Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012498

Physical Location & Seq

Genomic Coordinates Reverse (-)

17686349 .. 17687542

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATTTGTGGGGTCTTAGCTTCTGCTTCTGCTCCCACACAAGCACTTTCTTCCCCGTTTTCTAAACCCAGAAGCAGCAGCTTTCTCTCTGCATCGTCTTCAAGCTCTGGAAAGGTTCACACAGATTTGAAGCTCAAAAGCGACGGATTTTATGGAAGAAAAGGGTCTCAGAGAAGCATATTTCACTGCAGTAGCAGCGCAGGACCCGGTGGACCCGGATTTGGTGAGGGTGATAGCAGGAGTGTTCTGGATGCCTTTTTCTTGGGGAAAGCTCTGGGTGAAGCTATAAACGAGCGCATTGAGTCCGGTGTAGGCGAGTTTTTGAGCACGATTGGTAGGCTGCAAGCTGAGCAGCAGAAGCAAGTTGACGAGTTTCAGGAAGACGTACTGGAAAGAGCGCAAAAGGCCAAAGAGAGAGCAGCACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

14.99

Weight (kDa)

8.64

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF6825	PF20711	79 - 141	1e-29	Family of unknown function (DUF6825)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13200
fragaria_vesca	FvH4_2g19250
malus_domestica	MD05G1177500.v1.1 MD10G1165900.v1.1
prunus_persica	Prupe.8G204400_v2.0.a1
pyrus_communis	pycom05g16340 pycom05g16390 pycom10g14310
rosa_chinensis	RchiOBHm_Chr6g0285061
rosa_laevigata	RLG00000012681
rosa_multiflora	Rmu_sc0002478.1_g000008
rosa_roxburghii	Rroxscaffold_7G00183770 Rroxscaffold_7G00184070
rosa_rugosa	Rorug06G0170400
rosa_samantha	Rh6AG282100 Rh6BG282600 Rh6CG284600 Rh6DG277800
rosa_wichuraiana	Rw6G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	102, 130
AluBI	AGCT	7 cut(s)	20, 81, 105, 133, 272, 284, 347
AluI	AGCT	7 cut(s)	20, 81, 105, 133, 272, 284, 347
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	171
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	6 cut(s)	75, 78, 195, 340, 352, 419
AspLEI	GCGC	3 cut(s)	200, 297, 400
AspS9I	GGNCC	2 cut(s)	203, 212
AsuC2I	CCSGG	2 cut(s)	207, 216
AsuHPI	GGTGA	3 cut(s)	236, 242, 290
AvaII	GGWCC	2 cut(s)	203, 212
BbsI	GAAGAC	2 cut(s)	90, 387
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	5 cut(s)	87, 90, 207, 327, 364
BcnI	CCSGG	2 cut(s)	207, 216
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	427
BfmI	CTRYAG	1 cut(s)	187
BisI	GCNGC	6 cut(s)	76, 79, 196, 341, 353, 420
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	6 cut(s)	77, 80, 197, 342, 354, 421
Bme1390I	CCNGG	2 cut(s)	207, 216
Bme18I	GGWCC	2 cut(s)	203, 212
BmgT120I	GGNCC	2 cut(s)	203, 212
BmiI	GGNNCC	2 cut(s)	205, 214
BmrFI	CCNGG	2 cut(s)	207, 216
BmsI	GCATC	2 cut(s)	101, 241
BpiI	GAAGAC	2 cut(s)	90, 387
Bpu1102I	GCTNAGC	1 cut(s)	348
BpuMI	CCSGG	2 cut(s)	207, 216
BsaI	GGTCTC	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	393
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	2 cut(s)	182, 339
BseNI	ACTGG	1 cut(s)	393
BseXI	GCAGC	5 cut(s)	87, 90, 207, 327, 364
BshFI	GGCC	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	3 cut(s)	207, 216, 306
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	407
Bso31I	GGTCTC	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp1720I	GCTNAGC	1 cut(s)	348
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	2 cut(s)	181, 340
BspLI	GGNNCC	2 cut(s)	205, 214
BspMAI	CTGCAG	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	345, 424
BstDEI	CTNAG	3 cut(s)	16, 168, 348
