Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002126

Physical Location & Seq

Genomic Coordinates Forward (+)

18888307 .. 18892115

Gene Structure 3809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCATTGTTTTTTATGAAGAAAGCTTCAACTGCTGAGTTGGATGCTTTCTATCCTGTTAGACCAGAATGCCAAGTTGACATCCCGAAGACACACTTTAGGCTCAGGGCGGGGAAAACTCTTAGTGAAAGAAGATGGCATGCTGCCTTCTCTGAAGATGGTCATTTGTATATAGCTAAAGTGCTTAGACGAATCCAACGAGGGGGTGTCCATCCTGCAATCAAAGGTGTAGTTTGGGAGTTCTTGTTAGGTTGCTTTGATCCAAATAGCACCTTCGATGAACGAAATCAGCTCAGGCAGTGCCGGAGGGAGCAGTATAACAGATTGAAAGCTGAATGCCAGGAGATGGTTCCAGTTATTGGCAGTGGAAAATTTCTTACAACACCAATCATCACGGATGATGGCCAACCCATAGAAGAATCAGCAAATGGCAATATCAGAGAGGCTTCAAACCATGCTTGTTCAGACAAGAAAGTGATTCAGTGGAAGCTTTTCTTGCATCAAATTGGTTTGGATGTTGCTCGCACGGATCGAACACTTGTCTTTTATGAGAGTCAAGCTAATCAGGCAAAACTTTGGGACATTCTTTCAGTTTATGCTTGGGTGGACAATGATATTGGTTATGTTCAAGGAATGAATGATATATGTTCGCCAATGGTAATTCTTATTGAAAATGAAGCAGATGCCTATTGGTGTTTTGAACGTACCATGCGAAGGCTGAGAGAGAATTTTAGGTGCAGTGCAAGTTCAATAGGGGTGCAATCTCAGCTGGGTACACTCTCCCAAGTAATCAGAACTATTGATCCTAAACTTCATCAGCACCTTGATGATCTAGATGGCGGGGAGTATTTATTTGCTTTTCGCATGCTAATGGTCCTGTTCCGAAGAGAGTTTTCCTTTGTGGATTCATTGTATCTTTGGGAGTTCCGAATGGTGGTGCTACACCACCAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

319

Amino Acids

36.98

Weight (kDa)

