pycom10g15840

50S ribosomal protein L10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0016095
Physical Location & Seq
Reverse (-)
19051539 .. 19052249
711 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 711 bp
ATGGAAGCCACTCTCTTCAGCTTCCATTCCTCCAAACTCCCATCAACCCCCCTAACCCAAACCCAACCCAAATCCCTCCTGACCCGACCCGCCACAAACCCATTTCTCTCCCTCGCTCCCCGCCCCGCCCGCCACCACCACCGCCTCCCCACAATCCGCTCCGCCATCTCCCGCACCAAAAAGGAACAGACCGTCGAGACCATCAAAGAAAACCTCGAGAACTGCCACCTCATGGCCGGCATCCGCTACAAGGGCCTCACCGTCAAGCAATTCCAAGACCTTCGGAAAGTCCTGCCGGAAACCACCAAGCTCATTGTGGCGAAGAACACCCTGGTCTACAAGGCAATCGAGGGGACGCCGTGGGAGGCGCTGAAGCCGTGCATGACGGGGATGAACGCCTGGATGTTCGTCCACAGCGAGGAAATCCCGCCGGCCATTAAGCCCTACAGGGATTTCCAGAAGGAGAAGAAGCTCGACAGCAACGACTTCACCGGGGCGGTTTTCGAAGGGAAGTTTTACGGGCCTGGAGACTTTAAGCAGCTAGAGACAATGCCGACGAGGGCGGAGATTTACGCTAAGTTGCTTGGGACGTTGAATAGTCCCGCGTCGAGCTTGGTGGGGACGATTCAGGCGCCGGCGAGGGAGTTGGTCATGCTTTTGAAGGCATATGTGCAGAAATTGGAGGAGGAAGGCGGCGGCGGGGGGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L10

Protein Analysis

237

Amino Acids

26.38

Weight (kDa)

