pycom10g12830

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013164
Physical Location & Seq
Forward (+)
16315450 .. 16318479
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1191 bp
ATGGCAGCAACGCAAGCCAAAACCCCTTCTCTTTGTTATTATGCTCGTCAACTTCACAACCATATTCCTGCATCATCCCTATCACTTGTTGGTAATAATCTTAAATCCAACCACCACAAGAAGCCCCTCAAATTCACCTGCAGATCCAGCGGCCAGGATGATTATTACATTGATGCTCCTGTTGAAATCGGTGATGGATTTTCCTTTAGTGGAGGAAAGTATTCTGATGGACCAAGTCCTTCTGATGAATGGTTTAAGCAAGGGAAGATAGTGAAAGCTTATGCTGCTTTTGGTTCCGGCGAGAAGGCAAAAGACCCGATTTTTGGACTCGCCATGGGTGCTGATTCTCAGGCCTCCACTGATGTTTTCAGATGGTTTTGCGTTGAATCCGGAAGTGCTGATAATCCTTCAGTTATATTAATTCATGGTTTTCCTTCTCAGGCATACTCTTATCGCAAAGTTCTTCCCATACTCTCAAAGGACTATCACGCGATTGCTTTTGATTGGCTCGGCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGATTTGACTACACTATGAACGAGTTTGTAGCATCCTTGGAGTCATTCATAAACGCAGTTACTGTTAACAAGGTCACGCTCGTTGTCCAGGGATACTTTGCGCCGGTTGTAGTTAAATACGCTAGCAGTCATCAGGAAAAGATTGACAACATAATACTCTTAAATCCTCCGCTAACAGAGAAGCATGCCAACCTTCCATCAACCTTGTCAATTTTCAGCAACTTTTTGTTGGGTGAAATATTTTCTCAGGATCCCTTGAGGGCTAGTGATAAAGCTTTGGAAAGCTCCGGACCTTACAAAATGAAAGAGGACGATGCTATGGTCTACAGAAATCCTTACCTCACATCTGGAGCATCCGGTTTTGCACTAAATGCAATTAGCAGGGCCATGAAGAAAGAGCTGAAGAAGTATGTGGGTGAAATGAAGACAATACTAACAGATGAAGACTGGAAAGTTCCGACCACAGTCTGTTGGGGCAAAAGAGACAGGTGGTTGAGTTATGATGGCGTTGAAGAATTCTGCAAGGATTCTAAGCATAAGCTTATTGAAATTCCTATGGCAGGCCATCACGTGCAGGAGGATCGCGGCGAAGAACTTGGGGAAGTGCTTAAGGGGATTATCAGAAGAAGCCGTTTTGGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

397

Amino Acids

44.1

Weight (kDa)

7.16

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 136 - 376 1.7e-22 alpha/beta hydrolase fold
Hydrolase_4 PF12146 137 - 372 1.2e-10 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 138 - 381 3.7e-09 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12830
fragaria_vesca FvH4_2g17500 FvH4_2g17500
malus_domestica MD10G1148300.v1.1
prunus_persica Prupe.8G187300_v2.0.a1 Prupe.8G187300_v2.0.a1 Prupe.8G187300_v2.0.a1
pyrus_communis pycom05g14810 pycom10g12830
rosa_chinensis RchiOBHm_Chr6g0282231
rosa_laevigata RLG00000012899
rosa_multiflora Rmu_sc0014549.1_g000002
rosa_roxburghii Rroxscaffold_7G00186380
rosa_rugosa Rorug06G0146500
rosa_samantha Rh6BG262900 Rh6CG261800 Rh6DG253800
rosa_wichuraiana Rw6G022460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 146
Acc36I ACCTGC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 870
AccII CGCG 2 cut(s) 491, 1131
AccIII TCCGGA 2 cut(s) 389, 833
