Rh1BG157400

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000234
Physical Location & Seq
Forward (+)
25610815 .. 25613229
2415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG157400.1

Sequence Viewer

Length: 579 bp
ATGGAATCCATCGAACAGAAAAATCAAGAGACTCCACAAGGTCTTTACCAAAATGTGGGTATTAATGTCAGTCTCGGGTTTGGATTTCACCGTCAGAAAAACGACTATAAAGTTGTGAAGATTGTACACGGGGAAATTATGTACAAAGTTGAGGTCTACTCCCTTAGATTGAATTCATGGAGAGAACTTGGTGCAGTTCTCCCCATTTGGTCCTACTCTACATACCTAAACAAATCTGCAATACATGTCAATGGAGTTGTGTACTGGATGGTAAAGGAGAAAAACTCTGCAAGATCTTTCATACTTTCTTTTGATATGGACAATGAGGTTTTCCAAAAGATGGAACTCCCTGAGAAACTAGTCGGAGGGATTGGTTCTGTTAGTATCCAAGTGTTTGAGAAATCCCTTTCTTTGATACACTTGAGAGAAGATGAGGATAATCTTCTGTCGGGTTTGGATTCTGCCACGGGAGAAATGAGTATAAAGTTGCGAGGATTGTACACAGGACACGGCGCGGATTCTAAAGTTGAGGTTTACAACCTTGGATTGAAGGGTGCAGTTCCCTCCAACTGCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

192

Amino Acids

21.58

Weight (kDa)