9.5

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L10 PF00466 58 - 152 5.6e-20 Ribosomal protein L10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13510
fragaria_vesca FvH4_2g21340
malus_domestica MD05G1196100.v1.1 MD10G1183400.v1.1
prunus_persica Prupe.8G222500_v2.0.a1
pyrus_communis pycom05g18310 pycom10g15840
rosa_chinensis RchiOBHm_Chr6g0287931
rosa_laevigata RLG00000012455
rosa_multiflora Rmu_sc0000042.1_g000003
rosa_roxburghii Rroxscaffold_7G00180660
rosa_rugosa Rorug06G0193500
rosa_samantha Rh6CG300800 Rh6DG301400
rosa_wichuraiana Rw6G026170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 631
AccB7I CCANNNNNTGG 1 cut(s) 232
AccBSI CCGCTC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 336
AccII CGCG 1 cut(s) 605
AcoI YGGCCR 2 cut(s) 234, 432
AcuI CTGAAG 1 cut(s) 392
AcyI GRCGYC 2 cut(s) 356, 632
AfiI CCNNNNNNNGG 3 cut(s) 232, 250, 418
AgsI TTSAA 2 cut(s) 595, 661
AjnI CCWGG 3 cut(s) 330, 398, 523
AluBI AGCT 5 cut(s) 21, 310, 472, 541, 612
AluI AGCT 5 cut(s) 21, 310, 472, 541, 612
Alw26I GTCTC 3 cut(s) 191, 522, 539
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 4 cut(s) 234, 253, 432, 521
ApeKI GCWGC 1 cut(s) 538
AspLEI GCGC 2 cut(s) 370, 634
AspS9I GGNCC 2 cut(s) 253, 521
AsuC2I CCSGG 1 cut(s) 493
AsuHPI GGTGA 2 cut(s) 250, 481
AsuII TTCGAA 1 cut(s) 504
AvaI CYCGRG 1 cut(s) 215
BanI GGYRCC 1 cut(s) 631
BbvI GCAGC 1 cut(s) 550
BccI CCATC 3 cut(s) 49, 173, 209
BceAI ACGGC 2 cut(s) 343, 361
BciT130I CCWGG 3 cut(s) 332, 400, 525
BcnI CCSGG 1 cut(s) 493
BcoDI GTCTC 3 cut(s) 191, 522, 539
BfaI CTAG 1 cut(s) 542
BfmI CTRYAG 1 cut(s) 445
BfoI RGCGCY 2 cut(s) 371, 635
BisI GCNGC 3 cut(s) 539, 694, 697
BlsI GCNGC 3 cut(s) 540, 695, 698
Bme1390I CCNGG 4 cut(s) 332, 400, 493, 525
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 253, 521
BmiI GGNNCC 1 cut(s) 633
BmrFI CCNGG 4 cut(s) 332, 400, 493, 525
BmsI GCATC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 546
Bpu14I TTCGAA 1 cut(s) 504
BpuMI CCSGG 1 cut(s) 493
BsaHI GRCGYC 2 cut(s) 356, 632
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 3 cut(s) 330, 359, 492
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 250, 418
Bse118I RCCGGY 3 cut(s) 236, 430, 634
BseBI CCWGG 3 cut(s) 332, 400, 525
BseDI CCNNGG 3 cut(s) 330, 359, 492
BseGI GGATG 3 cut(s) 240, 396, 408
BseLI CCNNNNNNNGG 3 cut(s) 232, 250, 418
BseRI GAGGAG 1 cut(s) 698
BseXI GCAGC 1 cut(s) 550
BsgI GTGCAG 1 cut(s) 692
Bsh1236I CGCG 1 cut(s) 605
BshFI GGCC 4 cut(s) 236, 255, 434, 523
BshNI GGYRCC 1 cut(s) 631
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 5 cut(s) 237, 296, 431, 492, 635
BslFI GGGAC 4 cut(s) 367, 585, 601, 634
BslI CCNNNNNNNGG 3 cut(s) 232, 250, 418
BsmAI GTCTC 3 cut(s) 191, 522, 539
BsmFI GGGAC 4 cut(s) 367, 585, 601, 634
BsnI GGCC 4 cut(s) 236, 255, 434, 523
Bso31I GGTCTC 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 504
BspANI GGCC 4 cut(s) 236, 255, 434, 523
BspFNI CGCG 1 cut(s) 605
BspLI GGNNCC 1 cut(s) 633
BspT104I TTCGAA 1 cut(s) 504
BspT107I GGYRCC 1 cut(s) 631
BspTNI GGTCTC 1 cut(s) 191
BsrBI CCGCTC 1 cut(s) 159
BsrFI RCCGGY 3 cut(s) 236, 430, 634
BssAI RCCGGY 3 cut(s) 236, 430, 634
BssECI CCNNGG 3 cut(s) 330, 359, 492
BssNI GRCGYC 2 cut(s) 356, 632
Bst2UI CCWGG 3 cut(s) 332, 400, 525
Bst4CI ACNGT 2 cut(s) 193, 262
Bst6I CTCTTC 1 cut(s) 20
BstACI GRCGYC 2 cut(s) 356, 632
BstBI TTCGAA 1 cut(s) 504
BstC8I GCNNGC 4 cut(s) 130, 238, 432, 636
BstDEI CTNAG 1 cut(s) 576
BstDSI CCRYGG 1 cut(s) 359
BstF5I GGATG 3 cut(s) 240, 396, 408
BstFNI CGCG 1 cut(s) 605
BstH2I RGCGCY 2 cut(s) 371, 635
BstHHI GCGC 2 cut(s) 370, 634
BstMAI GTCTC 3 cut(s) 191, 522, 539
BstMWI GCNNNNNNNGC 2 cut(s) 129, 252
BstNI CCWGG 3 cut(s) 332, 400, 525
BstSCI CCNGG 4 cut(s) 330, 398, 491, 523
BstSFI CTRYAG 1 cut(s) 445
BstUI CGCG 1 cut(s) 605
BstV1I GCAGC 1 cut(s) 550
BsuRI GGCC 4 cut(s) 236, 255, 434, 523
BtgI CCRYGG 1 cut(s) 359
BtsCI GGATG 3 cut(s) 240, 396, 408
Cac8I GCNNGC 4 cut(s) 130, 238, 432, 636
CfoI GCGC 2 cut(s) 370, 634
Cfr10I RCCGGY 3 cut(s) 236, 430, 634
