Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008680

Physical Location & Seq

Genomic Coordinates Forward (+)

17413636 .. 17416543

Gene Structure 2908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGATTATAATAATGACAATGAGCACTGGAATTGGAAAAGGAATAATCAGCGTGCCCAAAAGGACTCGAATCATGACGTGTCTGAATGCATGTGGAAGGGAGTGCCACAGAACGAAGAAGACATTTCCTACATGTTCGATGATGAAACAACACCAGTTAAGGCTTGTGGGGATTTGGCATATCATGTTAACTTTAGAGATAATAGGACCCAGGAACCAGAACCAGAAGAACAGTCTTTCTCACAAATAAAGAGGCGCCGGATGCTACAATTTGACACTCATGATTTAGATCCTTCCCTTTCATGTGACGAGTTGTCTTCTTCATTCTTGAATACAAGTGAGAAGGCAGATTCAATTGAAGAGGCTTTTTCTGAAGCGTCGCAATGGGTATCAGGGTTTGCAGGAAATCCATCTTCATCTGGCTTTGAGGGCCTGGATCCGTCACCTGATGAGTGGATTGCTGAATGCTTCAACTATACCGATATGCATTTCAGCCCTGATGAGTTGAATTTCTCAGGGGCATCGGATGTTCAACTTGACATCACAAAGCTCTGTGATCTCCAACCTGAGCATGAAGTGAATGTGGTTCAACAACGAGTTACCCAAACACCTCGAAATGTAATTTTTAAAGGTAGGAAGTCTTACATTCGGACTCCCACTAAGCTAGCTACTTCTGTGGCATATCCATTTGCCTTCATTAAACCCTCTGGCGCCCATGGAGATGTAACTCTGAAGGACATAAACCAGCGGATCCGCACTCCACCACCTTCAAAATCAAAGCAAAAGCAGGAAGACCCTGCTGCTTACCCCACTTCGGCCTTTTCAGGGAAGCCTGTCGTTGGAAAAACTAAAATCCGCACTGAGGGAGGGACAGGCAGCATTACAATTATGAGAACCAAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007140 GO:0007143 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009314 GO:0009555 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

33.99

Weight (kDa)

