTCGAAGTCTTTTAAAAAGATAGAGAAGGTTGTTGCTCCAGGAACGAGTCTTAGTCTTACCCCATTGGGCTTTAGAATGAGAAACGAACTCCTCCTAGAGCTTCATGAAAAAAACAGTGAAGGTGCCTATTATCTGAAACGAAGAACTTGGAATTTAGAATTTAGCTTTTTTTTTTTTGGGAGTATTGCATTTGAGAAATGTTTTAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

344

Amino Acids

38.88

Weight (kDa)

8.97

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 38
AccB1I GGYRCC 1 cut(s) 941
AciI CCGC 1 cut(s) 424
AclI AACGTT 2 cut(s) 441, 533
AcsI RAATTY 6 cut(s) 52, 258, 416, 801, 970, 977
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 2 cut(s) 583, 812
AfiI CCNNNNNNNGG 2 cut(s) 120, 636
AgsI TTSAA 5 cut(s) 161, 336, 493, 746, 785
AjiI CACGTC 1 cut(s) 650
AjnI CCWGG 2 cut(s) 497, 856
AluBI AGCT 4 cut(s) 165, 705, 919, 984
AluI AGCT 4 cut(s) 165, 705, 919, 984
Alw26I GTCTC 1 cut(s) 236
Ama87I CYCGRG 2 cut(s) 166, 233
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 757
ApoI RAATTY 6 cut(s) 52, 258, 416, 801, 970, 977
AsuHPI GGTGA 2 cut(s) 427, 710
AvaI CYCGRG 2 cut(s) 166, 233
BanI GGYRCC 1 cut(s) 941
BauI CACGAG 1 cut(s) 713
BbvI GCAGC 1 cut(s) 744
BccI CCATC 1 cut(s) 412
BciT130I CCWGG 2 cut(s) 499, 858
BciVI GTATCC 1 cut(s) 615
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 2 cut(s) 224, 914
BfuI GTATCC 1 cut(s) 615
BisI GCNGC 1 cut(s) 758
BlsI GCNGC 1 cut(s) 759
Bme1390I CCNGG 2 cut(s) 499, 858
BmeT110I CYCGRG 2 cut(s) 166, 233
BmgBI CACGTC 1 cut(s) 650
BmiI GGNNCC 1 cut(s) 943
BmrFI CCNGG 2 cut(s) 499, 858
BpmI CTGGAG 2 cut(s) 481, 840
BsaBI GATNNNNATC 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 3 cut(s) 208, 617, 630
BsaXI ACNNNNNCTCC 2 cut(s) 809, 839
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 636
Bse1I ACTGG 5 cut(s) 104, 431, 463, 680, 733
Bse3DI GCAATG 2 cut(s) 247, 562
Bse8I GATNNNNATC 1 cut(s) 86
BseBI CCWGG 2 cut(s) 499, 858
BseDI CCNNGG 3 cut(s) 208, 617, 630
BseGI GGATG 2 cut(s) 36, 87
BseJI GATNNNNATC 1 cut(s) 86
BseLI CCNNNNNNNGG 2 cut(s) 120, 636
BseMI GCAATG 2 cut(s) 247, 562
BseNI ACTGG 5 cut(s) 104, 431, 463, 680, 733
BseRI GAGGAG 1 cut(s) 899
BseXI GCAGC 1 cut(s) 744
BseYI CCCAGC 1 cut(s) 8
BsgI GTGCAG 1 cut(s) 672
BshFI GGCC 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 941
BsiHKCI CYCGRG 2 cut(s) 166, 233
BsiSI CCGG 1 cut(s) 761
BslFI GGGAC 2 cut(s) 699, 792
BslI CCNNNNNNNGG 2 cut(s) 120, 636
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 2 cut(s) 699, 792
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 1 cut(s) 213
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 2 cut(s) 166, 233
Bsp143I GATC 1 cut(s) 81
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 1 cut(s) 424