Cfr13I GGNCC 2 cut(s) 253, 521
CseI GACGC 2 cut(s) 364, 594
CviAII CATG 3 cut(s) 232, 382, 652
DdeI CTNAG 1 cut(s) 576
DinI GGCGCC 1 cut(s) 633
EaeI YGGCCR 2 cut(s) 234, 432
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
EciI GGCGGA 2 cut(s) 151, 578
Eco31I GGTCTC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 392
Eco88I CYCGRG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 253
EcoRII CCWGG 3 cut(s) 330, 398, 523
EgeI GGCGCC 1 cut(s) 633
EheI GGCGCC 1 cut(s) 633
FaeI CATG 3 cut(s) 235, 385, 655
FaiI YATR 5 cut(s) 233, 383, 653, 667, 669
FaqI GGGAC 4 cut(s) 367, 585, 601, 634
FatI CATG 3 cut(s) 231, 381, 651
FauI CCCGC 8 cut(s) 97, 128, 133, 137, 179, 435, 610, 692
FauNDI CATATG 1 cut(s) 667
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 3 cut(s) 539, 694, 697
FokI GGATG 3 cut(s) 227, 403, 415
Fsp4HI GCNGC 3 cut(s) 539, 694, 697
FspBI CTAG 1 cut(s) 542
GlaI GCGC 2 cut(s) 369, 633
GluI GCNGC 3 cut(s) 539, 694, 697
GsuI CTGGAG 1 cut(s) 546
HaeII RGCGCY 2 cut(s) 371, 635
HaeIII GGCC 4 cut(s) 236, 255, 434, 523
HapII CCGG 5 cut(s) 237, 296, 431, 492, 635
HgaI GACGC 2 cut(s) 364, 594
HhaI GCGC 2 cut(s) 370, 634
Hin1I GRCGYC 2 cut(s) 356, 632
Hin1II CATG 3 cut(s) 235, 385, 655
Hin6I GCGC 2 cut(s) 368, 632
HinP1I GCGC 2 cut(s) 368, 632
HinfI GANTC 1 cut(s) 625
HpaII CCGG 5 cut(s) 237, 296, 431, 492, 635
HphI GGTGA 2 cut(s) 250, 481
Hpy166II GTNNAC 2 cut(s) 337, 412
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 4 cut(s) 79, 196, 217, 457
Hpy8I GTNNAC 2 cut(s) 337, 412
Hpy99I CGWCG 3 cut(s) 197, 559, 610
HpyAV CCTTC 5 cut(s) 290, 454, 500, 655, 683
HpyCH4III ACNGT 2 cut(s) 193, 262
HpyCH4IV ACGT 1 cut(s) 590
HpyCH4V TGCA 2 cut(s) 381, 673
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 252
HpyF3I CTNAG 1 cut(s) 576
HpySE526I ACGT 1 cut(s) 590
Hsp92I GRCGYC 2 cut(s) 356, 632
Hsp92II CATG 3 cut(s) 235, 385, 655
HspAI GCGC 2 cut(s) 368, 632
KasI GGCGCC 1 cut(s) 631
KroI GCCGGC 3 cut(s) 236, 430, 634
KroNI GCCGGC 3 cut(s) 238, 432, 636
LmnI GCTCC 2 cut(s) 121, 164
Lsp1109I GCAGC 1 cut(s) 550
LweI GCATC 1 cut(s) 249
MaeI CTAG 1 cut(s) 542
MaeII ACGT 1 cut(s) 590
MbiI CCGCTC 1 cut(s) 159
MboII GAAGA 3 cut(s) 7, 334, 478
MluCI AATT 2 cut(s) 269, 677
Mly113I GGCGCC 1 cut(s) 632
MreI CGCCGGCG 1 cut(s) 634
MroNI GCCGGC 3 cut(s) 236, 430, 634
MseI TTAA 2 cut(s) 438, 534
MspI CCGG 5 cut(s) 237, 296, 431, 492, 635
MspR9I CCNGG 4 cut(s) 332, 400, 493, 525
MvaI CCWGG 3 cut(s) 332, 400, 525
MvnI CGCG 1 cut(s) 605
MwoI GCNNNNNNNGC 2 cut(s) 129, 252
NaeI GCCGGC 3 cut(s) 238, 432, 636
NarI GGCGCC 1 cut(s) 632
NciI CCSGG 1 cut(s) 493
NdeI CATATG 1 cut(s) 667
NgoMIV GCCGGC 3 cut(s) 236, 430, 634
NlaIII CATG 3 cut(s) 235, 385, 655
NlaIV GGNNCC 1 cut(s) 633
NspV TTCGAA 1 cut(s) 504
PaeR7I CTCGAG 1 cut(s) 215
PcsI WCGNNNNNNNCGW 2 cut(s) 414, 480
PdiI GCCGGC 3 cut(s) 238, 432, 636
PfeI GAWTC 1 cut(s) 625
PflMI CCANNNNNTGG 1 cut(s) 232
PkrI GCNGC 3 cut(s) 540, 695, 698
PluTI GGCGCC 1 cut(s) 635
Psp6I CCWGG 3 cut(s) 330, 398, 523
PspGI CCWGG 3 cut(s) 330, 398, 523
PspN4I GGNNCC 1 cut(s) 633
PspPI GGNCC 2 cut(s) 253, 521
SaqAI TTAA 2 cut(s) 438, 534
SatI GCNGC 3 cut(s) 539, 694, 697
Sau96I GGNCC 2 cut(s) 253, 521
ScrFI CCNGG 4 cut(s) 332, 400, 493, 525
SetI ASST 9 cut(s) 23, 216, 231, 282, 312, 474, 543, 593, 614
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 445
SfoI GGCGCC 1 cut(s) 633
Sfr274I CTCGAG 1 cut(s) 215
SfuI TTCGAA 1 cut(s) 504
SgrAI CRCCGGYG 1 cut(s) 634
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 2 cut(s) 269, 677
SspDI GGCGCC 1 cut(s) 631
SspMI CTAG 1 cut(s) 542
StyD4I CCNGG 4 cut(s) 330, 398, 491, 523
TaaI ACNGT 2 cut(s) 193, 262
TaiI ACGT 1 cut(s) 593
TaqI TCGA 6 cut(s) 195, 216, 348, 474, 504, 608
TasI AATT 2 cut(s) 269, 677
TauI GCSGC 2 cut(s) 696, 699
TfiI GAWTC 1 cut(s) 625
Tru1I TTAA 2 cut(s) 438, 534
Tru9I TTAA 2 cut(s) 438, 534
TseI GCWGC 1 cut(s) 538
TspDTI ATGAA 1 cut(s) 407
Van91I CCANNNNNTGG 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XhoI CTCGAG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.