Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011671

Physical Location & Seq

Genomic Coordinates Forward (+)

13611493 .. 13612254

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGACAAAGGCATATACCCAGCATAAACTTGACCTAGACATTCCCCGCAGAAACCCTTTTATAAATCCCCGCGTCTTCAGGACCTTGACCACACATCACAAAGCCCAATACCACTCTCTAACAGCAATGGTAAACCCGATGGTTTTCTTTTACATGACGATCGGAGGCCAGCCGGCCGGCCGAATCGTGATGGAGCTCTTCGCCGACACCACCCCCCGCACCGCGGAGAACTTCAGGGCTCTCTGCACCGGCGAGAAGGGCACAGGCCGCTCCGGCAAGCCCCTCCACTACAAGGGATCCGCCTTCCACCGCGTGATCCCCGGGTTCATGTGCCAGGGAGGTGACTTCACCGCCGGAAACGGCACCGGAGGAGAGTCGATCTACGGCGCCAAGTTCGCGGACGAGAACTTCCAGAAGAAGCACACCGGACCTGGAATATTATCCATGGCCAACGCGGGTCCCGGAACCAACGGATCTCAGTTCTTCATCTGCACAGCCAAGACCGAGTGGCTCGACGGCAAGCACGTGGTATTCGGGCAGGTGATCGAGGGGCTGGATGTGGTGAAGAACATCGAGAAGGTCGGATCTGGACAGGGAAGGACCTCGAAGCAGGTGGTTGTCGCCGACTGTGGCCAGCTATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

215

Amino Acids

23.23

Weight (kDa)

9.43

Isoelectric Point (pI)

