Rmu_sc0003410.1_g000036

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003410.1
OG0000234
Physical Location & Seq
Reverse (-)
176508 .. 177062
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003410.1_g000036.1.cds

Sequence Viewer

Length: 555 bp
atgttgcatgaatggaaaaagcgttccatggaagttgaggtgtatagtcttagcaccaactcctggaaggtgattgaaattactccttggtttaattctacatggaatttcataggtcatgaggtttgcaatggaatagtatattggctgatttttgaagattattataggattgtgtcctttgatacagggagcgaaaaatttgatgagttggtggttccagatcccataccgcctgttaagggtgatgtcattattcaactgtacaaggaaaccatatgcctgcttcaacgtcataaggacgttgatttatgggttctgcaagaagggtcttttcaaaggctgcgtactatttttctgcctgaagcaaataatttccgaccaataggcttatttacagataatggactcttggtagaagatcaatcaagattcactgacctcaagctacagttgtttgatcttgaatccaaccagcttaaaagtaccggaatccttatgtgcgatcgtaagcgccatacttacatagaaagtctagttctactcgatcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

184

Amino Acids

21.76

Weight (kDa)

5.11

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 63
AciI CCGC 1 cut(s) 233
AclWI GGATC 1 cut(s) 218
AcsI RAATTY 2 cut(s) 106, 200
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 3 cut(s) 266, 349, 487
AfiI CCNNNNNNNGG 2 cut(s) 63, 242
AgsI TTSAA 6 cut(s) 77, 158, 260, 290, 338, 467
AjnI CCWGG 1 cut(s) 62
AjuI GAANNNNNNNTTGG 2 cut(s) 127, 159
AloI GAACNNNNNNTCC 2 cut(s) 7, 39
AluBI AGCT 2 cut(s) 448, 478
AluI AGCT 2 cut(s) 448, 478
AlwI GGATC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 343
ApoI RAATTY 2 cut(s) 106, 200
AspLEI GCGC 1 cut(s) 516
AsuHPI GGTGA 2 cut(s) 82, 257
BbvI GCAGC 1 cut(s) 330
BciT130I CCWGG 1 cut(s) 64
BfaI CTAG 1 cut(s) 536
BfmI CTRYAG 1 cut(s) 449
BfoI RGCGCY 1 cut(s) 517
BisI GCNGC 1 cut(s) 344
BlsI GCNGC 1 cut(s) 345
Bme1390I CCNGG 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 64
BpuEI CTTGAG 1 cut(s) 428
BsaJI CCNNGG 2 cut(s) 27, 86
BsaWI WCCGGW 1 cut(s) 488
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 242
Bse3DI GCAATG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 27, 86
BseLI CCNNNNNNNGG 2 cut(s) 63, 242
BseMI GCAATG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 330
Bsh1285I CGRYCG 1 cut(s) 508
BsiEI CGRYCG 1 cut(s) 508
BsiSI CCGG 1 cut(s) 489
BslI CCNNNNNNNGG 2 cut(s) 63, 242
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 5 cut(s) 223, 421, 460, 505, 547
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 1 cut(s) 233
BspHI TCATGA 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 136
BsrGI TGTACA 1 cut(s) 264
BssECI CCNNGG 2 cut(s) 27, 86
BssMI GATC 5 cut(s) 223, 421, 460, 505, 547
BssT1I CCWWGG 2 cut(s) 27, 86
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 264, 453
BstAUI TGTACA 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 27
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 5 cut(s) 226, 424, 463, 508, 550
BstMBI GATC 5 cut(s) 223, 421, 460, 505, 547
BstMCI CGRYCG 1 cut(s) 508
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 449
BstV1I GCAGC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BtgI CCRYGG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 435
Cac8I GCNNGC 1 cut(s) 284
CciI TCATGA 1 cut(s) 118
CfoI GCGC 1 cut(s) 516
Csp6I GTAC 3 cut(s) 265, 348, 486
CviAII CATG 4 cut(s) 8, 28, 102, 119
CviJI RGCY 5 cut(s) 148, 343, 390, 448, 478
CviKI_1 RGCY 5 cut(s) 148, 343, 390, 448, 478
