pycom10g16940

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0004974
Physical Location & Seq
Forward (+)
20136874 .. 20140524
3651 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1014 bp
ATGGCGGATCGGATGCGTAGTTTCTTTAAGGGCGAGGTCCTCACTTACGCCTACCTTCTTCTCTACATCGCGCTCTCCAGCAGCCAGATCTTCTTCAACAAGTGGGTTTTGTCGTCTAAGGAAATAAACTTCCCTTATCCTCTTGGTTTAACTCTGCTTCACATGGTCTTCTCCTCTGTCTTATGCTTTTTACTCACAAAAGTTTTTAAGATATTGAAGGTTGAGGAAGGAATGACTGTAGAAATATATGTGACATCGGTAATGCCAATTGGTGCAATGTTTGCAATGACTCTTTGGTTGGGAAATACTGCCTACATGTATATTTCTGTTTCATTTGCACAAATGTTGAAAGCAATCATGCCAGTAGCTGTTTTCATTCTTGGAGTAGCAGCAGGACTTGAGGTAATGAGCGGCAGAATGCTATTGATCATGTCAGTGATAAGTTTTGGTGTTCTTGTGGCTTCTTACGGTGAAATAAATATCAGCTGGATTGGAGTAGTTTATCAGATGGGAGGAGTGGTTGGAGAAGCTTTAAGACTTATTTTTATGGAGATTTTTGTTAAAAGGAAGGGTCTCAAATTAAATCCAATATCTCTCATGTACTATGTTAGCCCGTGCAGTGCTCTTTGCCTCTTCGTTCCATGGATCGATTTGGAGAAATCAAAGATGGAAGAAAATAGCTCATGGAACTTTCCACTGCTTGTGCTAACACTTAACTCTCTGTGTACTTTTGCCCTCAACTTATCAGTTTTCCTAGTGATCACTCATACAAGTGCCTTGACCATTCGTGTTGCGGGAGTTGTCAAGGATTGGGTGGTTGTCTTATTGTCTGCCATTATTTTTGCTGATACAAAGCTCACTCCTATAAATCTGGCCGGTTATGCCATTGCCATAGCAGGTGTAGCGGCATATAATAATTATAAGTTAAAAAAGGAAGTCTCTAAAGGCAACTCTGAAGAACCTGAAAGTTCTCAACCTATGCTAACGGCTGCATCATCAAATTCTGACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

338

Amino Acids

37.24

Weight (kDa)