6.8

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	146 - 309	3.9e-35	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	190 - 306	5.4e-08	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20440 AT2G20440 AT2G20440 AT2G20440 AT4G28550 AT4G28550 AT4G28550
fragaria_vesca	FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100
malus_domestica	MD05G1194200.v1.1 MD10G1180900.v1.1
prunus_persica	Prupe.8G220800_v2.0.a1 Prupe.8G220800_v2.0.a1
pyrus_communis	pycom05g18150 pycom10g15670
rosa_chinensis	RchiOBHm_Chr6g0287601
rosa_laevigata	RLG00000012481
rosa_multiflora	Rmu_sc0004974.1_g000005 Rmu_sc0007029.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180980 Rroxscaffold_7G00181360
rosa_rugosa	Rorug06G0189600 Rorug06G0189700 Rorug06G0189800 Rorug06G0189900 Rorug06G0190000
rosa_samantha	Rh6AG300500 Rh6BG306000 Rh6CG303200 Rh6CG314600 Rh6DG297900
rosa_wichuraiana	Rw6G025920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	346, 359
AciI	CCGC	2 cut(s)	110, 840
AclWI	GGATC	3 cut(s)	254, 537, 797
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	371, 727
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	2 cut(s)	706, 775
AfiI	CCNNNNNNNGG	5 cut(s)	202, 346, 359, 714, 934
AgsI	TTSAA	7 cut(s)	30, 328, 450, 629, 671, 701, 750
AjnI	CCWGG	1 cut(s)	339
AloI	GAACNNNNNNTCC	2 cut(s)	787, 819
AluBI	AGCT	7 cut(s)	26, 176, 292, 332, 490, 560, 769
AluI	AGCT	7 cut(s)	26, 176, 292, 332, 490, 560, 769
AlwI	GGATC	3 cut(s)	254, 537, 797
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	2 cut(s)	371, 727
Asp700I	GAANNNNTTC	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	874
AvaII	GGWCC	1 cut(s)	874
BalI	TGGCCA	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	6 cut(s)	129, 152, 219, 340, 395, 830
BciT130I	CCWGG	1 cut(s)	341
BfaI	CTAG	1 cut(s)	833
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	1 cut(s)	874
BmgT120I	GGNCC	1 cut(s)	874
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	3 cut(s)	34, 508, 673
BpiI	GAAGAC	1 cut(s)	95
Bpu10I	CCTNAGC	2 cut(s)	104, 293
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	5 cut(s)	202, 346, 359, 714, 934
Bse1I	ACTGG	1 cut(s)	353
BseBI	CCWGG	1 cut(s)	341
BseGI	GGATG	5 cut(s)	49, 81, 211, 403, 520
BseLI	CCNNNNNNNGG	5 cut(s)	202, 346, 359, 714, 934
BseMII	CTCAG	5 cut(s)	27, 118, 307, 710, 779
BseNI	ACTGG	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	130
BseYI	CCCAGC	1 cut(s)	769
BsgI	GTGCAG	1 cut(s)	757
BshFI	GGCC	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	304
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	5 cut(s)	202, 346, 359, 714, 934
BsmFI	GGGAC	1 cut(s)	593
BsmI	GAATGC	2 cut(s)	74, 341
BsnI	GGCC	1 cut(s)	405
Bsp143I	GATC	4 cut(s)	259, 529, 802, 829
BspACI	CCGC	2 cut(s)	110, 840
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	5 cut(s)	28, 117, 306, 711, 778
BspLI	GGNNCC	1 cut(s)	351
BspPI	GGATC	3 cut(s)	254, 537, 797
BsrI	ACTGG	1 cut(s)	353
BssMI	GATC	4 cut(s)	259, 529, 802, 829
Bst2UI	CCWGG	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	880
BstC8I	GCNNGC	3 cut(s)	141, 523, 866
BstDEI	CTNAG	7 cut(s)	36, 104, 122, 185, 293, 719, 765
BstF5I	GGATG	5 cut(s)	49, 81, 211, 403, 520
BstKTI	GATC	4 cut(s)	262, 532, 805, 832
BstMBI	GATC	4 cut(s)	259, 529, 802, 829
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 496, 566, 766
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	2 cut(s)	143, 868
BstSCI	CCNGG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	405
BtsCI	GGATG	5 cut(s)	49, 81, 211, 403, 520
BtsI	GCAGTG	3 cut(s)	305, 370, 745
BtsIMutI	CAGTG	4 cut(s)	305, 370, 488, 745
Cac8I	GCNNGC	3 cut(s)	141, 523, 866
Cfr13I	GGNCC	1 cut(s)	874
Csp6I	GTAC	2 cut(s)	705, 774
CviAII	CATG	4 cut(s)	140, 455, 709, 865
CviQI	GTAC	2 cut(s)	705, 774
DdeI	CTNAG	7 cut(s)	36, 104, 122, 185, 293, 719, 765
DpnI	GATC	4 cut(s)	261, 531, 804, 831
DpnII	GATC	4 cut(s)	259, 529, 802, 829