CviQI GTAC 3 cut(s) 265, 348, 486
DdeI CTNAG 1 cut(s) 50
DpnI GATC 5 cut(s) 225, 423, 462, 507, 549
DpnII GATC 5 cut(s) 223, 421, 460, 505, 547
Eco130I CCWWGG 2 cut(s) 27, 86
Eco57I CTGAAG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 62
EcoT14I CCWWGG 2 cut(s) 27, 86
ErhI CCWWGG 2 cut(s) 27, 86
FaeI CATG 4 cut(s) 11, 31, 105, 122
FatI CATG 4 cut(s) 7, 27, 101, 118
FauNDI CATATG 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 344
Fsp4HI GCNGC 1 cut(s) 344
FspBI CTAG 1 cut(s) 536
GlaI GCGC 1 cut(s) 515
GluI GCNGC 1 cut(s) 344
HaeII RGCGCY 1 cut(s) 517
HapII CCGG 1 cut(s) 489
HhaI GCGC 1 cut(s) 516
Hin1II CATG 4 cut(s) 11, 31, 105, 122
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HinfI GANTC 4 cut(s) 408, 432, 467, 492
HpaII CCGG 1 cut(s) 489
HphI GGTGA 2 cut(s) 82, 257
Hpy188I TCNGA 1 cut(s) 380
Hpy188III TCNNGA 4 cut(s) 119, 221, 429, 464
HpyAV CCTTC 2 cut(s) 61, 320
HpyCH4III ACNGT 2 cut(s) 264, 453
HpyCH4IV ACGT 2 cut(s) 292, 303
HpyCH4V TGCA 3 cut(s) 7, 129, 322
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 2 cut(s) 292, 303
Hsp92II CATG 4 cut(s) 11, 31, 105, 122
HspAI GCGC 1 cut(s) 514
Kzo9I GATC 5 cut(s) 223, 421, 460, 505, 547
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 9 cut(s) 49, 76, 174, 234, 249, 296, 375, 488, 502
Lsp1109I GCAGC 1 cut(s) 330
MaeI CTAG 1 cut(s) 536
MaeII ACGT 2 cut(s) 292, 303
MalI GATC 5 cut(s) 225, 423, 462, 507, 549
MboI GATC 5 cut(s) 223, 421, 460, 505, 547
MboII GAAGA 2 cut(s) 170, 431
MflI RGATCY 1 cut(s) 223
MluCI AATT 5 cut(s) 78, 94, 106, 200, 373
MlyI GAGTC 1 cut(s) 402
MmeI TCCRAC 2 cut(s) 403, 495
MnlI CCTC 3 cut(s) 31, 115, 452
MseI TTAA 3 cut(s) 93, 240, 480
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 1 cut(s) 64
MvaI CCWGG 1 cut(s) 64
NcoI CCATGG 1 cut(s) 27
NdeI CATATG 1 cut(s) 278
NdeII GATC 5 cut(s) 223, 421, 460, 505, 547
NlaIII CATG 4 cut(s) 11, 31, 105, 122
NlaIV GGNNCC 1 cut(s) 219
PagI TCATGA 1 cut(s) 118
PfeI GAWTC 3 cut(s) 432, 467, 492
PflMI CCANNNNNTGG 1 cut(s) 63
PfoI TCCNGGA 1 cut(s) 62
PkrI GCNGC 1 cut(s) 345
Ple19I CGATCG 1 cut(s) 508
PleI GAGTC 1 cut(s) 402
PpsI GAGTC 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 219
PsuI RGATCY 1 cut(s) 223
PvuI CGATCG 1 cut(s) 508
RsaI GTAC 3 cut(s) 266, 349, 487
RsaNI GTAC 3 cut(s) 265, 348, 486
SaqAI TTAA 3 cut(s) 93, 240, 480
SatI GCNGC 1 cut(s) 344
Sau3AI GATC 5 cut(s) 223, 421, 460, 505, 547
SchI GAGTC 1 cut(s) 402
ScrFI CCNGG 1 cut(s) 64
SetI ASST 9 cut(s) 42, 72, 118, 126, 295, 306, 444, 450, 480
SfcI CTRYAG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 5 cut(s) 78, 94, 106, 200, 373
SsiI CCGC 1 cut(s) 233
SspMI CTAG 1 cut(s) 536
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 2 cut(s) 27, 86
TaaI ACNGT 2 cut(s) 264, 453
TaiI ACGT 2 cut(s) 295, 306
TaqI TCGA 1 cut(s) 546
TasI AATT 5 cut(s) 78, 94, 106, 200, 373
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 3 cut(s) 432, 467, 492
Tru1I TTAA 3 cut(s) 93, 240, 480
Tru9I TTAA 3 cut(s) 93, 240, 480
TscAI CASTG 1 cut(s) 442
TseI GCWGC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 24, 100
TspRI CASTG 1 cut(s) 442
Van91I CCANNNNNTGG 1 cut(s) 63
XapI RAATTY 2 cut(s) 106, 200
XspI CTAG 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.