pycom10g16920

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0008696
Physical Location & Seq
Reverse (-)
20120960 .. 20124769
3810 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1608 bp
ATGACTGAAAGACGAGTGTGTATAGGCCCATTTTATTATATTGGGTCTTCCAAGCCCACTCCAGCCGCCCACTTTGACATCCCAACACACAAAATCTTCTTCTCCGAGACTTCAACTGCAAGTCTGCACTCTCAGTCGGAGATCGGAGTCCAAAACGTACAGAGAATCATGGCTGGCAAAGGAAGGAAGAGAGGGAGGGCTTGCGTGGTGGTGCTGGGCGACATTGGGCGGAGCCCCCGTATGCAGTATCATGCTCTTTCGCTTGCCCGGCAGGCGTCTCTGGAGGTAGATATTGTTGCATATGGAGGTTCCGAACCCCATTCTGCTGTGCTGGAGCATCAGTCTATTCACATACACAAAATGCAGCAGTGGCCGACATTTTCGCGTGGCCTCCCCAGTATACTTAAACCCTTCGTGCTTTTGATCAAAGCAGTGACTCAGTTTTTAATGCTCCTGTGGTTTCTTTGCGTTAAGATACCCGCTCCCGATGTATTTCTGGTTCAGAATCCACCTTCTGTTCCGACCTTAGTGGCTGTAAAATGGGCAAGCTGGTTTAGGAAATCTGCCTTTATTGTTGACTGGCATAATTTTGGATATACTTTACTGGCATTGTCTCTTGGAAGAAGTAGTCAATTTGTGGCAATATACCGTTGGTTTGAGAGGCATTTCGGGAAGATGGCAGATGGTTCCCTATGTGTAACGAGGGCAATGCAACATGAATTGGCTCAAAATTGGGGGATTAAAGCCACAGTTCTATATGATCAGCCTCCTGAGTTTTTCCAACCAGCTTCACTCGAAGAAAAACATAAGTTGTTCTGCAGATTAGATAAAAATCTAAGGCAGCCTCTTGGTGTTCAAGATTGCACCAGCACTGAAACAGGGGAAGAGAATACAGACATAAATGAGACTCTGTTTACCACTTTCGTTGGTACTGACGTTACTTCAAAGCCAAACAGGCCGGCACTCATAGTTAGCAGTACAAGCTGGACTCCTGATGAAGATTTTGAAATTCTCTTGGAAGCAGCTATCATGTATGATAGGCGTGTTGCTGCAATTTTAAATGAAGATGATTCTACGAAAGAAGAGGTTCTTTGGAAGGAAATCCATAGTGGGAAGCAATACTTGTACCCTAGGCTGTTATTTGTCATTACTGGTAAAGGGCCTGAAAAACAAAAATATGAAGTAAAAATTAGCCGATTACACCTCAAACGCGTGGCATTTCGTACTATGTGGTTGTCTGCTGAGGACTATCCATTGCTTCTTGGATCAGCAGATCTTGGTGTATGCTTGCACACATCCTCATCAGGGTTGGATCTTCCCATGAAGGTCGTGGACATGTTTGGTTGTGGACTGCCAGTTTGTGCTGTTTCCTACTCATGCATCAAGGAACTAGTGCAAGTTGAGAAAAATGGCCTTCTCTTTTCATCATCTTCAGAGCTAGCTGATGAACTTTTGATGCTGTTTAAGGGTTTTCCAGATGCATGTGATTCGTTGAAGGTTCTCAGGAATGGTGCATTGGAAATGGCTTCATCTGGGAGGTGGGCTACTGAGTGGGAAGAGCATGCCAAAGCATTAATACTAGAGGTTATCTCTAAAAACTCAGATTGA

Protein Analysis

536

Amino Acids

60.12

Weight (kDa)

6.97

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_trans_4_4 PF13579 90 - 249 1.9e-09 Glycosyl transferase 4-like domain
Glyco_transf_4 PF13439 91 - 249 2.1e-07 Glycosyltransferase Family 4
Glycos_transf_1 PF00534 374 - 484 1.3e-08 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 378 - 488 2.2e-09 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 482
AccI GTMKAC 1 cut(s) 400
AccII CGCG 2 cut(s) 385, 1212
AciI CCGC 3 cut(s) 66, 229, 480
AclWI GGATC 2 cut(s) 1273, 1320
AcoI YGGCCR 1 cut(s) 371
AcsI RAATTY 1 cut(s) 1008
AcuI CTGAAG 1 cut(s) 1416
AcyI GRCGYC 1 cut(s) 275
AfaI GTAC 5 cut(s) 159, 931, 979, 1127, 1225
AfiI CCNNNNNNNGG 1 cut(s) 1305
AflIII ACRYGT 2 cut(s) 1210, 1335
AgsI TTSAA 5 cut(s) 114, 857, 945, 1007, 1495