AciI CCGC 3 cut(s) 150, 716, 1131
AclWI GGATC 4 cut(s) 138, 791, 804, 1134
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 3 cut(s) 131, 1061, 1095
AcuI CTGAAG 2 cut(s) 393, 968
AcvI CACGTG 1 cut(s) 1117
AfiI CCNNNNNNNGG 3 cut(s) 323, 545, 1106
AflII CTTAAG 1 cut(s) 1154
AgsI TTSAA 4 cut(s) 185, 386, 1058, 1094
AjnI CCWGG 2 cut(s) 153, 633
AluBI AGCT 5 cut(s) 278, 821, 831, 946, 1087
AluI AGCT 5 cut(s) 278, 821, 831, 946, 1087
Alw26I GTCTC 1 cut(s) 1023
AlwI GGATC 4 cut(s) 138, 791, 804, 1134
AlwNI CAGNNNCTG 1 cut(s) 608
Aor13HI TCCGGA 2 cut(s) 389, 833
AoxI GGCC 4 cut(s) 151, 351, 930, 1108
ApeKI GCWGC 2 cut(s) 5, 284
ApoI RAATTY 3 cut(s) 131, 1061, 1095
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AseI ATTAAT 1 cut(s) 419
Asp700I GAANNNNTTC 1 cut(s) 220
AspLEI GCGC 1 cut(s) 649
AspS9I GGNCC 3 cut(s) 230, 836, 930
AsuHPI GGTGA 4 cut(s) 127, 203, 791, 974
AsuNHI GCTAGC 1 cut(s) 668
AvaII GGWCC 2 cut(s) 230, 836
BamHI GGATCC 1 cut(s) 796
BbrPI CACGTG 1 cut(s) 1117
BbsI GAAGAC 2 cut(s) 977, 996
BbvI GCAGC 2 cut(s) 17, 271
BccI CCATC 6 cut(s) 188, 221, 366, 751, 1043, 1119
BceAI ACGGC 1 cut(s) 1161
BcgI CGANNNNNNTGC 2 cut(s) 1109, 1143
BciT130I CCWGG 2 cut(s) 155, 635
BciVI GTATCC 1 cut(s) 632
BcoDI GTCTC 1 cut(s) 1023
BfaI CTAG 2 cut(s) 669, 810
BfmI CTRYAG 2 cut(s) 139, 871
BfrI CTTAAG 1 cut(s) 1154
BfuAI ACCTGC 1 cut(s) 146
BfuI GTATCC 1 cut(s) 632
BisI GCNGC 4 cut(s) 6, 151, 285, 1132
BlsI GCNGC 4 cut(s) 7, 152, 286, 1133
Bme1390I CCNGG 2 cut(s) 155, 635
Bme18I GGWCC 2 cut(s) 230, 836
BmgT120I GGNCC 3 cut(s) 230, 836, 930
BmiI GGNNCC 2 cut(s) 295, 798
BmrFI CCNGG 2 cut(s) 155, 635
BmsI GCATC 5 cut(s) 80, 163, 587, 850, 908
BmtI GCTAGC 1 cut(s) 672
BoxI GACNNNNGTC 1 cut(s) 1010
BpiI GAAGAC 2 cut(s) 977, 996
BpmI CTGGAG 1 cut(s) 915
BpuEI CTTGAG 1 cut(s) 823
BsaAI YACGTR 1 cut(s) 1117
BsaJI CCNNGG 3 cut(s) 333, 582, 634
BsaWI WCCGGW 3 cut(s) 389, 833, 902
Bsc4I CCNNNNNNNGG 3 cut(s) 323, 545, 1106
Bse118I RCCGGY 1 cut(s) 649
Bse1I ACTGG 1 cut(s) 998
BseAI TCCGGA 2 cut(s) 389, 833
BseBI CCWGG 2 cut(s) 155, 635
BseDI CCNNGG 3 cut(s) 333, 582, 634
BseGI GGATG 4 cut(s) 74, 163, 578, 899
BseLI CCNNNNNNNGG 3 cut(s) 323, 545, 1106
BseMII CTCAG 3 cut(s) 362, 452, 806
BseNI ACTGG 1 cut(s) 998
BseXI GCAGC 2 cut(s) 17, 271
BsgI GTGCAG 1 cut(s) 1139
Bsh1236I CGCG 2 cut(s) 491, 1131
BshFI GGCC 4 cut(s) 153, 353, 932, 1110
BsiSI CCGG 5 cut(s) 297, 390, 650, 834, 903
