Rh6AG445500

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000234
Physical Location & Seq
Forward (+)
63274346 .. 63274993
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG445500.1

Sequence Viewer

Length: 648 bp
ATGTCTACCATCGAAGACCTACCTGCAGAAATATTGTTTGATATCTTTGCAAGATTACCTGTGAAATCTGCTTTCCTACTAAGATGGGTTTGCAAATCTTTCAAGACTTTAATTACAAGTTCTGATTTCATACACTTCCATCTCGAAAGGAATCCCATGAAAAATTCTTCCGATTATCTACTTATCCGCAGTACAGAGATTGAATGCATGTCACGCATTTGTGCTAGAACATTTGCTAGGGATTTGGATATAAAGCTTCCTGAGAATGCTGTGTACGAGTTGGGTTCTGAATTAACTGTTTATGGTTCATACAATGGGTTGCTTTGCATATCCAACAGGTATCTGTGTGTAGATAGCCCTATATACTTGTGGAATCCATCAATTAGAAAAATCAGAAGACTTCCCTATGGCCTCATCACAAGCACAATTAATGACCACGATTATCAAGTTACTCTTGGGATGGGGTTCCATTCTGCAGGTGGGAATGACTATAAGGTTATAAAGTTTGTGCACCATGATACTGACTCTGAAAATACTTTTCAAGTTGAGGTATACAGTCTTAATTCAAATTCTTGGAAAAGAATAAGCAGAGTTCCGATCCCCCTGTTCCACGAGATGCTTATTTTCGCCCCAAATGTGCATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

215

Amino Acids

24.85

Weight (kDa)