BspANI GGCC 1 cut(s) 213
BspHI TCATGA 2 cut(s) 411, 922
BspLI GGNNCC 1 cut(s) 943
BspQI GCTCTTC 1 cut(s) 590
BspT107I GGYRCC 1 cut(s) 941
BspTNI GGTCTC 1 cut(s) 236
BsrDI GCAATG 2 cut(s) 247, 562
BsrI ACTGG 5 cut(s) 104, 431, 463, 680, 733
BssECI CCNNGG 3 cut(s) 208, 617, 630
BssMI GATC 1 cut(s) 81
BssNI GRCGYC 1 cut(s) 35
BssSI CACGAG 1 cut(s) 713
BssT1I CCWWGG 3 cut(s) 208, 617, 630
Bst2BI CACGAG 1 cut(s) 713
Bst2UI CCWGG 2 cut(s) 499, 858
Bst4CI ACNGT 2 cut(s) 575, 935
Bst6I CTCTTC 1 cut(s) 590
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 638
BstDEI CTNAG 2 cut(s) 95, 869
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 2 cut(s) 36, 87
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 1 cut(s) 81
BstNI CCWGG 2 cut(s) 499, 858
BstNSI RCATGY 2 cut(s) 303, 629
BstSCI CCNGG 2 cut(s) 497, 856
BstV1I GCAGC 1 cut(s) 744
BsuI GTATCC 1 cut(s) 615
BsuRI GGCC 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 208
BtrI CACGTC 1 cut(s) 650
BtsCI GGATG 2 cut(s) 36, 87
BtsI GCAGTG 1 cut(s) 739
BtsIMutI CAGTG 2 cut(s) 739, 940
Cac8I GCNNGC 1 cut(s) 638
CciI TCATGA 2 cut(s) 411, 922
Csp6I GTAC 2 cut(s) 582, 811
CviAII CATG 8 cut(s) 144, 209, 300, 310, 360, 412, 626, 923
CviQI GTAC 2 cut(s) 582, 811
DdeI CTNAG 2 cut(s) 95, 869
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
DraI TTTAAA 1 cut(s) 832
Eam1104I CTCTTC 1 cut(s) 590
EarI CTCTTC 1 cut(s) 590
EciI GGCGGA 1 cut(s) 413
Eco130I CCWWGG 3 cut(s) 208, 617, 630
Eco31I GGTCTC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 90
Eco88I CYCGRG 2 cut(s) 166, 233
EcoRI GAATTC 1 cut(s) 52
EcoRII CCWGG 2 cut(s) 497, 856
EcoT14I CCWWGG 3 cut(s) 208, 617, 630
ErhI CCWWGG 3 cut(s) 208, 617, 630
FaeI CATG 8 cut(s) 147, 212, 303, 313, 363, 415, 629, 926
FaqI GGGAC 2 cut(s) 699, 792
FatI CATG 8 cut(s) 143, 208, 299, 309, 359, 411, 625, 922
FauNDI CATATG 1 cut(s) 395
Fnu4HI GCNGC 1 cut(s) 758
FokI GGATG 2 cut(s) 43, 74
Fsp4HI GCNGC 1 cut(s) 758
FspBI CTAG 2 cut(s) 224, 914
GluI GCNGC 1 cut(s) 758
GsaI CCCAGC 1 cut(s) 12
GsuI CTGGAG 2 cut(s) 481, 840
HaeIII GGCC 1 cut(s) 213
HapII CCGG 1 cut(s) 761
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 8 cut(s) 147, 212, 303, 313, 363, 415, 629, 926
HinfI GANTC 2 cut(s) 818, 865
HpaII CCGG 1 cut(s) 761
HphI GGTGA 2 cut(s) 427, 710
Hpy166II GTNNAC 2 cut(s) 39, 571
Hpy188I TCNGA 1 cut(s) 954
Hpy188III TCNNGA 6 cut(s) 79, 233, 371, 412, 645, 923
Hpy8I GTNNAC 2 cut(s) 39, 571
HpyAV CCTTC 4 cut(s) 437, 779, 838, 932
HpyCH4III ACNGT 2 cut(s) 575, 935
HpyCH4IV ACGT 4 cut(s) 35, 441, 533, 649
HpyCH4V TGCA 7 cut(s) 48, 138, 240, 379, 555, 653, 1007
