Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0014593

Physical Location & Seq

Genomic Coordinates Forward (+)

16309134 .. 16309813

Gene Structure 680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAGGTTTTGGGATGGGTTGGAGCCCCCTCGTCACGTGACTTCTATGTCGCAGCACGTGCTTTTGCCGACAACCGGAAAGAATTCAACTCCGCCTTTCCTCCATGGAATTGGGTTCCTTCTCCTCATCTCTCTCAGTTGCAGCAGCAGCAGCAGGGCTACTTGTCATTGGAGAGGATTTGCCTTCCCGGGTCAAGCAAGGAAGATGTTAATGAAGAGAATCACACTGGGGAAGAAAAGGCGTCCGAGCCCGTTGATAATGCCACTCTGGTTGAGACCAGTAGTCCTCAAGTATGTTACTACGACTTCCATATAGTCTACAGTGATTCATATCGGTTTCCCGTGCTGTATTTTCGCAGTTACCACATCGATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004839 GO:0006464 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0007154 GO:0008150 GO:0008152 GO:0008641 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0009991 GO:0010506 GO:0010508 GO:0010638 GO:0016239 GO:0016241 GO:0016567 GO:0016874 GO:0016877 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033043 GO:0033059 GO:0033554 GO:0036211 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0043473 GO:0043476 GO:0043482 GO:0043562 GO:0044087 GO:0044088 GO:0044089 GO:0044090 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051130 GO:0051704 GO:0051707 GO:0051716 GO:0061919 GO:0065007 GO:0070647 GO:0071496 GO:0071704 GO:0090549 GO:0098542 GO:1901564 GO:1902115 GO:1902117 GO:2000785 GO:2000786

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Autophagy_act_C

Protein Analysis

126

Amino Acids

14.4

Weight (kDa)

4.79

Isoelectric Point (pI)