6.7

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 44 5.9e-08 F-box domain
F-box-like PF12937 4 - 41 1.5e-06 F-box-like
FBA_3 PF08268 83 - 196 1.4e-07 F-box associated beta propeller domain
FBA_1 PF07734 102 - 197 6e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 500
AarI CACCTGC 1 cut(s) 467
Acc36I ACCTGC 2 cut(s) 31, 467
AccI GTMKAC 2 cut(s) 5, 552
AciI CCGC 1 cut(s) 187
AclWI GGATC 1 cut(s) 592
AcsI RAATTY 2 cut(s) 163, 568
AfaI GTAC 2 cut(s) 193, 275
AgsI TTSAA 4 cut(s) 103, 203, 542, 567
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
Alw21I GWGCWC 1 cut(s) 513
Alw44I GTGCAC 1 cut(s) 509
AlwI GGATC 1 cut(s) 592
AoxI GGCC 1 cut(s) 409
ApaLI GTGCAC 1 cut(s) 509
ApoI RAATTY 2 cut(s) 163, 568
AseI ATTAAT 1 cut(s) 429
BaeGI GKGCMC 1 cut(s) 513
BauI CACGAG 1 cut(s) 611
BbsI GAAGAC 2 cut(s) 21, 403
Bbv12I GWGCWC 1 cut(s) 513
BccI CCATC 5 cut(s) 17, 78, 147, 385, 454
BfaI CTAG 2 cut(s) 225, 237
BfmI CTRYAG 2 cut(s) 24, 474
BfuAI ACCTGC 2 cut(s) 31, 467
BmiI GGNNCC 1 cut(s) 467
BmsI GCATC 1 cut(s) 606
BpiI GAAGAC 2 cut(s) 21, 403
BseGI GGATG 1 cut(s) 465
BseMII CTCAG 1 cut(s) 252
BseSI GKGCMC 1 cut(s) 513
BshFI GGCC 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 513
BsmI GAATGC 2 cut(s) 209, 271
BsnI GGCC 1 cut(s) 411
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 1 cut(s) 597
BspACI CCGC 1 cut(s) 187
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 467
BspMAI CTGCAG 2 cut(s) 28, 478
BspMI ACCTGC 2 cut(s) 31, 467
BspPI GGATC 1 cut(s) 592
BssMI GATC 1 cut(s) 597
BssNAI GTATAC 1 cut(s) 553
BssSI CACGAG 1 cut(s) 611
Bst1107I GTATAC 1 cut(s) 553
Bst2BI CACGAG 1 cut(s) 611
Bst4CI ACNGT 2 cut(s) 298, 557
BstDEI CTNAG 2 cut(s) 80, 261
BstF5I GGATG 1 cut(s) 465
BstKTI GATC 1 cut(s) 600
BstMBI GATC 1 cut(s) 597
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstNSI RCATGY 1 cut(s) 211
BstSFI CTRYAG 2 cut(s) 24, 474
BstSLI GKGCMC 1 cut(s) 513
BstV2I GAAGAC 2 cut(s) 21, 403
BstZ17I GTATAC 1 cut(s) 553
BsuRI GGCC 1 cut(s) 411
BtsCI GGATG 1 cut(s) 465
BveI ACCTGC 2 cut(s) 31, 467
Csp6I GTAC 2 cut(s) 192, 274
CviAII CATG 3 cut(s) 157, 208, 515
CviJI RGCY 3 cut(s) 256, 357, 411
CviKI_1 RGCY 3 cut(s) 256, 357, 411
CviQI GTAC 2 cut(s) 192, 274
DdeI CTNAG 2 cut(s) 80, 261
DpnI GATC 1 cut(s) 599
DpnII GATC 1 cut(s) 597
Eco32I GATATC 1 cut(s) 43
EcoRV GATATC 1 cut(s) 43
EcoT22I ATGCAT 1 cut(s) 209
FaeI CATG 3 cut(s) 160, 211, 518
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FatI CATG 3 cut(s) 156, 207, 514
FblI GTMKAC 2 cut(s) 5, 552
FokI GGATG 1 cut(s) 472
FspBI CTAG 2 cut(s) 225, 237
HaeIII GGCC 1 cut(s) 411
Hin1II CATG 3 cut(s) 160, 211, 518
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 3 cut(s) 151, 373, 524
Hpy166II GTNNAC 4 cut(s) 6, 274, 511, 553
Hpy188I TCNGA 6 cut(s) 124, 172, 289, 395, 529, 597
Hpy188III TCNNGA 3 cut(s) 103, 143, 260
Hpy8I GTNNAC 4 cut(s) 6, 274, 511, 553
HpyCH4III ACNGT 2 cut(s) 298, 557
HpyCH4V TGCA 8 cut(s) 26, 50, 93, 207, 327, 476, 511, 640
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 2 cut(s) 80, 261
Hsp92II CATG 3 cut(s) 160, 211, 518
Kzo9I GATC 1 cut(s) 597
LpnPI CCDG 6 cut(s) 36, 72, 273, 322, 462, 617
LweI GCATC 1 cut(s) 606
MaeI CTAG 2 cut(s) 225, 237
MaeIII GTNAC 2 cut(s) 210, 448
MalI GATC 1 cut(s) 599
MboI GATC 1 cut(s) 597
MboII GAAGA 3 cut(s) 26, 159, 408
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 7 cut(s) 111, 163, 290, 381, 426, 562, 568
MlyI GAGTC 1 cut(s) 518
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 2 cut(s) 422, 541
Mph1103I ATGCAT 1 cut(s) 209
MseI TTAA 4 cut(s) 110, 293, 429, 561
Mva1269I GAATGC 2 cut(s) 209, 271
MwoI GCNNNNNNNGC 1 cut(s) 213
NdeII GATC 1 cut(s) 597
NlaIII CATG 3 cut(s) 160, 211, 518
NlaIV GGNNCC 1 cut(s) 467
NmuCI GTSAC 1 cut(s) 210
NsiI ATGCAT 1 cut(s) 209
NspI RCATGY 1 cut(s) 211
PaqCI CACCTGC 1 cut(s) 467
PctI GAATGC 2 cut(s) 209, 271
PfeI GAWTC 2 cut(s) 151, 373
PleI GAGTC 1 cut(s) 518
PpsI GAGTC 1 cut(s) 518
PshBI ATTAAT 1 cut(s) 429
PsiI TTATAA 1 cut(s) 500
PspN4I GGNNCC 1 cut(s) 467
PstI CTGCAG 2 cut(s) 28, 478
RsaI GTAC 2 cut(s) 193, 275
RsaNI GTAC 2 cut(s) 192, 274
SaqAI TTAA 4 cut(s) 110, 293, 429, 561
Sau3AI GATC 1 cut(s) 597
SchI GAGTC 1 cut(s) 518
SduI GDGCHC 1 cut(s) 513
SetI ASST 8 cut(s) 21, 25, 61, 258, 341, 481, 498, 552
SfaNI GCATC 1 cut(s) 606
SfcI CTRYAG 2 cut(s) 24, 474
Sse9I AATT 7 cut(s) 111, 163, 290, 381, 426, 562, 568
SsiI CCGC 1 cut(s) 187
SspI AATATT 1 cut(s) 33
SspMI CTAG 2 cut(s) 225, 237
TaaI ACNGT 2 cut(s) 298, 557
TaqI TCGA 2 cut(s) 12, 144
TasI AATT 7 cut(s) 111, 163, 290, 381, 426, 562, 568
TatI WGTACW 1 cut(s) 191
TfiI GAWTC 2 cut(s) 151, 373
Tru1I TTAA 4 cut(s) 110, 293, 429, 561
Tru9I TTAA 4 cut(s) 110, 293, 429, 561
TseFI GTSAC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 210
TspDTI ATGAA 3 cut(s) 118, 173, 297
VneI GTGCAC 1 cut(s) 509
VspI ATTAAT 1 cut(s) 429
XapI RAATTY 2 cut(s) 163, 568
XceI RCATGY 1 cut(s) 211
XcmI CCANNNNNNNNNTGG 1 cut(s) 476
XmiI GTMKAC 2 cut(s) 5, 552
XspI CTAG 2 cut(s) 225, 237
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.