8.72

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 18 - 305 5.6e-25 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 921
AarI CACCTGC 1 cut(s) 887
Acc36I ACCTGC 1 cut(s) 887
AccBSI CCGCTC 1 cut(s) 411
AccII CGCG 1 cut(s) 71
AciI CCGC 4 cut(s) 5, 411, 794, 905
AclWI GGATC 2 cut(s) 15, 653
AcoI YGGCCR 1 cut(s) 873
AcsI RAATTY 1 cut(s) 1000
AcuI CTGAAG 1 cut(s) 975
AfaI GTAC 2 cut(s) 602, 727
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 3 cut(s) 97, 217, 349
AluBI AGCT 5 cut(s) 368, 486, 530, 681, 856
AluI AGCT 5 cut(s) 368, 486, 530, 681, 856
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 2 cut(s) 578, 943
AlwI GGATC 2 cut(s) 15, 653
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 1 cut(s) 873
ApeKI GCWGC 3 cut(s) 81, 389, 989
ApoI RAATTY 1 cut(s) 1000
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 482
AvaII GGWCC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 3 cut(s) 93, 401, 976
BccI CCATC 2 cut(s) 502, 661
BceAI ACGGC 1 cut(s) 1002
BclI TGATCA 2 cut(s) 426, 759
BcoDI GTCTC 2 cut(s) 578, 943
BfaI CTAG 1 cut(s) 755
BfmI CTRYAG 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 887
BglII AGATCT 1 cut(s) 87
BisI GCNGC 5 cut(s) 82, 390, 412, 906, 990
BlsI GCNGC 5 cut(s) 83, 391, 413, 907, 991
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmsI GCATC 2 cut(s) 3, 1001
BpiI GAAGAC 1 cut(s) 160
BpmI CTGGAG 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 419
Bsa29I ATCGAT 1 cut(s) 648
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 1 cut(s) 641
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bse118I RCCGGY 1 cut(s) 875
Bse1I ACTGG 1 cut(s) 362
Bse3DI GCAATG 3 cut(s) 282, 291, 885
BseCI ATCGAT 1 cut(s) 648
BseDI CCNNGG 1 cut(s) 641
BseGI GGATG 1 cut(s) 18
BseMI GCAATG 3 cut(s) 282, 291, 885
BseNI ACTGG 1 cut(s) 362
BseRI GAGGAG 2 cut(s) 163, 528
BseXI GCAGC 3 cut(s) 93, 401, 976
BsgI GTGCAG 1 cut(s) 637
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 875
BshVI ATCGAT 1 cut(s) 648
BsiHKAI GWGCWC 1 cut(s) 625
BsiSI CCGG 1 cut(s) 876
BsmAI GTCTC 2 cut(s) 578, 943
BsmI GAATGC 1 cut(s) 423
BsnI GGCC 1 cut(s) 875
Bso31I GGTCTC 1 cut(s) 578
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 5 cut(s) 7, 87, 426, 645, 759
Bsp19I CCATGG 1 cut(s) 641
BspACI CCGC 4 cut(s) 5, 411, 794, 905
BspANI GGCC 1 cut(s) 875
BspDI ATCGAT 1 cut(s) 648
BspFNI CGCG 1 cut(s) 71
BspMI ACCTGC 1 cut(s) 887
BspPI GGATC 2 cut(s) 15, 653
BspTNI GGTCTC 1 cut(s) 578
BsrBI CCGCTC 1 cut(s) 411
BsrDI GCAATG 3 cut(s) 282, 291, 885
BsrFI RCCGGY 1 cut(s) 875
BsrI ACTGG 1 cut(s) 362
BssAI RCCGGY 1 cut(s) 875
BssECI CCNNGG 1 cut(s) 641
BssMI GATC 5 cut(s) 7, 87, 426, 645, 759
BssT1I CCWWGG 1 cut(s) 641
Bst4CI ACNGT 2 cut(s) 238, 470
Bst6I CTCTTC 1 cut(s) 638
BstAPI GCANNNNNTGC 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 117
BstDSI CCRYGG 1 cut(s) 641
BstF5I GGATG 1 cut(s) 18
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 5 cut(s) 10, 90, 429, 648, 762
BstMAI GTCTC 2 cut(s) 578, 943
BstMBI GATC 5 cut(s) 7, 87, 426, 645, 759
BstMWI GCNNNNNNNGC 3 cut(s) 281, 881, 902
BstNSI RCATGY 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 237
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 3 cut(s) 93, 401, 976
BstV2I GAAGAC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
Bsu15I ATCGAT 1 cut(s) 648
BsuRI GGCC 1 cut(s) 875
BsuTUI ATCGAT 1 cut(s) 648
BtgI CCRYGG 1 cut(s) 641
BtgZI GCGATG 1 cut(s) 52
BtsCI GGATG 1 cut(s) 18
BtsI GCAGTG 2 cut(s) 625, 695
BtsIMutI CAGTG 3 cut(s) 441, 625, 695
BveI ACCTGC 1 cut(s) 887
CaiI CAGNNNCTG 1 cut(s) 368
CfoI GCGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 875
Cfr13I GGNCC 1 cut(s) 37
ClaI ATCGAT 1 cut(s) 648
Csp6I GTAC 2 cut(s) 601, 726
CviAII CATG 7 cut(s) 163, 316, 358, 430, 598, 642, 684
CviQI GTAC 2 cut(s) 601, 726
DdeI CTNAG 1 cut(s) 117
DpnI GATC 5 cut(s) 9, 89, 428, 647, 761
DpnII GATC 5 cut(s) 7, 87, 426, 645, 759
EaeI YGGCCR 1 cut(s) 873
Eam1104I CTCTTC 1 cut(s) 638
EarI CTCTTC 1 cut(s) 638