22.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	50 - 211	1.1e-49	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16600 AT2G16600 AT2G21130 AT4G38740
fragaria_vesca	FvH4_2g01940 FvH4_2g01940
malus_domestica	MD10G1119700.v1.1
prunus_persica	Prupe.8G161100_v2.0.a1
pyrus_communis	pycom05g11090 pycom10g10310
rosa_chinensis	RchiOBHm_Chr6g0245141
rosa_laevigata	RLG00000015322
rosa_roxburghii	Rroxscaffold_7G00215430
rosa_rugosa	Rorug05G0512300
rosa_samantha	Rh6AG027100 Rh6BG023000 Rh6CG021700 Rh6DG021800
rosa_wichuraiana	Rw6G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
AarI	CACCTGC	2 cut(s)	529, 601
Acc36I	ACCTGC	2 cut(s)	529, 601
AccB1I	GGYRCC	2 cut(s)	362, 386
AccBSI	CCGCTC	1 cut(s)	270
AccII	CGCG	5 cut(s)	72, 224, 312, 398, 455
AclWI	GGATC	5 cut(s)	291, 304, 310, 481, 592
AcoI	YGGCCR	4 cut(s)	174, 178, 447, 631
AcuI	CTGAAG	2 cut(s)	61, 217
AcvI	CACGTG	1 cut(s)	526
AcyI	GRCGYC	1 cut(s)	387
AdeI	CACNNNGTG	1 cut(s)	313
AfiI	CCNNNNNNNGG	2 cut(s)	223, 292
AjnI	CCWGG	2 cut(s)	333, 430
AluBI	AGCT	2 cut(s)	196, 637
AluI	AGCT	2 cut(s)	196, 637
Alw21I	GWGCWC	1 cut(s)	198
AlwI	GGATC	5 cut(s)	291, 304, 310, 481, 592
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	6 cut(s)	166, 174, 178, 265, 447, 631
AspLEI	GCGC	1 cut(s)	389
AspS9I	GGNCC	4 cut(s)	81, 428, 458, 600
AsuC2I	CCSGG	3 cut(s)	321, 322, 462
AsuHPI	GGTGA	4 cut(s)	340, 353, 553, 574
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	4 cut(s)	81, 428, 458, 600
BaeGI	GKGCMC	1 cut(s)	263
BalI	TGGCCA	2 cut(s)	449, 633
BamHI	GGATCC	1 cut(s)	296
BanI	GGYRCC	2 cut(s)	362, 386
BanII	GRGCYC	2 cut(s)	198, 241
BbrPI	CACGTG	1 cut(s)	526
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	198
BccI	CCATC	2 cut(s)	133, 184
BceAI	ACGGC	3 cut(s)	376, 400, 532
BciT130I	CCWGG	2 cut(s)	335, 432
BcnI	CCSGG	3 cut(s)	321, 322, 462
BfaI	CTAG	2 cut(s)	35, 643
BfoI	RGCGCY	1 cut(s)	390
BfuAI	ACCTGC	2 cut(s)	529, 601
BglI	GCCNNNNNGGC	1 cut(s)	273
BisI	GCNGC	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	269
Bme1390I	CCNGG	5 cut(s)	321, 322, 335, 432, 462
Bme18I	GGWCC	4 cut(s)	81, 428, 458, 600
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	4 cut(s)	81, 428, 458, 600
BmiI	GGNNCC	6 cut(s)	298, 364, 388, 459, 460, 466
BmrFI	CCNGG	5 cut(s)	321, 322, 335, 432, 462
BpiI	GAAGAC	1 cut(s)	67
BpuMI	CCSGG	3 cut(s)	321, 322, 462
BsaAI	YACGTR	1 cut(s)	526
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	5 cut(s)	222, 319, 320, 334, 444
BsaWI	WCCGGW	2 cut(s)	365, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 292
Bse118I	RCCGGY	3 cut(s)	172, 176, 248
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	2 cut(s)	335, 432
BseDI	CCNNGG	5 cut(s)	222, 319, 320, 334, 444
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	2 cut(s)	223, 292
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	384
BseSI	GKGCMC	1 cut(s)	263
BseX3I	CGGCCG	2 cut(s)	174, 178
BseYI	CCCAGC	1 cut(s)	18
BsgI	GTGCAG	2 cut(s)	229, 475
Bsh1236I	CGCG	5 cut(s)	72, 224, 312, 398, 455
Bsh1285I	CGRYCG	3 cut(s)	162, 177, 181
BshFI	GGCC	6 cut(s)	168, 176, 180, 267, 449, 633
BshNI	GGYRCC	2 cut(s)	362, 386
BsiEI	CGRYCG	3 cut(s)	162, 177, 181
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	9 cut(s)	173, 177, 249, 273, 321, 354, 366, 426, 462
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	2 cut(s)	223, 292
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	6 cut(s)	168, 176, 180, 267, 449, 633
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	3 cut(s)	198, 241, 263
Bsp143I	GATC	7 cut(s)	159, 296, 315, 378, 473, 543, 584
Bsp19I	CCATGG	1 cut(s)	444
BspANI	GGCC	6 cut(s)	168, 176, 180, 267, 449, 633
BspCNI	CTCAG	1 cut(s)	490
BspFNI	CGCG	5 cut(s)	72, 224, 312, 398, 455
BspLI	GGNNCC	6 cut(s)	298, 364, 388, 459, 460, 466
BspMI	ACCTGC	2 cut(s)	529, 601