AhlI ACTAGT 1 cut(s) 1390
AjuI GAANNNNNNNTTGG 2 cut(s) 1499, 1531
AluBI AGCT 6 cut(s) 549, 788, 984, 1025, 1438, 1442
AluI AGCT 6 cut(s) 549, 788, 984, 1025, 1438, 1442
Alw26I GTCTC 4 cut(s) 101, 282, 618, 899
AlwI GGATC 2 cut(s) 1273, 1320
AoxI GGCC 6 cut(s) 25, 371, 388, 956, 1160, 1411
ApeKI GCWGC 4 cut(s) 364, 841, 1022, 1049
ApoI RAATTY 1 cut(s) 1008
ArsI GACNNNNNNTTYG 2 cut(s) 1341, 1373
AseI ATTAAT 1 cut(s) 1574
Asp700I GAANNNNTTC 1 cut(s) 1086
AspA2I CCTAGG 1 cut(s) 1130
AspS9I GGNCC 2 cut(s) 26, 1160
AsuC2I CCSGG 1 cut(s) 268
AsuNHI GCTAGC 1 cut(s) 1438
AvrII CCTAGG 1 cut(s) 1130
BaeI ACNNNNGTAYC 2 cut(s) 921, 954
BanII GRGCYC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 1242
BbvI GCAGC 4 cut(s) 376, 853, 1034, 1036
BccI CCATC 2 cut(s) 670, 677
BcgI CGANNNNNNTGC 4 cut(s) 691, 725, 1470, 1504
BclI TGATCA 2 cut(s) 423, 760
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 4 cut(s) 101, 282, 618, 899
BcuI ACTAGT 1 cut(s) 1390
BfaI CTAG 4 cut(s) 1131, 1391, 1439, 1580
BfmI CTRYAG 1 cut(s) 817
BglI GCCNNNNNGGC 2 cut(s) 272, 955
BglII AGATCT 1 cut(s) 1273
BisI GCNGC 5 cut(s) 66, 365, 842, 1023, 1050
BlnI CCTAGG 1 cut(s) 1130
BlsI GCNGC 5 cut(s) 67, 366, 843, 1024, 1051
Bme1390I CCNGG 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 26, 1160
BmiI GGNNCC 3 cut(s) 233, 310, 688
BmrFI CCNGG 1 cut(s) 268
BmrI ACTGGG 1 cut(s) 390
BmsI GCATC 4 cut(s) 346, 1389, 1446, 1468
BmtI GCTAGC 1 cut(s) 1442
BmuI ACTGGG 1 cut(s) 390
BpiI GAAGAC 1 cut(s) 39
BplI GAGNNNNNCTC 2 cut(s) 1574, 1606
BpmI CTGGAG 3 cut(s) 45, 302, 353
Bpu10I CCTNAGC 1 cut(s) 1242
BpuMI CCSGG 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 831
BsaHI GRCGYC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 1130
BsaXI ACNNNNNCTCC 4 cut(s) 223, 253, 326, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 1305
Bse118I RCCGGY 1 cut(s) 958
Bse1I ACTGG 5 cut(s) 396, 584, 609, 1156, 1355
Bse3DI GCAATG 2 cut(s) 714, 1253
Bse8I GATNNNNATC 1 cut(s) 831
BseDI CCNNGG 1 cut(s) 1130
BseGI GGATG 2 cut(s) 78, 1295
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 1 cut(s) 1305
BseMI GCAATG 2 cut(s) 714, 1253
BseMII CTCAG 6 cut(s) 146, 452, 762, 1233, 1516, 1539
BseNI ACTGG 5 cut(s) 396, 584, 609, 1156, 1355
BseXI GCAGC 4 cut(s) 376, 853, 1034, 1036
BseYI CCCAGC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 110
Bsh1236I CGCG 2 cut(s) 385, 1212
BshFI GGCC 6 cut(s) 27, 373, 390, 958, 1162, 1413
BsiSI CCGG 2 cut(s) 268, 959
BslI CCNNNNNNNGG 1 cut(s) 1305
BsmAI GTCTC 4 cut(s) 101, 282, 618, 899
BsmBI CGTCTC 1 cut(s) 282
BsnI GGCC 6 cut(s) 27, 373, 390, 958, 1162, 1413
