pycom10g10210

Triosephosphate isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0009314
Physical Location & Seq
Reverse (-)
13496888 .. 13498202
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGGCGGTGGCCTCCACATCTCTCGCCTCCCAACTCTCCAGCCCTAAATCGCTCTCCTCTTACTCCGGCCTCCGTCCGTCGTGCTGCAAGCTCGAATTCTCTCACTCTCTCTCCGCCACCCAATCCCTCTTCCAGCACCTTCACTCCCACCTCCGCCTCTCCTCCTCCTCTCGCAAGGCCTCCAGAGGCGTCGTCGCCATGGCCGGCACCGGAAAGTTTTTTGTTGGTGGAAACTGGAAGTGTAATGGCACAAAAGACTCCATAAGAAAGCTAGTCGCTGACTTGAACAGCGCAAAATTGGAAGTGGATGTTGATGTTGTTGTAGCACCACCATTTCTTTACTTAGATCGATCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003674 GO:0003824 GO:0004807 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006066 GO:0006071 GO:0006081 GO:0006082 GO:0006090 GO:0006091 GO:0006094 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006642 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016043 GO:0016051 GO:0016052 GO:0016053 GO:0016310 GO:0016853 GO:0016860 GO:0016861 GO:0017144 GO:0018130 GO:0019318 GO:0019319 GO:0019359 GO:0019362 GO:0019363 GO:0019400 GO:0019405 GO:0019438 GO:0019439 GO:0019563 GO:0019637 GO:0019682 GO:0019693 GO:0019751 GO:0019752 GO:0022622 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044262 GO:0044270 GO:0044271 GO:0044275 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046164 GO:0046166 GO:0046174 GO:0046184 GO:0046364 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046486 GO:0046496 GO:0046700 GO:0046939 GO:0048046 GO:0048364 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0071840 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080022 GO:0090407 GO:0099402 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901615 GO:1901616
KEGG Pathways
Metabolic & Signaling
ko00010 ko00051 ko00562 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00051 map00562 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TIM

Protein Analysis

120

Amino Acids

12.75

Weight (kDa)

9.82

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIM PF00121 74 - 117 4.3e-07 Triosephosphate isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 3 cut(s) 5, 114, 154
AclWI GGATC 1 cut(s) 345
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 189
AgsI TTSAA 1 cut(s) 286
AluBI AGCT 2 cut(s) 91, 271
AluI AGCT 2 cut(s) 91, 271
AlwI GGATC 1 cut(s) 345
AoxI GGCC 4 cut(s) 9, 67, 177, 201
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 1 cut(s) 95
AspLEI GCGC 1 cut(s) 293
BanI GGYRCC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 71
BfaI CTAG 1 cut(s) 272
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 208
BpmI CTGGAG 2 cut(s) 22, 166
Bsa29I ATCGAT 1 cut(s) 349
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 198
BsaWI WCCGGW 1 cut(s) 209
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 128, 158
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 313
BseNI ACTGG 1 cut(s) 239
BseRI GAGGAG 4 cut(s) 46, 151, 154, 157
BseXI GCAGC 1 cut(s) 71
BshFI GGCC 4 cut(s) 11, 69, 179, 203
BshNI GGYRCC 1 cut(s) 206
BshVI ATCGAT 1 cut(s) 349
BsiSI CCGG 3 cut(s) 66, 204, 210
BsnI GGCC 4 cut(s) 11, 69, 179, 203
Bsp143I GATC 2 cut(s) 346, 350
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 3 cut(s) 5, 114, 154
BspANI GGCC 4 cut(s) 11, 69, 179, 203
BspDI ATCGAT 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 2 cut(s) 346, 350
BssNI GRCGYC 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 89, 205
BstDEI CTNAG 1 cut(s) 343
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 313
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 2 cut(s) 349, 353
BstMBI GATC 2 cut(s) 346, 350
BstV1I GCAGC 1 cut(s) 71
Bsu15I ATCGAT 1 cut(s) 349
BsuRI GGCC 4 cut(s) 11, 69, 179, 203
BsuTUI ATCGAT 1 cut(s) 349
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 89, 205
CfoI GCGC 1 cut(s) 293
Cfr10I RCCGGY 1 cut(s) 203
ClaI ATCGAT 1 cut(s) 349
CseI GACGC 1 cut(s) 178
CviAII CATG 1 cut(s) 199
CviJI RGCY 7 cut(s) 11, 42, 69, 91, 179, 203, 271
CviKI_1 RGCY 7 cut(s) 11, 42, 69, 91, 179, 203, 271
DdeI CTNAG 1 cut(s) 343
DpnI GATC 2 cut(s) 348, 352
DpnII GATC 2 cut(s) 346, 350
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
EciI GGCGGA 2 cut(s) 103, 143
Eco130I CCWWGG 1 cut(s) 198
Eco147I AGGCCT 1 cut(s) 179
EcoRI GAATTC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 1 cut(s) 202
FaiI YATR 2 cut(s) 200, 263
FatI CATG 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 1 cut(s) 272
GlaI GCGC 1 cut(s) 292
GluI GCNGC 1 cut(s) 85
GsuI CTGGAG 2 cut(s) 22, 166
HaeIII GGCC 4 cut(s) 11, 69, 179, 203
HapII CCGG 3 cut(s) 66, 204, 210
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 293
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 1 cut(s) 202
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HinfI GANTC 1 cut(s) 257
HpaII CCGG 3 cut(s) 66, 204, 210
Hpy188III TCNNGA 1 cut(s) 183
Hpy99I CGWCG 3 cut(s) 82, 194, 197
HpyAV CCTTC 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 87
HpyF3I CTNAG 1 cut(s) 343
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 1 cut(s) 202
HspAI GCGC 1 cut(s) 291
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Kzo9I GATC 2 cut(s) 346, 350
LpnPI CCDG 7 cut(s) 52, 79, 146, 196, 217, 220, 223
Lsp1109I GCAGC 1 cut(s) 71
MaeI CTAG 1 cut(s) 272
MalI GATC 2 cut(s) 348, 352
MboI GATC 2 cut(s) 346, 350
MboII GAAGA 1 cut(s) 121
MluCI AATT 2 cut(s) 95, 296
MlyI GAGTC 1 cut(s) 251
MroNI GCCGGC 1 cut(s) 203
MspI CCGG 3 cut(s) 66, 204, 210
NaeI GCCGGC 1 cut(s) 205
NcoI CCATGG 1 cut(s) 198
NdeII GATC 2 cut(s) 346, 350
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 1 cut(s) 208
PceI AGGCCT 1 cut(s) 179
PdiI GCCGGC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 208
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 2 cut(s) 346, 350
SchI GAGTC 1 cut(s) 251
SetI ASST 4 cut(s) 93, 141, 153, 273
Sse9I AATT 2 cut(s) 95, 296
SseBI AGGCCT 1 cut(s) 179
SsiI CCGC 3 cut(s) 5, 114, 154
SspMI CTAG 1 cut(s) 272
StuI AGGCCT 1 cut(s) 179
StyI CCWWGG 1 cut(s) 198
TaqI TCGA 2 cut(s) 93, 349
TasI AATT 2 cut(s) 95, 296
TseI GCWGC 1 cut(s) 84
TspGWI ACGGA 2 cut(s) 62, 66
XapI RAATTY 1 cut(s) 95
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.