6.21

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 23 - 141 1.3e-14 F-box associated beta propeller domain
FBA_3 PF08268 23 - 120 6.4e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18880 FvH4_2g02020 FvH4_2g02020 FvH4_2g37110 FvH4_6g33750 FvH4_6g33770 FvH4_6g34412 FvH4_7g08973
malus_domestica MD09G1191300.v1.1 MD09G1281000.v1.1 MD09G1281100.v1.1 MD09G1281200.v1.1 MD12G1050800.v1.1
prunus_persica Prupe.1G188300_v2.0.a1 Prupe.2G120700_v2.0.a1 Prupe.3G013300_v2.0.a1 Prupe.3G013500_v2.0.a1 Prupe.3G047100_v2.0.a1 Prupe.3G047200_v2.0.a1 Prupe.3G047300_v2.0.a1 Prupe.3G047400_v2.0.a1 Prupe.6G319100_v2.0.a1
pyrus_communis pycom09g18870 pycom11g17570 pycom12g04520 pycom14g04100
rosa_chinensis RchiOBHm_Chr1g0321721 RchiOBHm_Chr1g0321751 RchiOBHm_Chr1g0344471 RchiOBHm_Chr1g0344741 RchiOBHm_Chr1g0344891 RchiOBHm_Chr2g0143631 RchiOBHm_Chr2g0143641 RchiOBHm_Chr2g0144781 RchiOBHm_Chr3g0458821 RchiOBHm_Chr6g0245251 RchiOBHm_Chr6g0304681
rosa_laevigata RLG00000007681 RLG00000010222 RLG00000013320 RLG00000015313 RLG00000017431 RLG00000017439 RLG00000020055 RLG00000020056 RLG00000020112 RLG00000025133 RLG00000028872 RLG00000028881 RLG00000028884 RLG00000030407
rosa_multiflora Rmu_co8324891.1_g000001 Rmu_sc0000087.1_g000002 Rmu_sc0001288.1_g000009 Rmu_sc0001634.1_g000031 Rmu_sc0001942.1_g000032 Rmu_sc0003410.1_g000036 Rmu_sc0003909.1_g000002 Rmu_sc0004340.1_g000024 Rmu_sc0005308.1_g000008 Rmu_sc0005705.1_g000040 Rmu_sc0016560.1_g000002 Rmu_ssc0000167.1_g000005
rosa_roxburghii Rroxscaffold_2G00101580 Rroxscaffold_4G00309600 Rroxscaffold_4G00309710 Rroxscaffold_4G00327490 Rroxscaffold_5G00333360 Rroxscaffold_6G00420770 Rroxscaffold_7G00163600 Rroxscaffold_7G00215330
rosa_rugosa Rorug01G0174400 Rorug02G0213500 Rorug02G0384500 Rorug02G0384500 Rorug02G0384500 Rorug03G0032100 Rorug03G0301100 Rorug05G0513100
rosa_samantha Rh1AG045800 Rh1AG046600 Rh1AG191000 Rh1AG191200 Rh1AG192400 Rh1BG045100 Rh1BG157400 Rh1BG158200 Rh1CG048800 Rh1CG176300 Rh1CG177700 Rh1DG053100 Rh1DG055000 Rh1DG188800 Rh2AG180100 Rh2AG180200 Rh2AG436400 Rh2AG436500 Rh2AG441300 Rh2BG444000 Rh2BG444100 Rh2BG452000 Rh2CG422700 Rh2CG422800 Rh2CG428600 Rh2DG185900 Rh2DG186000 Rh2DG454300 Rh2DG454400 Rh2DG461700 Rh3AG089700 Rh3BG092600 Rh3CG092900 Rh3DG093600 Rh4AG005900 Rh4DG004900 Rh4DG010300 Rh4DG010400 Rh4DG230700 Rh6AG028300 Rh6AG445500 Rh6BG024500 Rh6BG456400 Rh6BG456500 Rh6CG022600 Rh6CG458300 Rh6CG458400 Rh6DG022600 Rh6DG445500
rosa_wichuraiana Rw1G004020 Rw1G004060 Rw1G004180 Rw1G015690 Rw1G015790 Rw2G014090 Rw2G035570 Rw2G035580 Rw2G036090 Rw3G007680 Rw6G002380 Rw6G038740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 55, 340
AccI GTMKAC 1 cut(s) 156
AccII CGCG 1 cut(s) 515
AciI CCGC 1 cut(s) 515
AcsI RAATTY 1 cut(s) 172
AfaI GTAC 4 cut(s) 126, 143, 263, 500
AfiI CCNNNNNNNGG 2 cut(s) 55, 340
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 2 cut(s) 172, 550
AhlI ACTAGT 1 cut(s) 358
Alw26I GTCTC 2 cut(s) 23, 77
Ama87I CYCGRG 1 cut(s) 74
ApoI RAATTY 1 cut(s) 172
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AseI ATTAAT 1 cut(s) 63
AspLEI GCGC 1 cut(s) 515
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 210
BccI CCATC 3 cut(s) 17, 262, 334
BceAI ACGGC 1 cut(s) 526
BciVI GTATCC 1 cut(s) 395
BcoDI GTCTC 2 cut(s) 23, 77
BcuI ACTAGT 1 cut(s) 358
BfaI CTAG 1 cut(s) 359
BfuI GTATCC 1 cut(s) 395
BglII AGATCT 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 210
BplI GAGNNNNNCTC 4 cut(s) 143, 175, 269, 301
BpuEI CTTGAG 1 cut(s) 442
BsaJI CCNNGG 2 cut(s) 465, 541
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 340
Bse1I ACTGG 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 465, 541
BseGI GGATG 1 cut(s) 273
BseLI CCNNNNNNNGG 2 cut(s) 55, 340
