pycom10g14840

Protein LOW PSII ACCUMULATION 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011140
Physical Location & Seq
Reverse (-)
18218015 .. 18219775
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 996 bp
ATGGCTTCTGTGGCAAATTCTCCCTTCTACATTCTCAAACCTCCAAATTCTCCCTTCTACATTCTCAAACCTCCAAACCACACTCACTACAAACTCAGCAGTGGAATCACAACCAGCCTCTGGTCATTCTCTTGTAGCAATGCACAATTTCTCGCTCTGCAGACCTCAAAGCACAAGTCTTCAACCATCAAATGCTTTGCAACTGATAAGCAAACTTCTTCTACTGAAATCAGCTCCACGGCCAGGATTAGGAGTGAAGTTCTCACTCCCTTCCGCTCCGTTCGAATGTTTTTCTACCTTGCTTTCATTGCAAGTGGTGGTTTAGGAGGATTAATAGCAACCACACAGTTAATTGCAGCACTAACAAATCCATCAAGAGCACTCGACGCCTCCGAAATTGCAAAGGGTCTTGGCATAGACCTTGGAGCAGTGTCTCTCTTTGCATTCTTGTATTTGAGGGAGAACAAGGCCAAGAATGCACAGATTGCTAGGCTCTCTCGAGAGGAAAATCTTTCAAATCTCAAGCTTCGTGTTTCTGAAAAGAAGGTCATTCCTGTTAGCTCTTTGAGAGGGATTGCTAGGCTTGTAATATGCGCTGGCCCTGCATCGTTCATCACAGAATCGTTCAATCGAAGTGAGCCTTTCACTGAAGGGCTTGTGGAAAGAGGAGTGCTTGTTGTGCCCTTGGCTACGGATGGAAACGTGCCTAGTCTTGAGTTTGAAGAAAGTGAAGAGGCTAAGGATATTACTACGAAGAGGAAAAGACTCTGGCAGCTAACTCCAATTTATGTTACTGAATGGACCAACTGGTTGGACGAACAAAAGAAGCTGGCCGGTGTCACCTCTGACTATCCCGTATATATATCTCTTCGCCTGGATGGTCGTGTTCGTGGCAGTGGCGTTGGTTACCCACCTTGGAATGCTTTCGTTGCACAGTTACCACCTGTAAAGGGAATGTGGTCTGGTCTTCTCGACGGGTTTGATGGAAGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3493

Protein Analysis

332

Amino Acids

36.4

Weight (kDa)