5.11

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48720 AT5G48720 AT5G48720 AT5G48720
fragaria_vesca	FvH4_2g18790 FvH4_2g18790 FvH4_2g18790 FvH4_2g18790
malus_domestica	MD05G1173900.v1.1 MD10G1161800.v1.1
prunus_persica	Prupe.8G201300_v2.0.a1 Prupe.8G201300_v2.0.a1
pyrus_communis	pycom05g16060 pycom10g13980
rosa_chinensis	RchiOBHm_Chr6g0284531
rosa_laevigata	RLG00000012740
rosa_roxburghii	Rroxscaffold_7G00184630
rosa_rugosa	Rorug06G0164000
rosa_samantha	Rh6AG277200 Rh6BG277100 Rh6CG279200 Rh6DG271600
rosa_wichuraiana	Rw6G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	9
AccB1I	GGYRCC	2 cut(s)	255, 710
AciI	CCGC	3 cut(s)	748, 754, 856
AclWI	GGATC	5 cut(s)	284, 431, 444, 745, 758
AcsI	RAATTY	1 cut(s)	508
AcuI	CTGAAG	2 cut(s)	393, 752
AcyI	GRCGYC	2 cut(s)	256, 711
AfiI	CCNNNNNNNGG	4 cut(s)	814, 825, 839, 862
AflIII	ACRYGT	2 cut(s)	78, 132
AgsI	TTSAA	8 cut(s)	331, 354, 359, 472, 508, 533, 590, 771
AhdI	GACNNNNNGTC	1 cut(s)	313
AjiI	CACGTC	1 cut(s)	79
AjnI	CCWGG	2 cut(s)	210, 432
AluBI	AGCT	3 cut(s)	550, 664, 668
AluI	AGCT	3 cut(s)	550, 664, 668
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	5 cut(s)	284, 431, 444, 745, 758
AoxI	GGCC	2 cut(s)	430, 816
ApeKI	GCWGC	2 cut(s)	800, 876
ApoI	RAATTY	1 cut(s)	508
AspLEI	GCGC	2 cut(s)	258, 713
AspS9I	GGNCC	2 cut(s)	207, 430
AsuHPI	GGTGA	1 cut(s)	435
AsuNHI	GCTAGC	1 cut(s)	664
AvaII	GGWCC	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	58
BamHI	GGATCC	2 cut(s)	436, 750
BanI	GGYRCC	2 cut(s)	255, 710
BbsI	GAAGAC	3 cut(s)	126, 309, 798
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	787, 888
BccI	CCATC	1 cut(s)	418
BciT130I	CCWGG	2 cut(s)	212, 434
BfaI	CTAG	1 cut(s)	665
BfoI	RGCGCY	2 cut(s)	259, 714
BisI	GCNGC	2 cut(s)	801, 877
BlsI	GCNGC	2 cut(s)	802, 878
Bme1390I	CCNGG	2 cut(s)	212, 434
Bme18I	GGWCC	1 cut(s)	207
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	207, 430
BmiI	GGNNCC	6 cut(s)	209, 216, 257, 438, 712, 752
BmrFI	CCNGG	2 cut(s)	212, 434
BmsI	GCATC	2 cut(s)	252, 530
BmtI	GCTAGC	1 cut(s)	668
BpiI	GAAGAC	3 cut(s)	126, 309, 798
Bpu10I	CCTNAGC	1 cut(s)	567
BsaBI	GATNNNNATC	1 cut(s)	288
BsaHI	GRCGYC	2 cut(s)	256, 711
BsaJI	CCNNGG	2 cut(s)	210, 715
Bsc4I	CCNNNNNNNGG	4 cut(s)	814, 825, 839, 862
Bse1I	ACTGG	2 cut(s)	32, 155
Bse3DI	GCAATG	1 cut(s)	389
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	212, 434
BseDI	CCNNGG	2 cut(s)	210, 715
BseGI	GGATG	2 cut(s)	267, 532
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	4 cut(s)	814, 825, 839, 862
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	3 cut(s)	528, 558, 852
BseNI	ACTGG	2 cut(s)	32, 155
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	787, 888
BshFI	GGCC	2 cut(s)	432, 818
BshNI	GGYRCC	2 cut(s)	255, 710
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	883
BslI	CCNNNNNNNGG	4 cut(s)	814, 825, 839, 862
BsmFI	GGGAC	1 cut(s)	883
BsmI	GAATGC	2 cut(s)	92, 470
BsnI	GGCC	2 cut(s)	432, 818
Bsp1286I	GDGCHC	2 cut(s)	27, 58
Bsp143I	GATC	4 cut(s)	289, 436, 556, 750
Bsp19I	CCATGG	1 cut(s)	715
BspACI	CCGC	3 cut(s)	748, 754, 856
BspANI	GGCC	2 cut(s)	432, 818
BspCNI	CTCAG	3 cut(s)	527, 559, 853
BspHI	TCATGA	2 cut(s)	73, 280
BspLI	GGNNCC	6 cut(s)	209, 216, 257, 438, 712, 752
BspOI	GCTAGC	1 cut(s)	668