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 6 cut(s) 141, 423, 760, 1265, 1273, 1312
BspACI CCGC 3 cut(s) 66, 229, 480
BspANI GGCC 6 cut(s) 27, 373, 390, 958, 1162, 1413
BspCNI CTCAG 6 cut(s) 145, 451, 763, 1234, 1515, 1540
BspFNI CGCG 2 cut(s) 385, 1212
BspLI GGNNCC 3 cut(s) 233, 310, 688
BspMAI CTGCAG 1 cut(s) 821
BspOI GCTAGC 1 cut(s) 1442
BspPI GGATC 2 cut(s) 1273, 1320
BspQI GCTCTTC 1 cut(s) 1551
BsrBI CCGCTC 1 cut(s) 482
BsrDI GCAATG 2 cut(s) 714, 1253
BsrFI RCCGGY 1 cut(s) 958
BsrI ACTGG 5 cut(s) 396, 584, 609, 1156, 1355
BssAI RCCGGY 1 cut(s) 958
BssECI CCNNGG 1 cut(s) 1130
BssMI GATC 6 cut(s) 141, 423, 760, 1265, 1273, 1312
BssNAI GTATAC 1 cut(s) 401
BssNI GRCGYC 1 cut(s) 275
BssT1I CCWWGG 1 cut(s) 1130
Bst1107I GTATAC 1 cut(s) 401
Bst4CI ACNGT 2 cut(s) 650, 751
Bst6I CTCTTC 4 cut(s) 182, 879, 1077, 1551
BstACI GRCGYC 1 cut(s) 275
BstC8I GCNNGC 9 cut(s) 175, 202, 264, 273, 547, 960, 1289, 1440, 1563
BstDEI CTNAG 9 cut(s) 132, 438, 526, 771, 836, 1242, 1502, 1548, 1600
BstF5I GGATG 2 cut(s) 78, 1295
BstFNI CGCG 2 cut(s) 385, 1212
BstKTI GATC 6 cut(s) 144, 426, 763, 1268, 1276, 1315
BstMAI GTCTC 4 cut(s) 101, 282, 618, 899
BstMBI GATC 6 cut(s) 141, 423, 760, 1265, 1273, 1312
BstMWI GCNNNNNNNGC 5 cut(s) 268, 272, 370, 955, 981
BstNSI RCATGY 3 cut(s) 1339, 1485, 1565
BstSCI CCNGG 1 cut(s) 266
BstSFI CTRYAG 1 cut(s) 817
BstUI CGCG 2 cut(s) 385, 1212
BstV1I GCAGC 4 cut(s) 376, 853, 1034, 1036
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 2 cut(s) 1273, 1312
BstYI RGATCY 2 cut(s) 1273, 1312
BstZ17I GTATAC 1 cut(s) 401
BsuRI GGCC 6 cut(s) 27, 373, 390, 958, 1162, 1413
BtsCI GGATG 2 cut(s) 78, 1295
BtsI GCAGTG 2 cut(s) 374, 438
BtsIMutI CAGTG 3 cut(s) 374, 438, 870
Cac8I GCNNGC 9 cut(s) 175, 202, 264, 273, 547, 960, 1289, 1440, 1563
Cfr10I RCCGGY 1 cut(s) 958
Cfr13I GGNCC 2 cut(s) 26, 1160
CseI GACGC 1 cut(s) 264
Csp6I GTAC 5 cut(s) 158, 930, 978, 1126, 1224
CspCI CAANNNNNGTGG 2 cut(s) 907, 942
CviAII CATG 9 cut(s) 169, 251, 716, 1030, 1321, 1336, 1377, 1482, 1562
CviQI GTAC 5 cut(s) 158, 930, 978, 1126, 1224
DdeI CTNAG 9 cut(s) 132, 438, 526, 771, 836, 1242, 1502, 1548, 1600
DpnI GATC 6 cut(s) 143, 425, 762, 1267, 1275, 1314
DpnII GATC 6 cut(s) 141, 423, 760, 1265, 1273, 1312
DraI TTTAAA 1 cut(s) 1059
EaeI YGGCCR 1 cut(s) 371
Eam1104I CTCTTC 4 cut(s) 182, 879, 1077, 1551
EarI CTCTTC 4 cut(s) 182, 879, 1077, 1551
EciI GGCGGA 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 1130
Eco24I GRGCYC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 1416
EcoO109I RGGNCCY 1 cut(s) 1160
EcoT14I CCWWGG 1 cut(s) 1130
EcoT22I ATGCAT 2 cut(s) 1382, 1483
EcoT38I GRGCYC 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 1130