HpyF3I CTNAG 2 cut(s) 95, 869
HpySE526I ACGT 4 cut(s) 35, 441, 533, 649
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 8 cut(s) 147, 212, 303, 313, 363, 415, 629, 926
Kzo9I GATC 1 cut(s) 81
LguI GCTCTTC 1 cut(s) 590
LmnI GCTCC 1 cut(s) 859
Lsp1109I GCAGC 1 cut(s) 744
MaeI CTAG 2 cut(s) 224, 914
MaeII ACGT 4 cut(s) 35, 441, 533, 649
MaeIII GTNAC 4 cut(s) 388, 398, 433, 529
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 4 cut(s) 83, 559, 607, 972
MluCI AATT 7 cut(s) 52, 258, 416, 609, 801, 970, 977
MlyI GAGTC 2 cut(s) 827, 874
MseI TTAA 7 cut(s) 189, 201, 291, 578, 831, 1023, 1030
MspI CCGG 1 cut(s) 761
MspR9I CCNGG 2 cut(s) 499, 858
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 2 cut(s) 499, 858
NcoI CCATGG 1 cut(s) 208
NdeI CATATG 1 cut(s) 395
NdeII GATC 1 cut(s) 81
NlaIII CATG 8 cut(s) 147, 212, 303, 313, 363, 415, 629, 926
NlaIV GGNNCC 1 cut(s) 943
NmuCI GTSAC 1 cut(s) 433
NspI RCATGY 2 cut(s) 303, 629
PaeR7I CTCGAG 2 cut(s) 166, 233
PagI TCATGA 2 cut(s) 411, 922
PciSI GCTCTTC 1 cut(s) 590
PctI GAATGC 1 cut(s) 640
PfoI TCCNGGA 1 cut(s) 856
PkrI GCNGC 1 cut(s) 759
PleI GAGTC 2 cut(s) 826, 873
PpsI GAGTC 2 cut(s) 826, 873
Psp1406I AACGTT 2 cut(s) 441, 533
Psp6I CCWGG 2 cut(s) 497, 856
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 2 cut(s) 497, 856
PspN4I GGNNCC 1 cut(s) 943
PspXI VCTCGAGB 1 cut(s) 166
RsaI GTAC 2 cut(s) 583, 812
RsaNI GTAC 2 cut(s) 582, 811
SapI GCTCTTC 1 cut(s) 590
SaqAI TTAA 7 cut(s) 189, 201, 291, 578, 831, 1023, 1030
SatI GCNGC 1 cut(s) 758
Sau3AI GATC 1 cut(s) 81
SchI GAGTC 2 cut(s) 827, 874
ScrFI CCNGG 2 cut(s) 499, 858
Sfr274I CTCGAG 2 cut(s) 166, 233
SlaI CTCGAG 2 cut(s) 166, 233
SmlI CTYRAG 2 cut(s) 166, 233
SmoI CTYRAG 2 cut(s) 166, 233
Sse9I AATT 7 cut(s) 52, 258, 416, 609, 801, 970, 977
SsiI CCGC 1 cut(s) 424
SspMI CTAG 2 cut(s) 224, 914
StyD4I CCNGG 2 cut(s) 497, 856
StyI CCWWGG 3 cut(s) 208, 617, 630
TaaI ACNGT 2 cut(s) 575, 935
TaiI ACGT 4 cut(s) 38, 444, 536, 652
TaqI TCGA 4 cut(s) 84, 167, 234, 821
TasI AATT 7 cut(s) 52, 258, 416, 609, 801, 970, 977
TatI WGTACW 1 cut(s) 581
Tru1I TTAA 7 cut(s) 189, 201, 291, 578, 831, 1023, 1030
Tru9I TTAA 7 cut(s) 189, 201, 291, 578, 831, 1023, 1030
TscAI CASTG 2 cut(s) 739, 940
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 1 cut(s) 757
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 7 cut(s) 258, 297, 428, 573, 698, 911, 939
TspRI CASTG 2 cut(s) 739, 940
XapI RAATTY 6 cut(s) 52, 258, 416, 801, 970, 977
XceI RCATGY 2 cut(s) 303, 629
XhoI CTCGAG 2 cut(s) 166, 233
XspI CTAG 2 cut(s) 224, 914
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.