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	880
EarI	CTCTTC	1 cut(s)	880
Eco47I	GGWCC	1 cut(s)	874
Eco57I	CTGAAG	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	339
FaeI	CATG	4 cut(s)	143, 458, 712, 868
FalI	AAGNNNNNCTT	4 cut(s)	80, 112, 479, 511
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	4 cut(s)	139, 454, 708, 864
FauI	CCCGC	2 cut(s)	103, 833
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	5 cut(s)	56, 68, 198, 410, 527
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	833
GluI	GCNGC	1 cut(s)	144
GsaI	CCCAGC	1 cut(s)	773
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	1 cut(s)	304
Hin1II	CATG	4 cut(s)	143, 458, 712, 868
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	2 cut(s)	24, 488
HinfI	GANTC	5 cut(s)	192, 419, 478, 553, 905
HpaII	CCGG	1 cut(s)	304
Hpy166II	GTNNAC	3 cut(s)	79, 607, 776
Hpy188I	TCNGA	6 cut(s)	154, 440, 466, 794, 884, 929
Hpy188III	TCNNGA	2 cut(s)	85, 833
Hpy8I	GTNNAC	3 cut(s)	79, 607, 776
HpyAV	CCTTC	3 cut(s)	157, 283, 708
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	5 cut(s)	218, 499, 738, 743, 760
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 496, 566, 766
HpyF3I	CTNAG	7 cut(s)	36, 104, 122, 185, 293, 719, 765
HpySE526I	ACGT	1 cut(s)	703
Hsp92II	CATG	4 cut(s)	143, 458, 712, 868
Kzo9I	GATC	4 cut(s)	259, 529, 802, 829
LmnI	GCTCC	1 cut(s)	310
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	3 cut(s)	34, 508, 673
MaeI	CTAG	1 cut(s)	833
MaeII	ACGT	1 cut(s)	703
MalI	GATC	4 cut(s)	261, 531, 804, 831
MboI	GATC	4 cut(s)	259, 529, 802, 829
MboII	GAAGA	6 cut(s)	31, 100, 144, 167, 428, 897
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	4 cut(s)	371, 504, 660, 727
MluNI	TGGCCA	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	562
MmeI	TCCRAC	2 cut(s)	21, 220
MnlI	CCTC	3 cut(s)	194, 300, 436
Mox20I	TGGCCA	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	405
MslI	CAYNNNNRTG	2 cut(s)	825, 869
Msp20I	TGGCCA	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	769
MspI	CCGG	1 cut(s)	304
MspR9I	CCNGG	1 cut(s)	341
Mva1269I	GAATGC	2 cut(s)	74, 341
MvaI	CCWGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	4 cut(s)	32, 496, 566, 766
NdeII	GATC	4 cut(s)	259, 529, 802, 829
NlaIII	CATG	4 cut(s)	143, 458, 712, 868
NlaIV	GGNNCC	1 cut(s)	351
NspI	RCATGY	2 cut(s)	143, 868
PaeI	GCATGC	2 cut(s)	143, 868
PcsI	WCGNNNNNNNCGW	3 cut(s)	196, 529, 709
PctI	GAATGC	2 cut(s)	74, 341
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	4 cut(s)	192, 419, 478, 905
PflMI	CCANNNNNTGG	2 cut(s)	346, 359
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	561
PpsI	GAGTC	1 cut(s)	561
Psp6I	CCWGG	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	769
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	874
PvuII	CAGCTG	1 cut(s)	769
RsaI	GTAC	2 cut(s)	706, 775
RsaNI	GTAC	2 cut(s)	705, 774
RseI	CAYNNNNRTG	2 cut(s)	825, 869
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	4 cut(s)	259, 529, 802, 829
Sau96I	GGNCC	1 cut(s)	874
SchI	GAGTC	1 cut(s)	562
ScrFI	CCNGG	1 cut(s)	341
SfaNI	GCATC	3 cut(s)	34, 508, 673
SinI	GGWCC	1 cut(s)	874
SmiMI	CAYNNNNRTG	2 cut(s)	825, 869
SphI	GCATGC	2 cut(s)	143, 868
Sse9I	AATT	4 cut(s)	371, 504, 660, 727
SsiI	CCGC	2 cut(s)	110, 840
SspMI	CTAG	1 cut(s)	833
StyD4I	CCNGG	1 cut(s)	339
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	2 cut(s)	276, 532
TasI	AATT	4 cut(s)	371, 504, 660, 727
TfiI	GAWTC	4 cut(s)	192, 419, 478, 905
TscAI	CASTG	4 cut(s)	305, 370, 488, 745
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	6 cut(s)	32, 294, 650, 690, 803, 897
TspGWI	ACGGA	2 cut(s)	410, 542
TspRI	CASTG	4 cut(s)	305, 370, 488, 745
Van91I	CCANNNNNTGG	2 cut(s)	346, 359
VpaK11BI	GGWCC	1 cut(s)	874
XapI	RAATTY	2 cut(s)	371, 727
XbaI	TCTAGA	1 cut(s)	832
XceI	RCATGY	2 cut(s)	143, 868
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	1 cut(s)	833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.