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 9 cut(s) 172, 254, 719, 1033, 1324, 1339, 1380, 1485, 1565
FalI AAGNNNNNCTT 4 cut(s) 1074, 1106, 1106, 1138
FatI CATG 9 cut(s) 168, 250, 715, 1029, 1320, 1335, 1376, 1481, 1561
FauI CCCGC 1 cut(s) 487
FauNDI CATATG 1 cut(s) 301
FbaI TGATCA 2 cut(s) 423, 760
FblI GTMKAC 1 cut(s) 400
Fnu4HI GCNGC 5 cut(s) 66, 365, 842, 1023, 1050
FokI GGATG 2 cut(s) 65, 1282
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 5 cut(s) 66, 365, 842, 1023, 1050
FspBI CTAG 4 cut(s) 1131, 1391, 1439, 1580
GluI GCNGC 5 cut(s) 66, 365, 842, 1023, 1050
GsaI CCCAGC 1 cut(s) 218
GsuI CTGGAG 3 cut(s) 45, 302, 353
HaeIII GGCC 6 cut(s) 27, 373, 390, 958, 1162, 1413
HapII CCGG 2 cut(s) 268, 959
HgaI GACGC 1 cut(s) 264
Hin1I GRCGYC 1 cut(s) 275
Hin1II CATG 9 cut(s) 172, 254, 719, 1033, 1324, 1339, 1380, 1485, 1565
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 8 cut(s) 147, 165, 436, 505, 907, 988, 1070, 1487
HpaII CCGG 2 cut(s) 268, 959
Hpy166II GTNNAC 5 cut(s) 401, 577, 915, 1333, 1349
Hpy188I TCNGA 8 cut(s) 106, 139, 146, 313, 504, 522, 1435, 1603
Hpy188III TCNNGA 8 cut(s) 281, 485, 670, 770, 857, 992, 1475, 1504
Hpy8I GTNNAC 5 cut(s) 401, 577, 915, 1333, 1349
HpyAV CCTTC 7 cut(s) 177, 421, 522, 1090, 1318, 1424, 1489
HpyCH4III ACNGT 2 cut(s) 650, 751
HpyCH4IV ACGT 2 cut(s) 156, 936
HpyF10VI GCNNNNNNNGC 5 cut(s) 268, 272, 370, 955, 981
HpyF3I CTNAG 9 cut(s) 132, 438, 526, 771, 836, 1242, 1502, 1548, 1600
HpySE526I ACGT 2 cut(s) 156, 936
Hsp92I GRCGYC 1 cut(s) 275
Hsp92II CATG 9 cut(s) 172, 254, 719, 1033, 1324, 1339, 1380, 1485, 1565
KroI GCCGGC 1 cut(s) 958
KroNI GCCGGC 1 cut(s) 960
Ksp22I TGATCA 2 cut(s) 423, 760
Kzo9I GATC 6 cut(s) 141, 423, 760, 1265, 1273, 1312
LguI GCTCTTC 1 cut(s) 1551
LmnI GCTCC 4 cut(s) 231, 334, 456, 487
Lsp1109I GCAGC 4 cut(s) 376, 853, 1034, 1036
LweI GCATC 4 cut(s) 346, 1389, 1446, 1468
MaeI CTAG 4 cut(s) 1131, 1391, 1439, 1580
MaeII ACGT 2 cut(s) 156, 936
MaeIII GTNAC 3 cut(s) 433, 697, 937
MalI GATC 6 cut(s) 143, 425, 762, 1267, 1275, 1314
MbiI CCGCTC 1 cut(s) 482
MboI GATC 6 cut(s) 141, 423, 760, 1265, 1273, 1312
MflI RGATCY 2 cut(s) 1273, 1312
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 7 cut(s) 586, 632, 719, 730, 1008, 1053, 1188
MluI ACGCGT 1 cut(s) 1210
MlyI GAGTC 4 cut(s) 156, 430, 901, 982
MmeI TCCRAC 4 cut(s) 117, 545, 805, 1290
Mph1103I ATGCAT 2 cut(s) 1382, 1483
MroNI GCCGGC 1 cut(s) 958
MroXI GAANNNNTTC 1 cut(s) 1086
MseI TTAA 7 cut(s) 405, 446, 471, 741, 1058, 1464, 1574
MspI CCGG 2 cut(s) 268, 959
MspR9I CCNGG 1 cut(s) 268
MvnI CGCG 2 cut(s) 385, 1212