BslI CCNNNNNNNGG 3 cut(s) 323, 545, 1106
BsmAI GTCTC 1 cut(s) 1023
BsnI GGCC 4 cut(s) 153, 353, 932, 1110
Bsp13I TCCGGA 2 cut(s) 389, 833
Bsp143I GATC 3 cut(s) 143, 796, 1126
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 3 cut(s) 150, 716, 1131
BspANI GGCC 4 cut(s) 153, 353, 932, 1110
BspCNI CTCAG 3 cut(s) 361, 451, 805
BspEI TCCGGA 2 cut(s) 389, 833
BspFNI CGCG 2 cut(s) 491, 1131
BspLI GGNNCC 2 cut(s) 295, 798
BspMAI CTGCAG 1 cut(s) 143
BspMI ACCTGC 1 cut(s) 146
BspOI GCTAGC 1 cut(s) 672
BspPI GGATC 4 cut(s) 138, 791, 804, 1134
BspTI CTTAAG 1 cut(s) 1154
BsrFI RCCGGY 1 cut(s) 649
BsrI ACTGG 1 cut(s) 998
BssAI RCCGGY 1 cut(s) 649
BssECI CCNNGG 3 cut(s) 333, 582, 634
BssMI GATC 3 cut(s) 143, 796, 1126
BssT1I CCWWGG 2 cut(s) 333, 582
Bst2UI CCWGG 2 cut(s) 155, 635
Bst4CI ACNGT 2 cut(s) 610, 1012
BstAFI CTTAAG 1 cut(s) 1154
BstAPI GCANNNNNTGC 1 cut(s) 917
BstBAI YACGTR 1 cut(s) 1117
BstC8I GCNNGC 4 cut(s) 15, 670, 732, 1108
BstDEI CTNAG 4 cut(s) 348, 438, 792, 1077
BstDSI CCRYGG 1 cut(s) 333
BstENI CCTNNNNNAGG 1 cut(s) 1104
BstF5I GGATG 4 cut(s) 74, 163, 578, 899
BstFNI CGCG 2 cut(s) 491, 1131
BstHHI GCGC 1 cut(s) 649
BstKTI GATC 3 cut(s) 146, 799, 1129
BstMAI GTCTC 1 cut(s) 1023
BstMBI GATC 3 cut(s) 143, 796, 1126
BstMWI GCNNNNNNNGC 5 cut(s) 14, 147, 284, 338, 917
BstNI CCWGG 2 cut(s) 155, 635
BstNSI RCATGY 1 cut(s) 734
BstPAI GACNNNNGTC 1 cut(s) 1010
BstSCI CCNGG 2 cut(s) 153, 633
BstSFI CTRYAG 2 cut(s) 139, 871
BstUI CGCG 2 cut(s) 491, 1131
BstV1I GCAGC 2 cut(s) 17, 271
BstV2I GAAGAC 2 cut(s) 977, 996
BstX2I RGATCY 2 cut(s) 143, 796
BstYI RGATCY 2 cut(s) 143, 796
BsuI GTATCC 1 cut(s) 632
BsuRI GGCC 4 cut(s) 153, 353, 932, 1110
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 4 cut(s) 74, 163, 578, 899
BtsIMutI CAGTG 1 cut(s) 357
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 4 cut(s) 15, 670, 732, 1108
CaiI CAGNNNCTG 1 cut(s) 608
CfoI GCGC 1 cut(s) 649
Cfr10I RCCGGY 1 cut(s) 649
Cfr13I GGNCC 3 cut(s) 230, 836, 930
CviAII CATG 4 cut(s) 334, 425, 731, 934
DdeI CTNAG 4 cut(s) 348, 438, 792, 1077
DpnI GATC 3 cut(s) 145, 798, 1128
DpnII GATC 3 cut(s) 143, 796, 1126
EaeI YGGCCR 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 333, 582
Eco147I AGGCCT 1 cut(s) 353
Eco47I GGWCC 2 cut(s) 230, 836
Eco57I CTGAAG 2 cut(s) 393, 968
Eco72I CACGTG 1 cut(s) 1117
EcoNI CCTNNNNNAGG 1 cut(s) 1104
EcoRI GAATTC 1 cut(s) 1061
EcoRII CCWGG 2 cut(s) 153, 633