BstF5I	GGATG	1 cut(s)	256
BstHHI	GCGC	3 cut(s)	200, 297, 400
BstMAI	GTCTC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	4 cut(s)	195, 349, 358, 404
BstSCI	CCNGG	2 cut(s)	205, 214
BstSFI	CTRYAG	1 cut(s)	187
BstV1I	GCAGC	5 cut(s)	87, 90, 207, 327, 364
BstV2I	GAAGAC	2 cut(s)	90, 387
BsuRI	GGCC	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	345, 424
CfoI	GCGC	3 cut(s)	200, 297, 400
Cfr13I	GGNCC	2 cut(s)	203, 212
Csp6I	GTAC	1 cut(s)	386
CviJI	RGCY	9 cut(s)	20, 81, 105, 133, 272, 284, 340, 347, 407
CviKI_1	RGCY	9 cut(s)	20, 81, 105, 133, 272, 284, 340, 347, 407
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	3 cut(s)	16, 168, 348
Eco31I	GGTCTC	1 cut(s)	171
Eco47I	GGWCC	2 cut(s)	203, 212
EcoO109I	RGGNCCY	1 cut(s)	203
FaiI	YATR	3 cut(s)	153, 179, 287
Fnu4HI	GCNGC	6 cut(s)	76, 79, 196, 341, 353, 420
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	6 cut(s)	76, 79, 196, 341, 353, 420
FspBI	CTAG	1 cut(s)	427
GlaI	GCGC	3 cut(s)	199, 296, 399
GluI	GCNGC	6 cut(s)	76, 79, 196, 341, 353, 420
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	3 cut(s)	207, 216, 306
HhaI	GCGC	3 cut(s)	200, 297, 400
Hin6I	GCGC	3 cut(s)	198, 295, 398
HinP1I	GCGC	3 cut(s)	198, 295, 398
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	3 cut(s)	207, 216, 306
HphI	GGTGA	3 cut(s)	236, 242, 290
Hpy166II	GTNNAC	3 cut(s)	118, 212, 367
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	3 cut(s)	108, 248, 377
Hpy8I	GTNNAC	3 cut(s)	118, 212, 367
Hpy99I	CGWCG	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	92, 189, 343
HpyF10VI	GCNNNNNNNGC	4 cut(s)	195, 349, 358, 404
HpyF3I	CTNAG	3 cut(s)	16, 168, 348
HpySE526I	ACGT	1 cut(s)	384
HspAI	GCGC	3 cut(s)	198, 295, 398
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	5 cut(s)	87, 90, 207, 327, 364
LweI	GCATC	2 cut(s)	101, 241
MaeI	CTAG	1 cut(s)	427
MaeII	ACGT	1 cut(s)	384
MboII	GAAGA	4 cut(s)	42, 90, 168, 392
MhlI	GDGCHC	1 cut(s)	329
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	1 cut(s)	220
MspI	CCGG	3 cut(s)	207, 216, 306
MspR9I	CCNGG	2 cut(s)	207, 216
MwoI	GCNNNNNNNGC	4 cut(s)	195, 349, 358, 404
NciI	CCSGG	2 cut(s)	207, 216
NlaIV	GGNNCC	2 cut(s)	205, 214
PkrI	GCNGC	6 cut(s)	77, 80, 197, 342, 354, 421
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PpuMI	RGGWCCY	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	205, 214
PspPI	GGNCC	2 cut(s)	203, 212
PspPPI	RGGWCCY	1 cut(s)	203
PstI	CTGCAG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
SatI	GCNGC	6 cut(s)	76, 79, 196, 341, 353, 420
Sau96I	GGNCC	2 cut(s)	203, 212
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	2 cut(s)	207, 216
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	9 cut(s)	22, 83, 107, 117, 135, 274, 286, 349, 387
SfaNI	GCATC	2 cut(s)	101, 241
SfcI	CTRYAG	1 cut(s)	187
SinI	GGWCC	2 cut(s)	203, 212
SspMI	CTAG	1 cut(s)	427
StyD4I	CCNGG	2 cut(s)	205, 214
TaiI	ACGT	1 cut(s)	387
TscAI	CASTG	1 cut(s)	191
TseI	GCWGC	6 cut(s)	75, 78, 195, 340, 352, 419
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	191
VpaK11BI	GGWCC	2 cut(s)	203, 212
XspI	CTAG	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.