MwoI GCNNNNNNNGC 5 cut(s) 268, 272, 370, 955, 981
NaeI GCCGGC 1 cut(s) 960
NciI CCSGG 1 cut(s) 268
NdeI CATATG 1 cut(s) 301
NdeII GATC 6 cut(s) 141, 423, 760, 1265, 1273, 1312
NgoMIV GCCGGC 1 cut(s) 958
NheI GCTAGC 1 cut(s) 1438
NlaIII CATG 9 cut(s) 172, 254, 719, 1033, 1324, 1339, 1380, 1485, 1565
NlaIV GGNNCC 3 cut(s) 233, 310, 688
NmuCI GTSAC 1 cut(s) 433
NsiI ATGCAT 2 cut(s) 1382, 1483
NspI RCATGY 3 cut(s) 1339, 1485, 1565
PaeI GCATGC 1 cut(s) 1565
PciI ACATGT 1 cut(s) 1335
PciSI GCTCTTC 1 cut(s) 1551
PdiI GCCGGC 1 cut(s) 960
PdmI GAANNNNTTC 1 cut(s) 1086
PfeI GAWTC 4 cut(s) 165, 505, 1070, 1487
PkrI GCNGC 5 cut(s) 67, 366, 843, 1024, 1051
PleI GAGTC 4 cut(s) 155, 430, 901, 982
PpsI GAGTC 4 cut(s) 155, 430, 901, 982
PscI ACATGT 1 cut(s) 1335
PshBI ATTAAT 1 cut(s) 1574
PspFI CCCAGC 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 233, 310, 688
PspPI GGNCC 2 cut(s) 26, 1160
PsrI GAACNNNNNNTAC 2 cut(s) 483, 515
PstI CTGCAG 1 cut(s) 821
PsuI RGATCY 2 cut(s) 1273, 1312
RsaI GTAC 5 cut(s) 159, 931, 979, 1127, 1225
RsaNI GTAC 5 cut(s) 158, 930, 978, 1126, 1224
SapI GCTCTTC 1 cut(s) 1551
SaqAI TTAA 7 cut(s) 405, 446, 471, 741, 1058, 1464, 1574
SatI GCNGC 5 cut(s) 66, 365, 842, 1023, 1050
Sau3AI GATC 6 cut(s) 141, 423, 760, 1265, 1273, 1312
Sau96I GGNCC 2 cut(s) 26, 1160
SchI GAGTC 4 cut(s) 156, 430, 901, 982
ScrFI CCNGG 1 cut(s) 268
SduI GDGCHC 1 cut(s) 236
SfaNI GCATC 4 cut(s) 346, 1389, 1446, 1468
SfcI CTRYAG 1 cut(s) 817
SpeI ACTAGT 1 cut(s) 1390
SphI GCATGC 1 cut(s) 1565
Sse9I AATT 7 cut(s) 586, 632, 719, 730, 1008, 1053, 1188
SsiI CCGC 3 cut(s) 66, 229, 480
SspMI CTAG 4 cut(s) 1131, 1391, 1439, 1580
StyD4I CCNGG 1 cut(s) 266
StyI CCWWGG 1 cut(s) 1130
TaaI ACNGT 2 cut(s) 650, 751
TaiI ACGT 2 cut(s) 159, 939
TaqI TCGA 1 cut(s) 795
TasI AATT 7 cut(s) 586, 632, 719, 730, 1008, 1053, 1188
TatI WGTACW 1 cut(s) 977
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 4 cut(s) 165, 505, 1070, 1487
Tru1I TTAA 7 cut(s) 405, 446, 471, 741, 1058, 1464, 1574
Tru9I TTAA 7 cut(s) 405, 446, 471, 741, 1058, 1464, 1574
TscAI CASTG 3 cut(s) 374, 438, 877
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 4 cut(s) 364, 841, 1022, 1049
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 8 cut(s) 732, 1011, 1077, 1194, 1337, 1413, 1461, 1518
TspRI CASTG 3 cut(s) 374, 438, 877
VspI ATTAAT 1 cut(s) 1574
XapI RAATTY 1 cut(s) 1008
XceI RCATGY 3 cut(s) 1339, 1485, 1565
XcmI CCANNNNNNNNNTGG 1 cut(s) 1327
XmaJI CCTAGG 1 cut(s) 1130
XmiI GTMKAC 1 cut(s) 400
XmnI GAANNNNTTC 1 cut(s) 1086
XspI CTAG 4 cut(s) 1131, 1391, 1439, 1580
Zsp2I ATGCAT 2 cut(s) 1382, 1483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.