BspPI	GGATC	5 cut(s)	291, 304, 310, 481, 592
BspQI	GCTCTTC	1 cut(s)	203
BspT107I	GGYRCC	2 cut(s)	362, 386
BsrBI	CCGCTC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	132
BsrFI	RCCGGY	3 cut(s)	172, 176, 248
BssAI	RCCGGY	3 cut(s)	172, 176, 248
BssECI	CCNNGG	5 cut(s)	222, 319, 320, 334, 444
BssMI	GATC	7 cut(s)	159, 296, 315, 378, 473, 543, 584
BssNI	GRCGYC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	335, 432
Bst4CI	ACNGT	1 cut(s)	629
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	387
BstBAI	YACGTR	1 cut(s)	526
BstC8I	GCNNGC	6 cut(s)	170, 174, 178, 278, 521, 635
BstDEI	CTNAG	1 cut(s)	477
BstDSI	CCRYGG	2 cut(s)	222, 444
BstF5I	GGATG	1 cut(s)	562
BstFNI	CGCG	5 cut(s)	72, 224, 312, 398, 455
BstH2I	RGCGCY	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	7 cut(s)	162, 299, 318, 381, 476, 546, 587
BstMBI	GATC	7 cut(s)	159, 296, 315, 378, 473, 543, 584
BstMCI	CGRYCG	3 cut(s)	162, 177, 181
BstMWI	GCNNNNNNNGC	4 cut(s)	258, 267, 273, 395
BstNI	CCWGG	2 cut(s)	335, 432
BstSCI	CCNGG	5 cut(s)	319, 320, 333, 430, 460
BstSLI	GKGCMC	1 cut(s)	263
BstUI	CGCG	5 cut(s)	72, 224, 312, 398, 455
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	3 cut(s)	296, 473, 584
BstYI	RGATCY	3 cut(s)	296, 473, 584
BstZI	CGGCCG	2 cut(s)	174, 178
BsuRI	GGCC	6 cut(s)	168, 176, 180, 267, 449, 633
BtgI	CCRYGG	2 cut(s)	222, 444
BtsCI	GGATG	1 cut(s)	562
BveI	ACCTGC	2 cut(s)	529, 601
Cac8I	GCNNGC	6 cut(s)	170, 174, 178, 278, 521, 635
CfoI	GCGC	1 cut(s)	389
Cfr10I	RCCGGY	3 cut(s)	172, 176, 248
Cfr13I	GGNCC	4 cut(s)	81, 428, 458, 600
Cfr42I	CCGCGG	1 cut(s)	225
Cfr9I	CCCGGG	1 cut(s)	320
CseI	GACGC	1 cut(s)	61
CviAII	CATG	3 cut(s)	154, 328, 445
DdeI	CTNAG	1 cut(s)	477
DinI	GGCGCC	1 cut(s)	388
DpnI	GATC	7 cut(s)	161, 298, 317, 380, 475, 545, 586
DpnII	GATC	7 cut(s)	159, 296, 315, 378, 473, 543, 584
DraIII	CACNNNGTG	1 cut(s)	313
EaeI	YGGCCR	4 cut(s)	174, 178, 447, 631
EagI	CGGCCG	2 cut(s)	174, 178
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
EciI	GGCGGA	1 cut(s)	289
Ecl136II	GAGCTC	1 cut(s)	196
EclXI	CGGCCG	2 cut(s)	174, 178
Eco130I	CCWWGG	1 cut(s)	444
Eco24I	GRGCYC	2 cut(s)	198, 241
Eco47I	GGWCC	4 cut(s)	81, 428, 458, 600
Eco52I	CGGCCG	2 cut(s)	174, 178
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	2 cut(s)	61, 217
Eco72I	CACGTG	1 cut(s)	526
Eco88I	CYCGRG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	196
EcoO109I	RGGNCCY	3 cut(s)	81, 458, 600
EcoRII	CCWGG	2 cut(s)	333, 430
EcoT14I	CCWWGG	1 cut(s)	444
EcoT38I	GRGCYC	2 cut(s)	198, 241
EgeI	GGCGCC	1 cut(s)	388
EheI	GGCGCC	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	3 cut(s)	157, 331, 448
FaiI	YATR	7 cut(s)	13, 15, 24, 62, 155, 329, 446
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	3 cut(s)	153, 327, 444
FauI	CCCGC	4 cut(s)	53, 77, 224, 448
Fnu4HI	GCNGC	1 cut(s)	268
FokI	GGATG	1 cut(s)	569
FriOI	GRGCYC	2 cut(s)	198, 241
FseI	GGCCGGCC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	268
FspBI	CTAG	2 cut(s)	35, 643
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	1 cut(s)	268
GsaI	CCCAGC	1 cut(s)	22
HaeII	RGCGCY	1 cut(s)	390
HaeIII	GGCC	6 cut(s)	168, 176, 180, 267, 449, 633
HapII	CCGG	9 cut(s)	173, 177, 249, 273, 321, 354, 366, 426, 462
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	389
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	3 cut(s)	157, 331, 448
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HinfI	GANTC	2 cut(s)	183, 374
HpaII	CCGG	9 cut(s)	173, 177, 249, 273, 321, 354, 366, 426, 462
HphI	GGTGA	4 cut(s)	340, 353, 553, 574
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	164, 584
Hpy188III	TCNNGA	5 cut(s)	79, 187, 412, 574, 588
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	518
HpyAV	CCTTC	4 cut(s)	250, 313, 571, 591
HpyCH4III	ACNGT	1 cut(s)	629