9.5

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3493 PF11998 79 - 155 4.3e-25 Low psii accumulation1 / Rep27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28740
fragaria_vesca FvH4_2g19970 FvH4_2g19970 FvH4_2g19970
malus_domestica MD05G1184000.v1.1 MD10G1171900.v1.1
prunus_persica Prupe.8G210100_v2.0.a1
pyrus_communis pycom05g16900 pycom10g14840
rosa_chinensis RchiOBHm_Chr6g0285631
rosa_laevigata RLG00000012620
rosa_multiflora Rmu_sc0001356.1_g000023
rosa_roxburghii Rroxscaffold_7G00182870
rosa_rugosa Rorug06G0176200 Rorug06G0176200
rosa_samantha Rh6AG287700 Rh6BG289100 Rh6CG290300 Rh6DG283000
rosa_wichuraiana Rw6G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 120
AccBSI CCGCTC 1 cut(s) 276
AciI CCGC 1 cut(s) 274
AcoI YGGCCR 2 cut(s) 240, 831
AcsI RAATTY 2 cut(s) 16, 46
AcuI CTGAAG 1 cut(s) 669
AcyI GRCGYC 1 cut(s) 387
AfiI CCNNNNNNNGG 4 cut(s) 120, 243, 249, 950
AgsI TTSAA 4 cut(s) 183, 516, 628, 722
AjnI CCWGG 2 cut(s) 242, 873
AluBI AGCT 5 cut(s) 234, 526, 561, 775, 829
AluI AGCT 5 cut(s) 234, 526, 561, 775, 829
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 1 cut(s) 438
AlwNI CAGNNNCTG 1 cut(s) 120
Ama87I CYCGRG 1 cut(s) 498
AoxI GGCC 4 cut(s) 240, 468, 598, 831
ApeKI GCWGC 2 cut(s) 356, 772
ApoI RAATTY 2 cut(s) 16, 46
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AseI ATTAAT 1 cut(s) 332
Asp700I GAANNNNTTC 1 cut(s) 923
AspLEI GCGC 1 cut(s) 596
AspS9I GGNCC 2 cut(s) 599, 801
AsuHPI GGTGA 1 cut(s) 832
AsuII TTCGAA 1 cut(s) 283
AvaI CYCGRG 1 cut(s) 498
AvaII GGWCC 1 cut(s) 801
BaeGI GKGCMC 1 cut(s) 684
BbsI GAAGAC 2 cut(s) 171, 959
Bbv12I GWGCWC 1 cut(s) 382
BbvI GCAGC 2 cut(s) 368, 784
BccI CCATC 5 cut(s) 194, 379, 689, 872, 977
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 2 cut(s) 244, 875
BcoDI GTCTC 1 cut(s) 438
BfaI CTAG 3 cut(s) 489, 579, 708
BfmI CTRYAG 1 cut(s) 158
BisI GCNGC 2 cut(s) 357, 773
BlsI GCNGC 2 cut(s) 358, 774
Bme1390I CCNGG 2 cut(s) 244, 875
Bme18I GGWCC 1 cut(s) 801
BmeT110I CYCGRG 1 cut(s) 498
BmgT120I GGNCC 2 cut(s) 599, 801
BmrFI CCNGG 2 cut(s) 244, 875
BmsI GCATC 1 cut(s) 614
BpiI GAAGAC 2 cut(s) 171, 959
Bpu10I CCTNAGC 1 cut(s) 738
Bpu14I TTCGAA 1 cut(s) 283
BpuEI CTTGAG 2 cut(s) 506, 734
BsaHI GRCGYC 1 cut(s) 387
BsaJI CCNNGG 4 cut(s) 237, 421, 684, 914
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 243, 249, 950
Bse118I RCCGGY 1 cut(s) 833
Bse1I ACTGG 1 cut(s) 812
Bse3DI GCAATG 2 cut(s) 145, 306
BseBI CCWGG 2 cut(s) 244, 875
BseDI CCNNGG 4 cut(s) 237, 421, 684, 914
BseGI GGATG 2 cut(s) 700, 883
BseLI CCNNNNNNNGG 4 cut(s) 120, 243, 249, 950
BseMI GCAATG 2 cut(s) 145, 306
BseMII CTCAG 1 cut(s) 109
BseNI ACTGG 1 cut(s) 812
BseRI GAGGAG 1 cut(s) 681
BseSI GKGCMC 1 cut(s) 684
BseXI GCAGC 2 cut(s) 368, 784
BshFI GGCC 4 cut(s) 242, 470, 600, 833
BsiHKAI GWGCWC 1 cut(s) 382