EcoT14I CCWWGG 2 cut(s) 333, 582
ErhI CCWWGG 2 cut(s) 333, 582
FaeI CATG 4 cut(s) 337, 428, 734, 937
FatI CATG 4 cut(s) 333, 424, 730, 933
FblI GTMKAC 1 cut(s) 870
Fnu4HI GCNGC 4 cut(s) 6, 151, 285, 1132
FokI GGATG 4 cut(s) 61, 170, 565, 886
Fsp4HI GCNGC 4 cut(s) 6, 151, 285, 1132
FspBI CTAG 2 cut(s) 669, 810
GlaI GCGC 1 cut(s) 648
GluI GCNGC 4 cut(s) 6, 151, 285, 1132
GsuI CTGGAG 1 cut(s) 915
HaeIII GGCC 4 cut(s) 153, 353, 932, 1110
HapII CCGG 5 cut(s) 297, 390, 650, 834, 903
HhaI GCGC 1 cut(s) 649
Hin1II CATG 4 cut(s) 337, 428, 734, 937
Hin6I GCGC 1 cut(s) 647
HinP1I GCGC 1 cut(s) 647
HincII GTYRAC 2 cut(s) 50, 613
HindII GTYRAC 2 cut(s) 50, 613
HindIII AAGCTT 3 cut(s) 276, 819, 1085
HinfI GANTC 5 cut(s) 327, 344, 386, 587, 1073
HpaI GTTAAC 1 cut(s) 613
HpaII CCGG 5 cut(s) 297, 390, 650, 834, 903
HphI GGTGA 4 cut(s) 127, 203, 791, 974
Hpy166II GTNNAC 3 cut(s) 50, 613, 871
Hpy188I TCNGA 6 cut(s) 226, 244, 371, 526, 1005, 1169
Hpy188III TCNNGA 5 cut(s) 390, 680, 794, 834, 894
Hpy8I GTNNAC 3 cut(s) 50, 613, 871
HpyAV CCTTC 6 cut(s) 36, 249, 298, 417, 444, 749
HpyCH4III ACNGT 2 cut(s) 610, 1012
HpyCH4IV ACGT 1 cut(s) 1116
HpyCH4V TGCA 6 cut(s) 71, 141, 911, 920, 1068, 1120
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 147, 284, 338, 917
HpyF3I CTNAG 4 cut(s) 348, 438, 792, 1077
HpySE526I ACGT 1 cut(s) 1116
Hsp92II CATG 4 cut(s) 337, 428, 734, 937
HspAI GCGC 1 cut(s) 647
Kpn2I TCCGGA 2 cut(s) 389, 833
KspAI GTTAAC 1 cut(s) 613
Kzo9I GATC 3 cut(s) 143, 796, 1126
LmnI GCTCC 3 cut(s) 181, 836, 896
Lsp1109I GCAGC 2 cut(s) 17, 271
LweI GCATC 5 cut(s) 80, 163, 587, 850, 908
MaeI CTAG 2 cut(s) 669, 810
MaeII ACGT 1 cut(s) 1116
MaeIII GTNAC 2 cut(s) 604, 619
MalI GATC 3 cut(s) 145, 798, 1128
MboI GATC 3 cut(s) 143, 796, 1126
MboII GAAGA 9 cut(s) 277, 455, 949, 961, 982, 1001, 1070, 1148, 1182
MflI RGATCY 2 cut(s) 143, 796
MluCI AATT 6 cut(s) 131, 420, 756, 921, 1061, 1095
MlyI GAGTC 2 cut(s) 321, 596
MmeI TCCRAC 2 cut(s) 132, 1028
MnlI CCTC 9 cut(s) 137, 206, 364, 543, 723, 798, 847, 896, 1117
MroI TCCGGA 2 cut(s) 389, 833
MroXI GAANNNNTTC 1 cut(s) 220
MseI TTAA 8 cut(s) 102, 255, 419, 612, 660, 707, 1155, 1189
MspA1I CMGCKG 1 cut(s) 150
MspCI CTTAAG 1 cut(s) 1154
MspI CCGG 5 cut(s) 297, 390, 650, 834, 903
MspR9I CCNGG 2 cut(s) 155, 635
MvaI CCWGG 2 cut(s) 155, 635
MvnI CGCG 2 cut(s) 491, 1131
MwoI GCNNNNNNNGC 5 cut(s) 14, 147, 284, 338, 917
NcoI CCATGG 1 cut(s) 333