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	2 cut(s)	246, 492
HpyF10VI	GCNNNNNNNGC	4 cut(s)	258, 267, 273, 395
HpyF3I	CTNAG	1 cut(s)	477
HpySE526I	ACGT	1 cut(s)	525
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	3 cut(s)	157, 331, 448
HspAI	GCGC	1 cut(s)	387
KasI	GGCGCC	1 cut(s)	386
KflI	GGGWCCC	1 cut(s)	458
KroI	GCCGGC	2 cut(s)	172, 176
KroNI	GCCGGC	2 cut(s)	174, 178
KspI	CCGCGG	1 cut(s)	225
Kzo9I	GATC	7 cut(s)	159, 296, 315, 378, 473, 543, 584
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	2 cut(s)	193, 275
MaeI	CTAG	2 cut(s)	35, 643
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	7 cut(s)	161, 298, 317, 380, 475, 545, 586
MbiI	CCGCTC	1 cut(s)	270
MboI	GATC	7 cut(s)	159, 296, 315, 378, 473, 543, 584
MboII	GAAGA	5 cut(s)	67, 190, 427, 475, 577
MflI	RGATCY	3 cut(s)	296, 473, 584
MhlI	GDGCHC	3 cut(s)	198, 241, 263
MlsI	TGGCCA	2 cut(s)	449, 633
MluNI	TGGCCA	2 cut(s)	449, 633
Mly113I	GGCGCC	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	562
MnlI	CCTC	6 cut(s)	158, 293, 332, 362, 541, 613
Mox20I	TGGCCA	2 cut(s)	449, 633
MroNI	GCCGGC	2 cut(s)	172, 176
MscI	TGGCCA	2 cut(s)	449, 633
Msp20I	TGGCCA	2 cut(s)	449, 633
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	9 cut(s)	173, 177, 249, 273, 321, 354, 366, 426, 462
MspR9I	CCNGG	5 cut(s)	321, 322, 335, 432, 462
MvaI	CCWGG	2 cut(s)	335, 432
MvnI	CGCG	5 cut(s)	72, 224, 312, 398, 455
MwoI	GCNNNNNNNGC	4 cut(s)	258, 267, 273, 395
NaeI	GCCGGC	2 cut(s)	174, 178
NarI	GGCGCC	1 cut(s)	387
NciI	CCSGG	3 cut(s)	321, 322, 462
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	7 cut(s)	159, 296, 315, 378, 473, 543, 584
NgoMIV	GCCGGC	2 cut(s)	172, 176
NlaIII	CATG	3 cut(s)	157, 331, 448
NlaIV	GGNNCC	6 cut(s)	298, 364, 388, 459, 460, 466
NmuCI	GTSAC	1 cut(s)	341
PaqCI	CACCTGC	2 cut(s)	529, 601
PciSI	GCTCTTC	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PdiI	GCCGGC	2 cut(s)	174, 178
PfeI	GAWTC	1 cut(s)	183
PfoI	TCCNGGA	1 cut(s)	460
PkrI	GCNGC	1 cut(s)	269
Ple19I	CGATCG	1 cut(s)	162
PleI	GAGTC	1 cut(s)	382
PluTI	GGCGCC	1 cut(s)	390
PmaCI	CACGTG	1 cut(s)	526
PmlI	CACGTG	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	382
Ppu21I	YACGTR	1 cut(s)	526
PpuMI	RGGWCCY	3 cut(s)	81, 458, 600
PsiI	TTATAA	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	198
Psp5II	RGGWCCY	3 cut(s)	81, 458, 600
Psp6I	CCWGG	2 cut(s)	333, 430
PspCI	CACGTG	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	2 cut(s)	333, 430
PspN4I	GGNNCC	6 cut(s)	298, 364, 388, 459, 460, 466
PspPI	GGNCC	4 cut(s)	81, 428, 458, 600
PspPPI	RGGWCCY	3 cut(s)	81, 458, 600
PsuI	RGATCY	3 cut(s)	296, 473, 584
PvuI	CGATCG	1 cut(s)	162
RigI	GGCCGGCC	1 cut(s)	180
SacI	GAGCTC	1 cut(s)	198
SacII	CCGCGG	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	203
SatI	GCNGC	1 cut(s)	268
Sau3AI	GATC	7 cut(s)	159, 296, 315, 378, 473, 543, 584
Sau96I	GGNCC	4 cut(s)	81, 428, 458, 600
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	5 cut(s)	321, 322, 335, 432, 462
SduI	GDGCHC	3 cut(s)	198, 241, 263
SfoI	GGCGCC	1 cut(s)	388
Sfr303I	CCGCGG	1 cut(s)	225
SgrAI	CRCCGGYG	1 cut(s)	248
SgrBI	CCGCGG	1 cut(s)	225
SinI	GGWCC	4 cut(s)	81, 428, 458, 600
SmaI	CCCGGG	1 cut(s)	322
SspDI	GGCGCC	1 cut(s)	386
SspI	AATATT	1 cut(s)	438
SspMI	CTAG	2 cut(s)	35, 643
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	5 cut(s)	319, 320, 333, 430, 460
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	629
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	5 cut(s)	377, 513, 546, 573, 605
TaqII	GACCGA	1 cut(s)	518
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	2 cut(s)	316, 475
TspGWI	ACGGA	1 cut(s)	486
TspMI	CCCGGG	1 cut(s)	320
VpaK11BI	GGWCC	4 cut(s)	81, 428, 458, 600
XmaI	CCCGGG	1 cut(s)	320
XspI	CTAG	2 cut(s)	35, 643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.