69.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Autophagy_act_C	PF03987	22 - 122	1.5e-14	Autophagocytosis associated protein, active-site domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07525 AT3G07525
fragaria_vesca	FvH4_2g17490
malus_domestica	MD05G1153700.v1.1 MD10G1148000.v1.1
prunus_persica	Prupe.8G187100_v2.0.a1
pyrus_communis	pycom10g12810
rosa_chinensis	RchiOBHm_Chr6g0282211
rosa_laevigata	RLG00000012901
rosa_multiflora	Rmu_sc0011940.1_g000010 Rmu_sc0014549.1_g000006
rosa_roxburghii	Rroxscaffold_7G00186400
rosa_rugosa	Rorug06G0146200
rosa_samantha	Rh6AG259400 Rh6BG262700 Rh6CG261600
rosa_wichuraiana	Rw6G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	318
AciI	CCGC	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	83
AcvI	CACGTG	2 cut(s)	38, 59
AcyI	GRCGYC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	88
AhdI	GACNNNNNGTC	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	188
ApeKI	GCWGC	5 cut(s)	53, 142, 145, 148, 151
ApoI	RAATTY	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	83
AsuC2I	CCSGG	2 cut(s)	189, 190
AvaI	CYCGRG	1 cut(s)	188
BanII	GRGCYC	2 cut(s)	28, 252
BbrPI	CACGTG	2 cut(s)	38, 59
BbvI	GCAGC	5 cut(s)	65, 154, 157, 160, 163
BccI	CCATC	1 cut(s)	9
BcnI	CCSGG	2 cut(s)	189, 190
BcoDI	GTCTC	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	319
BisI	GCNGC	5 cut(s)	54, 143, 146, 149, 152
BlsI	GCNGC	5 cut(s)	55, 144, 147, 150, 153
Bme1390I	CCNGG	2 cut(s)	189, 190
BmeRI	GACNNNNNGTC	1 cut(s)	282
BmeT110I	CYCGRG	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	25, 117
BmrFI	CCNGG	2 cut(s)	189, 190
BmrI	ACTGGG	1 cut(s)	237
BmuI	ACTGGG	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	273
BpuMI	CCSGG	2 cut(s)	189, 190
Bsa29I	ATCGAT	1 cut(s)	369
BsaAI	YACGTR	2 cut(s)	38, 59
BsaBI	GATNNNNATC	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	104, 188
BsaWI	WCCGGW	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	2 cut(s)	232, 279
Bse8I	GATNNNNATC	1 cut(s)	330
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	104, 188
BseGI	GGATG	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	2 cut(s)	232, 279
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	5 cut(s)	65, 154, 157, 160, 163
BshVI	ATCGAT	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	76, 189
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	28, 252
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	25, 117
BspTNI	GGTCTC	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	232, 279
BssECI	CCNNGG	2 cut(s)	104, 188
BssNI	GRCGYC	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstBAI	YACGTR	2 cut(s)	38, 59
BstDEI	CTNAG	1 cut(s)	135
BstDSI	CCRYGG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 148, 151
BstSCI	CCNGG	2 cut(s)	187, 188
BstSFI	CTRYAG	1 cut(s)	319
BstV1I	GCAGC	5 cut(s)	65, 154, 157, 160, 163
BstXI	CCANNNNNNTGG	1 cut(s)	111
Bsu15I	ATCGAT	1 cut(s)	369
BsuTUI	ATCGAT	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	2 cut(s)	225, 328
Cfr9I	CCCGGG	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	369
CseI	GACGC	1 cut(s)	231
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	1 cut(s)	105
CviJI	RGCY	3 cut(s)	26, 159, 250
CviKI_1	RGCY	3 cut(s)	26, 159, 250
DdeI	CTNAG	1 cut(s)	135
DrdI	GACNNNNNNGTC	1 cut(s)	47
DriI	GACNNNNNGTC	1 cut(s)	282
DseDI	GACNNNNNNGTC	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	210
Eam1105I	GACNNNNNGTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	104
Eco24I	GRGCYC	2 cut(s)	28, 252
Eco31I	GGTCTC	1 cut(s)	269
Eco72I	CACGTG	2 cut(s)	38, 59
Eco88I	CYCGRG	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	104
EcoT38I	GRGCYC	2 cut(s)	28, 252
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	1 cut(s)	108
FaiI	YATR	8 cut(s)	48, 106, 295, 312, 314, 331, 374, 376
FatI	CATG	1 cut(s)	104
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	5 cut(s)	54, 143, 146, 149, 152
FokI	GGATG	1 cut(s)	27
FriOI	GRGCYC	2 cut(s)	28, 252
Fsp4HI	GCNGC	5 cut(s)	54, 143, 146, 149, 152
GluI	GCNGC	5 cut(s)	54, 143, 146, 149, 152
HapII	CCGG	2 cut(s)	76, 189
HgaI	GACGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	108
HinfI	GANTC	2 cut(s)	220, 326
HpaII	CCGG	2 cut(s)	76, 189
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	1 cut(s)	247
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	2 cut(s)	129, 194
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	2 cut(s)	37, 58
HpyCH4V	TGCA	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 148, 151
HpyF3I	CTNAG	1 cut(s)	135
HpySE526I	ACGT	2 cut(s)	37, 58
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	6 cut(s)	89, 140, 202, 213, 254, 292
Lsp1109I	GCAGC	5 cut(s)	65, 154, 157, 160, 163
MaeII	ACGT	2 cut(s)	37, 58
MaeIII	GTNAC	4 cut(s)	33, 38, 296, 359
MboII	GAAGA	3 cut(s)	215, 227, 245
MhlI	GDGCHC	2 cut(s)	28, 252
MluCI	AATT	2 cut(s)	83, 109
MnlI	CCTC	5 cut(s)	40, 111, 135, 168, 297
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	1 cut(s)	210
MspI	CCGG	2 cut(s)	76, 189
MspR9I	CCNGG	2 cut(s)	189, 190
MwoI	GCNNNNNNNGC	3 cut(s)	59, 148, 151
NciI	CCSGG	2 cut(s)	189, 190
NcoI	CCATGG	1 cut(s)	104
NlaIII	CATG	1 cut(s)	108
NlaIV	GGNNCC	2 cut(s)	25, 117
NmuCI	GTSAC	2 cut(s)	33, 38
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	220, 326
PkrI	GCNGC	5 cut(s)	55, 144, 147, 150, 153
PmaCI	CACGTG	2 cut(s)	38, 59
PmlI	CACGTG	2 cut(s)	38, 59
Ppu21I	YACGTR	2 cut(s)	38, 59
PspCI	CACGTG	2 cut(s)	38, 59
PspN4I	GGNNCC	2 cut(s)	25, 117
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	5 cut(s)	54, 143, 146, 149, 152
ScrFI	CCNGG	2 cut(s)	189, 190
SduI	GDGCHC	2 cut(s)	28, 252
SetI	ASST	3 cut(s)	9, 40, 61
SfcI	CTRYAG	1 cut(s)	319
SmaI	CCCGGG	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
Sse9I	AATT	2 cut(s)	83, 109
SsiI	CCGC	1 cut(s)	93
StyD4I	CCNGG	2 cut(s)	187, 188
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	2 cut(s)	40, 61
TaqI	TCGA	1 cut(s)	369
TasI	AATT	2 cut(s)	83, 109
TfiI	GAWTC	2 cut(s)	220, 326
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	2 cut(s)	232, 328
TseFI	GTSAC	2 cut(s)	33, 38
TseI	GCWGC	5 cut(s)	53, 142, 145, 148, 151
Tsp45I	GTSAC	2 cut(s)	33, 38
TspDTI	ATGAA	2 cut(s)	228, 318
TspMI	CCCGGG	1 cut(s)	188
TspRI	CASTG	2 cut(s)	232, 328
XapI	RAATTY	1 cut(s)	83
XmaI	CCCGGG	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	318
XmnI	GAANNNNTTC	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.