NdeII GATC 3 cut(s) 143, 796, 1126
NheI GCTAGC 1 cut(s) 668
NlaIII CATG 4 cut(s) 337, 428, 734, 937
NlaIV GGNNCC 2 cut(s) 295, 798
NmeAIII GCCGAG 1 cut(s) 489
NmuCI GTSAC 1 cut(s) 619
NspI RCATGY 1 cut(s) 734
PaeI GCATGC 1 cut(s) 734
PaqCI CACCTGC 1 cut(s) 146
PceI AGGCCT 1 cut(s) 353
PdmI GAANNNNTTC 1 cut(s) 220
PfeI GAWTC 3 cut(s) 344, 386, 1073
PflFI GACNNNGTC 1 cut(s) 234
PkrI GCNGC 4 cut(s) 7, 152, 286, 1133
PleI GAGTC 2 cut(s) 321, 595
PmaCI CACGTG 1 cut(s) 1117
PmlI CACGTG 1 cut(s) 1117
PpsI GAGTC 2 cut(s) 321, 595
Ppu21I YACGTR 1 cut(s) 1117
PshAI GACNNNNGTC 1 cut(s) 1010
PshBI ATTAAT 1 cut(s) 419
Psp6I CCWGG 2 cut(s) 153, 633
PspCI CACGTG 1 cut(s) 1117
PspGI CCWGG 2 cut(s) 153, 633
PspN4I GGNNCC 2 cut(s) 295, 798
PspPI GGNCC 3 cut(s) 230, 836, 930
PstI CTGCAG 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 608
PsuI RGATCY 2 cut(s) 143, 796
PsyI GACNNNGTC 1 cut(s) 234
SaqAI TTAA 8 cut(s) 102, 255, 419, 612, 660, 707, 1155, 1189
SatI GCNGC 4 cut(s) 6, 151, 285, 1132
Sau3AI GATC 3 cut(s) 143, 796, 1126
Sau96I GGNCC 3 cut(s) 230, 836, 930
SchI GAGTC 2 cut(s) 321, 596
ScrFI CCNGG 2 cut(s) 155, 635
SfaNI GCATC 5 cut(s) 80, 163, 587, 850, 908
SfcI CTRYAG 2 cut(s) 139, 871
SinI GGWCC 2 cut(s) 230, 836
SmlI CTYRAG 2 cut(s) 802, 1154
SmoI CTYRAG 2 cut(s) 802, 1154
SphI GCATGC 1 cut(s) 734
Sse9I AATT 6 cut(s) 131, 420, 756, 921, 1061, 1095
SseBI AGGCCT 1 cut(s) 353
SsiI CCGC 3 cut(s) 150, 716, 1131
SspI AATATT 1 cut(s) 786
SspMI CTAG 2 cut(s) 669, 810
StuI AGGCCT 1 cut(s) 353
StyD4I CCNGG 2 cut(s) 153, 633
StyI CCWWGG 2 cut(s) 333, 582
TaaI ACNGT 2 cut(s) 610, 1012
TaiI ACGT 1 cut(s) 1119
TasI AATT 6 cut(s) 131, 420, 756, 921, 1061, 1095
TauI GCSGC 2 cut(s) 153, 1134
TfiI GAWTC 3 cut(s) 344, 386, 1073
Tru1I TTAA 8 cut(s) 102, 255, 419, 612, 660, 707, 1155, 1189
Tru9I TTAA 8 cut(s) 102, 255, 419, 612, 660, 707, 1155, 1189
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 2 cut(s) 5, 284
Tsp45I GTSAC 1 cut(s) 619
TspDTI ATGAA 8 cut(s) 261, 413, 578, 583, 863, 950, 983, 1002
TspRI CASTG 1 cut(s) 364
Tth111I GACNNNGTC 1 cut(s) 234
Vha464I CTTAAG 1 cut(s) 1154
VpaK11BI GGWCC 2 cut(s) 230, 836
VspI ATTAAT 1 cut(s) 419
XagI CCTNNNNNAGG 1 cut(s) 1104
XapI RAATTY 3 cut(s) 131, 1061, 1095
XceI RCATGY 1 cut(s) 734
XmiI GTMKAC 1 cut(s) 870
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 2 cut(s) 669, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.