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 641
Eco31I GGTCTC 1 cut(s) 578
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 975
EcoO109I RGGNCCY 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 641
ErhI CCWWGG 1 cut(s) 641
FaeI CATG 7 cut(s) 166, 319, 361, 433, 601, 645, 687
FatI CATG 7 cut(s) 162, 315, 357, 429, 597, 641, 683
FauI CCCGC 1 cut(s) 787
FbaI TGATCA 2 cut(s) 426, 759
Fnu4HI GCNGC 5 cut(s) 82, 390, 412, 906, 990
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 5 cut(s) 82, 390, 412, 906, 990
FspBI CTAG 1 cut(s) 755
GlaI GCGC 1 cut(s) 72
GluI GCNGC 5 cut(s) 82, 390, 412, 906, 990
GsuI CTGGAG 1 cut(s) 61
HaeIII GGCC 1 cut(s) 875
HapII CCGG 1 cut(s) 876
HhaI GCGC 1 cut(s) 73
Hin1II CATG 7 cut(s) 166, 319, 361, 433, 601, 645, 687
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 1 cut(s) 289
HpaII CCGG 1 cut(s) 876
HphI GGTGA 1 cut(s) 482
Hpy166II GTNNAC 1 cut(s) 726
Hpy188I TCNGA 4 cut(s) 12, 507, 955, 1006
Hpy8I GTNNAC 1 cut(s) 726
HpyAV CCTTC 4 cut(s) 65, 211, 221, 562
HpyCH4III ACNGT 2 cut(s) 238, 470
HpyCH4V TGCA 5 cut(s) 275, 284, 338, 618, 992
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 881, 902
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 7 cut(s) 166, 319, 361, 433, 601, 645, 687
HspAI GCGC 1 cut(s) 71
Ksp22I TGATCA 2 cut(s) 426, 759
Kzo9I GATC 5 cut(s) 7, 87, 426, 645, 759
LpnPI CCDG 9 cut(s) 91, 98, 375, 378, 472, 857, 882, 889, 975
Lsp1109I GCAGC 3 cut(s) 93, 401, 976
LweI GCATC 2 cut(s) 3, 1001
MaeI CTAG 1 cut(s) 755
MaeIII GTNAC 1 cut(s) 250
MalI GATC 5 cut(s) 9, 89, 428, 647, 761
MbiI CCGCTC 1 cut(s) 411
MboI GATC 5 cut(s) 7, 87, 426, 645, 759
MboII GAAGA 7 cut(s) 50, 82, 85, 160, 625, 683, 968
MfeI CAATTG 1 cut(s) 267
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 4 cut(s) 267, 578, 916, 1000
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 502
MnlI CCTC 9 cut(s) 28, 50, 150, 184, 217, 394, 506, 641, 746
MseI TTAA 8 cut(s) 27, 149, 207, 533, 561, 581, 714, 926
MslI CAYNNNNRTG 2 cut(s) 434, 771
MspA1I CMGCKG 1 cut(s) 486
MspI CCGG 1 cut(s) 876
MunI CAATTG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 423
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 3 cut(s) 281, 881, 902
NcoI CCATGG 1 cut(s) 641
NdeII GATC 5 cut(s) 7, 87, 426, 645, 759
NlaIII CATG 7 cut(s) 166, 319, 361, 433, 601, 645, 687
NmuCI GTSAC 1 cut(s) 250
NspI RCATGY 1 cut(s) 319
PaqCI CACCTGC 1 cut(s) 887
PciI ACATGT 1 cut(s) 315
PctI GAATGC 1 cut(s) 423
PkrI GCNGC 5 cut(s) 83, 391, 413, 907, 991
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 37
PscI ACATGT 1 cut(s) 315
PsiI TTATAA 1 cut(s) 921
Psp5II RGGWCCY 1 cut(s) 37
PspPI GGNCC 1 cut(s) 37
PspPPI RGGWCCY 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 87
PvuII CAGCTG 1 cut(s) 486
RsaI GTAC 2 cut(s) 602, 727
RsaNI GTAC 2 cut(s) 601, 726
RseI CAYNNNNRTG 2 cut(s) 434, 771
SaqAI TTAA 8 cut(s) 27, 149, 207, 533, 561, 581, 714, 926
SatI GCNGC 5 cut(s) 82, 390, 412, 906, 990
Sau3AI GATC 5 cut(s) 7, 87, 426, 645, 759
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 1 cut(s) 283
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 2 cut(s) 3, 1001
SfcI CTRYAG 1 cut(s) 237
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 2 cut(s) 434, 771
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 4 cut(s) 267, 578, 916, 1000
SsiI CCGC 4 cut(s) 5, 411, 794, 905
SspMI CTAG 1 cut(s) 755
StyI CCWWGG 1 cut(s) 641
TaaI ACNGT 2 cut(s) 238, 470
TaqI TCGA 1 cut(s) 648
TasI AATT 4 cut(s) 267, 578, 916, 1000
TatI WGTACW 2 cut(s) 600, 725
TauI GCSGC 2 cut(s) 414, 908
Tru1I TTAA 8 cut(s) 27, 149, 207, 533, 561, 581, 714, 926
Tru9I TTAA 8 cut(s) 27, 149, 207, 533, 561, 581, 714, 926
TscAI CASTG 3 cut(s) 441, 625, 702
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 3 cut(s) 81, 389, 989
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 2 cut(s) 321, 364
TspRI CASTG 3 cut(s) 441, 625, 702
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 1000
XceI RCATGY 1 cut(s) 319
XspI CTAG 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.