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 1 cut(s) 834
BslI CCNNNNNNNGG 4 cut(s) 120, 243, 249, 950
BsmAI GTCTC 1 cut(s) 438
BsmI GAATGC 3 cut(s) 443, 481, 925
BsnI GGCC 4 cut(s) 242, 470, 600, 833
BsoBI CYCGRG 1 cut(s) 498
Bsp119I TTCGAA 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 382, 684
BspACI CCGC 1 cut(s) 274
BspANI GGCC 4 cut(s) 242, 470, 600, 833
BspCNI CTCAG 1 cut(s) 108
BspMAI CTGCAG 1 cut(s) 162
BspT104I TTCGAA 1 cut(s) 283
BsrBI CCGCTC 1 cut(s) 276
BsrDI GCAATG 2 cut(s) 145, 306
BsrFI RCCGGY 1 cut(s) 833
BsrI ACTGG 1 cut(s) 812
BssAI RCCGGY 1 cut(s) 833
BssECI CCNNGG 4 cut(s) 237, 421, 684, 914
BssNI GRCGYC 1 cut(s) 387
BssT1I CCWWGG 3 cut(s) 421, 684, 914
Bst2UI CCWGG 2 cut(s) 244, 875
Bst4CI ACNGT 2 cut(s) 348, 936
Bst6I CTCTTC 4 cut(s) 726, 749, 873, 982
BstACI GRCGYC 1 cut(s) 387
BstAPI GCANNNNNTGC 1 cut(s) 485
BstBI TTCGAA 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 598, 831
BstDEI CTNAG 2 cut(s) 95, 738
BstDSI CCRYGG 1 cut(s) 237
BstEII GGTNACC 1 cut(s) 905
BstF5I GGATG 2 cut(s) 700, 883
BstHHI GCGC 1 cut(s) 596
BstMAI GTCTC 1 cut(s) 438
BstMWI GCNNNNNNNGC 8 cut(s) 11, 308, 386, 476, 485, 602, 679, 929
BstNI CCWGG 2 cut(s) 244, 875
BstPI GGTNACC 1 cut(s) 905
BstSCI CCNGG 2 cut(s) 242, 873
BstSFI CTRYAG 1 cut(s) 158
BstSLI GKGCMC 1 cut(s) 684
BstV1I GCAGC 2 cut(s) 368, 784
BstV2I GAAGAC 2 cut(s) 171, 959
BstXI CCANNNNNNTGG 1 cut(s) 811
BsuRI GGCC 4 cut(s) 242, 470, 600, 833
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 2 cut(s) 700, 883
BtsI GCAGTG 3 cut(s) 106, 435, 901
BtsIMutI CAGTG 4 cut(s) 106, 435, 645, 901
Cac8I GCNNGC 2 cut(s) 598, 831
CaiI CAGNNNCTG 1 cut(s) 120
CfoI GCGC 1 cut(s) 596
Cfr10I RCCGGY 1 cut(s) 833
Cfr13I GGNCC 2 cut(s) 599, 801
CseI GACGC 1 cut(s) 395
DdeI CTNAG 2 cut(s) 95, 738
EaeI YGGCCR 2 cut(s) 240, 831
Eam1104I CTCTTC 4 cut(s) 726, 749, 873, 982
EarI CTCTTC 4 cut(s) 726, 749, 873, 982
Eco130I CCWWGG 3 cut(s) 421, 684, 914
Eco47I GGWCC 1 cut(s) 801
Eco57I CTGAAG 1 cut(s) 669
Eco88I CYCGRG 1 cut(s) 498
Eco91I GGTNACC 1 cut(s) 905
EcoO65I GGTNACC 1 cut(s) 905
EcoRII CCWGG 2 cut(s) 242, 873
EcoT14I CCWWGG 3 cut(s) 421, 684, 914
ErhI CCWWGG 3 cut(s) 421, 684, 914
FaiI YATR 6 cut(s) 416, 592, 789, 859, 861, 863
FalI AAGNNNNNCTT 2 cut(s) 625, 657
Fnu4HI GCNGC 2 cut(s) 357, 773
FokI GGATG 2 cut(s) 707, 890
Fsp4HI GCNGC 2 cut(s) 357, 773
FspBI CTAG 3 cut(s) 489, 579, 708
GlaI GCGC 1 cut(s) 595
GluI GCNGC 2 cut(s) 357, 773
HaeIII GGCC 4 cut(s) 242, 470, 600, 833
HapII CCGG 1 cut(s) 834
HgaI GACGC 1 cut(s) 395
HhaI GCGC 1 cut(s) 596
Hin1I GRCGYC 1 cut(s) 387
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 3 cut(s) 105, 620, 765
HpaII CCGG 1 cut(s) 834
HphI GGTGA 1 cut(s) 832
Hpy188I TCNGA 3 cut(s) 394, 538, 847
Hpy188III TCNNGA 5 cut(s) 375, 498, 500, 713, 971