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 269
BsgI GTGCAG 3 cut(s) 213, 556, 576
Bsh1236I CGCG 1 cut(s) 515
BsiHKCI CYCGRG 1 cut(s) 74
BslI CCNNNNNNNGG 2 cut(s) 55, 340
BsmAI GTCTC 2 cut(s) 23, 77
BsoBI CYCGRG 1 cut(s) 74
Bsp1407I TGTACA 3 cut(s) 124, 141, 498
Bsp143I GATC 1 cut(s) 293
BspACI CCGC 1 cut(s) 515
BspCNI CTCAG 1 cut(s) 343
BspFNI CGCG 1 cut(s) 515
BsrGI TGTACA 3 cut(s) 124, 141, 498
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 465, 541
BssMI GATC 1 cut(s) 293
BssT1I CCWWGG 1 cut(s) 541
Bst4CI ACNGT 1 cut(s) 92
BstAUI TGTACA 3 cut(s) 124, 141, 498
BstDEI CTNAG 2 cut(s) 164, 351
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 1 cut(s) 273
BstFNI CGCG 1 cut(s) 515
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 1 cut(s) 296
BstMAI GTCTC 2 cut(s) 23, 77
BstMBI GATC 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 248
BstUI CGCG 1 cut(s) 515
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BsuI GTATCC 1 cut(s) 395
BtgI CCRYGG 1 cut(s) 465
BtsCI GGATG 1 cut(s) 273
CfoI GCGC 1 cut(s) 515
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 4 cut(s) 125, 142, 262, 499
CviAII CATG 3 cut(s) 177, 245, 576
CviQI GTAC 4 cut(s) 125, 142, 262, 499
DdeI CTNAG 2 cut(s) 164, 351
DpnI GATC 1 cut(s) 295
DpnII GATC 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 541
FaeI CATG 3 cut(s) 180, 248, 579
FaiI YATR 9 cut(s) 108, 140, 178, 223, 246, 302, 317, 482, 577
FatI CATG 3 cut(s) 176, 244, 575
FblI GTMKAC 1 cut(s) 156
FokI GGATG 1 cut(s) 280
FspBI CTAG 1 cut(s) 359
GlaI GCGC 1 cut(s) 514
HhaI GCGC 1 cut(s) 515
Hin1II CATG 3 cut(s) 180, 248, 579
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HinfI GANTC 4 cut(s) 5, 31, 458, 518
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 5 cut(s) 127, 157, 262, 501, 535
Hpy188I TCNGA 2 cut(s) 96, 365
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 5 cut(s) 127, 157, 262, 501, 535
HpyAV CCTTC 1 cut(s) 544
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 5 cut(s) 194, 239, 290, 557, 573
HpyF3I CTNAG 2 cut(s) 164, 351
Hsp92II CATG 3 cut(s) 180, 248, 579
HspAI GCGC 1 cut(s) 513
Kzo9I GATC 1 cut(s) 293
LpnPI CCDG 3 cut(s) 250, 363, 489
MaeI CTAG 1 cut(s) 359
MalI GATC 1 cut(s) 295
MboI GATC 1 cut(s) 293
MboII GAAGA 3 cut(s) 130, 434, 440
MflI RGATCY 1 cut(s) 293
MluCI AATT 2 cut(s) 135, 172
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 7 cut(s) 145, 319, 359, 427, 485, 523, 574
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 249
MvnI CGCG 1 cut(s) 515
NdeII GATC 1 cut(s) 293
NlaIII CATG 3 cut(s) 180, 248, 579
NspI RCATGY 1 cut(s) 248
PciI ACATGT 1 cut(s) 244
PfeI GAWTC 3 cut(s) 5, 458, 518
PflMI CCANNNNNTGG 2 cut(s) 55, 340
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PscI ACATGT 1 cut(s) 244
PshBI ATTAAT 1 cut(s) 63
PspPI GGNCC 1 cut(s) 210
PsuI RGATCY 1 cut(s) 293
RsaI GTAC 4 cut(s) 126, 143, 263, 500
RsaNI GTAC 4 cut(s) 125, 142, 262, 499
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 63
Sau3AI GATC 1 cut(s) 293
Sau96I GGNCC 1 cut(s) 210
SchI GAGTC 1 cut(s) 25
SetI ASST 6 cut(s) 43, 156, 228, 330, 534, 543
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
SpeI ACTAGT 1 cut(s) 358
Sse9I AATT 2 cut(s) 135, 172
SsiI CCGC 1 cut(s) 515
SspMI CTAG 1 cut(s) 359
StyI CCWWGG 1 cut(s) 541
TaaI ACNGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 135, 172
TatI WGTACW 4 cut(s) 124, 141, 261, 498
TfiI GAWTC 3 cut(s) 5, 458, 518
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 165, 289
Van91I CCANNNNNTGG 2 cut(s) 55, 340
VpaK11BI GGWCC 1 cut(s) 210
VspI ATTAAT 1 cut(s) 63
XapI RAATTY 1 cut(s) 172
XceI RCATGY 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 156
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.