BspPI	GGATC	5 cut(s)	284, 431, 444, 745, 758
BspT107I	GGYRCC	2 cut(s)	255, 710
BsrDI	GCAATG	1 cut(s)	389
BsrI	ACTGG	2 cut(s)	32, 155
BssECI	CCNNGG	2 cut(s)	210, 715
BssMI	GATC	4 cut(s)	289, 436, 556, 750
BssNI	GRCGYC	2 cut(s)	256, 711
BssT1I	CCWWGG	1 cut(s)	715
Bst2UI	CCWGG	2 cut(s)	212, 434
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	1 cut(s)	354
BstACI	GRCGYC	2 cut(s)	256, 711
BstC8I	GCNNGC	2 cut(s)	54, 666
BstDEI	CTNAG	4 cut(s)	514, 567, 660, 861
BstDSI	CCRYGG	1 cut(s)	715
BstF5I	GGATG	2 cut(s)	267, 532
BstH2I	RGCGCY	2 cut(s)	259, 714
BstHHI	GCGC	2 cut(s)	258, 713
BstKTI	GATC	4 cut(s)	292, 439, 559, 753
BstMBI	GATC	4 cut(s)	289, 436, 556, 750
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 429
BstNI	CCWGG	2 cut(s)	212, 434
BstNSI	RCATGY	2 cut(s)	94, 136
BstSCI	CCNGG	2 cut(s)	210, 432
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	2 cut(s)	787, 888
BstV2I	GAAGAC	3 cut(s)	126, 309, 798
BstX2I	RGATCY	3 cut(s)	289, 436, 750
BstYI	RGATCY	3 cut(s)	289, 436, 750
BsuRI	GGCC	2 cut(s)	432, 818
BtgI	CCRYGG	1 cut(s)	715
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	267, 532
BtsIMutI	CAGTG	2 cut(s)	25, 858
Cac8I	GCNNGC	2 cut(s)	54, 666
CciI	TCATGA	2 cut(s)	73, 280
CfoI	GCGC	2 cut(s)	258, 713
Cfr13I	GGNCC	2 cut(s)	207, 430
CseI	GACGC	1 cut(s)	366
CviAII	CATG	8 cut(s)	74, 91, 133, 185, 281, 303, 572, 716
DdeI	CTNAG	4 cut(s)	514, 567, 660, 861
DinI	GGCGCC	2 cut(s)	257, 712
DpnI	GATC	4 cut(s)	291, 438, 558, 752
DpnII	GATC	4 cut(s)	289, 436, 556, 750
DraI	TTTAAA	1 cut(s)	628
DriI	GACNNNNNGTC	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	354
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	715
Eco47I	GGWCC	1 cut(s)	207
Eco57I	CTGAAG	2 cut(s)	393, 752
EcoO109I	RGGNCCY	2 cut(s)	207, 430
EcoRII	CCWGG	2 cut(s)	210, 432
EcoT14I	CCWWGG	1 cut(s)	715
EcoT22I	ATGCAT	2 cut(s)	92, 489
EgeI	GGCGCC	2 cut(s)	257, 712
EheI	GGCGCC	2 cut(s)	257, 712
ErhI	CCWWGG	1 cut(s)	715
FaeI	CATG	8 cut(s)	77, 94, 136, 188, 284, 306, 575, 719
FaqI	GGGAC	1 cut(s)	883
FatI	CATG	8 cut(s)	73, 90, 132, 184, 280, 302, 571, 715
Fnu4HI	GCNGC	2 cut(s)	801, 877
FokI	GGATG	2 cut(s)	274, 539
Fsp4HI	GCNGC	2 cut(s)	801, 877
FspBI	CTAG	1 cut(s)	665
GlaI	GCGC	2 cut(s)	257, 712
GluI	GCNGC	2 cut(s)	801, 877
HaeII	RGCGCY	2 cut(s)	259, 714
HaeIII	GGCC	2 cut(s)	432, 818
HapII	CCGG	1 cut(s)	259
HgaI	GACGC	1 cut(s)	366
HhaI	GCGC	2 cut(s)	258, 713
Hin1I	GRCGYC	2 cut(s)	256, 711
Hin1II	CATG	8 cut(s)	77, 94, 136, 188, 284, 306, 575, 719
Hin6I	GCGC	2 cut(s)	256, 711
HinP1I	GCGC	2 cut(s)	256, 711
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	4 cut(s)	65, 70, 350, 652
HpaI	GTTAAC	1 cut(s)	190
HpaII	CCGG	1 cut(s)	259
HphI	GGTGA	1 cut(s)	435
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	5 cut(s)	85, 373, 526, 651, 732
Hpy188III	TCNNGA	3 cut(s)	74, 281, 328
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	382
HpyAV	CCTTC	6 cut(s)	91, 303, 337, 703, 727, 777
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	3 cut(s)	90, 401, 487
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 429
HpyF3I	CTNAG	4 cut(s)	514, 567, 660, 861
HpySE526I	ACGT	1 cut(s)	78
Hsp92I	GRCGYC	2 cut(s)	256, 711
Hsp92II	CATG	8 cut(s)	77, 94, 136, 188, 284, 306, 575, 719