Hpy99I CGWCG 2 cut(s) 389, 977
HpyAV CCTTC 5 cut(s) 34, 64, 280, 538, 644
HpyCH4III ACNGT 2 cut(s) 348, 936
HpyCH4IV ACGT 1 cut(s) 702
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 308, 386, 476, 485, 602, 679, 929
HpyF3I CTNAG 2 cut(s) 95, 738
HpySE526I ACGT 1 cut(s) 702
Hsp92I GRCGYC 1 cut(s) 387
HspAI GCGC 1 cut(s) 594
LmnI GCTCC 3 cut(s) 239, 281, 425
Lsp1109I GCAGC 2 cut(s) 368, 784
LweI GCATC 1 cut(s) 614
MaeI CTAG 3 cut(s) 489, 579, 708
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 4 cut(s) 790, 838, 905, 936
MbiI CCGCTC 1 cut(s) 276
MboII GAAGA 7 cut(s) 171, 210, 734, 743, 766, 860, 959
MhlI GDGCHC 2 cut(s) 382, 684
MluCI AATT 6 cut(s) 16, 46, 146, 351, 396, 783
MlyI GAGTC 1 cut(s) 759
MmeI TCCRAC 1 cut(s) 792
MroXI GAANNNNTTC 1 cut(s) 923
MseI TTAA 3 cut(s) 332, 350, 994
MspI CCGG 1 cut(s) 834
MspR9I CCNGG 2 cut(s) 244, 875
Mva1269I GAATGC 3 cut(s) 443, 481, 925
MvaI CCWGG 2 cut(s) 244, 875
MwoI GCNNNNNNNGC 8 cut(s) 11, 308, 386, 476, 485, 602, 679, 929
NmuCI GTSAC 1 cut(s) 838
NspV TTCGAA 1 cut(s) 283
PaeR7I CTCGAG 1 cut(s) 498
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PctI GAATGC 3 cut(s) 443, 481, 925
PdmI GAANNNNTTC 1 cut(s) 923
PfeI GAWTC 2 cut(s) 105, 620
PflMI CCANNNNNTGG 1 cut(s) 120
PkrI GCNGC 2 cut(s) 358, 774
PleI GAGTC 1 cut(s) 759
PpsI GAGTC 1 cut(s) 759
PshBI ATTAAT 1 cut(s) 332
Psp6I CCWGG 2 cut(s) 242, 873
PspEI GGTNACC 1 cut(s) 905
PspGI CCWGG 2 cut(s) 242, 873
PspPI GGNCC 2 cut(s) 599, 801
PstI CTGCAG 1 cut(s) 162
PstNI CAGNNNCTG 1 cut(s) 120
SaqAI TTAA 3 cut(s) 332, 350, 994
SatI GCNGC 2 cut(s) 357, 773
Sau96I GGNCC 2 cut(s) 599, 801
SchI GAGTC 1 cut(s) 759
ScrFI CCNGG 2 cut(s) 244, 875
SduI GDGCHC 2 cut(s) 382, 684
SfaNI GCATC 1 cut(s) 614
SfcI CTRYAG 1 cut(s) 158
Sfr274I CTCGAG 1 cut(s) 498
SfuI TTCGAA 1 cut(s) 283
SinI GGWCC 1 cut(s) 801
SlaI CTCGAG 1 cut(s) 498
SmlI CTYRAG 3 cut(s) 498, 521, 713
SmoI CTYRAG 3 cut(s) 498, 521, 713
Sse9I AATT 6 cut(s) 16, 46, 146, 351, 396, 783
SsiI CCGC 1 cut(s) 274
SspMI CTAG 3 cut(s) 489, 579, 708
StyD4I CCNGG 2 cut(s) 242, 873
StyI CCWWGG 3 cut(s) 421, 684, 914
TaaI ACNGT 2 cut(s) 348, 936
TaiI ACGT 1 cut(s) 705
TaqI TCGA 5 cut(s) 283, 384, 499, 631, 972
TasI AATT 6 cut(s) 16, 46, 146, 351, 396, 783
TfiI GAWTC 2 cut(s) 105, 620
Tru1I TTAA 3 cut(s) 332, 350, 994
Tru9I TTAA 3 cut(s) 332, 350, 994
TscAI CASTG 4 cut(s) 106, 435, 652, 901
TseFI GTSAC 1 cut(s) 838
TseI GCWGC 2 cut(s) 356, 772
Tsp45I GTSAC 1 cut(s) 838
TspDTI ATGAA 2 cut(s) 295, 601
TspGWI ACGGA 2 cut(s) 268, 707
TspRI CASTG 4 cut(s) 106, 435, 652, 901
Van91I CCANNNNNTGG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 801
VspI ATTAAT 1 cut(s) 332
XapI RAATTY 2 cut(s) 16, 46
XhoI CTCGAG 1 cut(s) 498
XmnI GAANNNNTTC 1 cut(s) 923
XspI CTAG 3 cut(s) 489, 579, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.