HspAI	GCGC	2 cut(s)	256, 711
KasI	GGCGCC	2 cut(s)	255, 710
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	289, 436, 556, 750
Lsp1109I	GCAGC	2 cut(s)	787, 888
LweI	GCATC	2 cut(s)	252, 530
MaeI	CTAG	1 cut(s)	665
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	4 cut(s)	305, 441, 598, 724
MalI	GATC	4 cut(s)	291, 438, 558, 752
MboI	GATC	4 cut(s)	289, 436, 556, 750
MboII	GAAGA	8 cut(s)	128, 131, 239, 309, 312, 371, 405, 803
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	3 cut(s)	289, 436, 750
MhlI	GDGCHC	2 cut(s)	27, 58
MluCI	AATT	6 cut(s)	31, 269, 354, 508, 621, 885
Mly113I	GGCGCC	2 cut(s)	256, 711
MlyI	GAGTC	2 cut(s)	59, 646
MmeI	TCCRAC	2 cut(s)	586, 820
MnlI	CCTC	7 cut(s)	246, 355, 421, 621, 715, 856, 860
Mph1103I	ATGCAT	2 cut(s)	92, 489
MseI	TTAA	4 cut(s)	159, 189, 627, 699
MslI	CAYNNNNRTG	1 cut(s)	720
MspA1I	CMGCKG	1 cut(s)	748
MspI	CCGG	1 cut(s)	259
MspR9I	CCNGG	2 cut(s)	212, 434
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	2 cut(s)	92, 470
MvaI	CCWGG	2 cut(s)	212, 434
MwoI	GCNNNNNNNGC	2 cut(s)	262, 429
NarI	GGCGCC	2 cut(s)	256, 711
NcoI	CCATGG	1 cut(s)	715
NdeII	GATC	4 cut(s)	289, 436, 556, 750
NheI	GCTAGC	1 cut(s)	664
NlaIII	CATG	8 cut(s)	77, 94, 136, 188, 284, 306, 575, 719
NlaIV	GGNNCC	6 cut(s)	209, 216, 257, 438, 712, 752
NmuCI	GTSAC	2 cut(s)	305, 441
NsiI	ATGCAT	2 cut(s)	92, 489
NspI	RCATGY	2 cut(s)	94, 136
PagI	TCATGA	2 cut(s)	73, 280
PciI	ACATGT	1 cut(s)	132
PctI	GAATGC	2 cut(s)	92, 470
PfeI	GAWTC	2 cut(s)	70, 350
PkrI	GCNGC	2 cut(s)	802, 878
PleI	GAGTC	2 cut(s)	59, 646
PluTI	GGCGCC	2 cut(s)	259, 714
PpsI	GAGTC	2 cut(s)	59, 646
PpuMI	RGGWCCY	1 cut(s)	207
PscI	ACATGT	1 cut(s)	132
PsiI	TTATAA	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	210, 432
PspGI	CCWGG	2 cut(s)	210, 432
PspN4I	GGNNCC	6 cut(s)	209, 216, 257, 438, 712, 752
PspPI	GGNCC	2 cut(s)	207, 430
PspPPI	RGGWCCY	1 cut(s)	207
PsuI	RGATCY	3 cut(s)	289, 436, 750
RseI	CAYNNNNRTG	1 cut(s)	720
SaqAI	TTAA	4 cut(s)	159, 189, 627, 699
SatI	GCNGC	2 cut(s)	801, 877
Sau3AI	GATC	4 cut(s)	289, 436, 556, 750
Sau96I	GGNCC	2 cut(s)	207, 430
SchI	GAGTC	2 cut(s)	59, 646
ScrFI	CCNGG	2 cut(s)	212, 434
SduI	GDGCHC	2 cut(s)	27, 58
SetI	ASST	9 cut(s)	81, 448, 552, 568, 613, 634, 666, 670, 769
SfaNI	GCATC	2 cut(s)	252, 530
SfoI	GGCGCC	2 cut(s)	257, 712
SinI	GGWCC	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	720
Sse9I	AATT	6 cut(s)	31, 269, 354, 508, 621, 885
SsiI	CCGC	3 cut(s)	748, 754, 856
SspDI	GGCGCC	2 cut(s)	255, 710
SspMI	CTAG	1 cut(s)	665
StyD4I	CCNGG	2 cut(s)	210, 432
StyI	CCWWGG	1 cut(s)	715
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	68, 138, 613
TasI	AATT	6 cut(s)	31, 269, 354, 508, 621, 885
TfiI	GAWTC	2 cut(s)	70, 350
Tru1I	TTAA	4 cut(s)	159, 189, 627, 699
Tru9I	TTAA	4 cut(s)	159, 189, 627, 699
TscAI	CASTG	2 cut(s)	32, 865
TseFI	GTSAC	2 cut(s)	305, 441
TseI	GCWGC	2 cut(s)	800, 876
Tsp45I	GTSAC	2 cut(s)	305, 441
TspDTI	ATGAA	6 cut(s)	159, 291, 312, 405, 588, 685
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	2 cut(s)	32, 865
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	1 cut(s)	508
XceI	RCATGY	2 cut(s)	94, 136
XspI	CTAG	1 cut(s)	665
Zsp2I	ATGCAT	2 cut(s)	92, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.