pycom10g17640
MYB Family

Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014066
Physical Location & Seq
Reverse (-)
20867368 .. 20873289
5922 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 4629 bp
ATGTATGAGAAAAGACTGAATGGGATTCTAGCCGACGAGATGGGGCTTGGGAAGACAATCATGACAATTGCTTTGCTTGCACACCTAGCATGTGAAAAGGGAATATGGGGTCCTCATCTTATTGTGGTCCCAACTAGTGTAATGCTTAATTGGGAGACTGAGTTTCTTAAATGGTGTCCAGCTTTCAAAATCCTAACTTATTTTGGAAGTGCTAAAGAGCGCAAGTTGAAAAGGCAAGGCTGGTTGAAACCAAACTCATTTCATATATGCATAACAACATACAGACTGGTTATTCAAGATTCAAAAGTTTTCAAGCGTAAGAAGTGGAAGTACTTGATTTTAGATGAAGCCCATCTGATTAAAAATTGGAAGTCTCAGAGGTGGCAGACTCTTTTGAACTTCAATTCCAAACGGCGCATTTTGTTAACTGGTACTCCTCTACAAAATGATCTCATGGAACTTTGGTCTCTAATGCATTTCTTGATGCCCCATGTATTTCAGTCTCATCAGGAATTCAAGGATTGGTTCTCTAATCCAATATCAGGGATGGTTGAGGGGCAAGAAAGAGTAAATAAAGAAGTTCTTGATCGTCTGCATAATGTTCTTCGTCCATTCATTCTCCGTCGTTTAAAACGAGATGTGGAGAAGCAGCTTCCTATGAAACATGAGCATGTCATATACTGTAGACTCTCCAAGAGGCAGCGTAACTTGTATGAAGACTTCATTGCTAGCTCCGAAACACAAGCAACTCTTGCAAGTGCAAATTTTTTTGGAATGATAAGTATTATAATGCAACTTCGTAAAGTATGCAATCATCCCGACTTATTTGAAGGTCGTCCAATTGTCAGTTCCTATGATATGGGGGGTATTTACACACAATTGAGTTCTTCAGTATGTTCAATTCTTTTACCTGGACCCTTTTCTGCAGTAGACCTTAAGGGTTTAGGGTTTTTACTTACTCATTTAGATTTTACAATGAATTCTTGGGAGAGTGATGAAGTTAAAGCTCTTGCTACGCCATCAAATTCAATCAAGGAGCGTGTAGAACTGATTAATCTTGAAGATATTGGTGGACTTAAACATCGCAAGAAGTTGCATGGTACCAATATTTTTGAAGACATTCATAAGGCAATTATGGAGGAGAGACTAAGACAAGCAAAGGAACATGCTGCAGCTATTGCATGGTGGAATTCCTTGAGGTGCGACAGGAAACCCATATACTCAACAAGCCTAAGGGAGCTTGTTACAGTAAGACATCCTGTTTTTGATATTCATCGTCACAAGGCTAATCCTATATCCTACATGCACTCCTCAAAGCTTGCTGATATAGTCCTTTCACCAGTGGAGCGCTTCCAGGAAACGATTGACCTGGTTGAAAGCTTCTTGTTTGCAATCCCCGCCGCACGAGCGCCACCACCTGTATGCTGGTGCAATAAGTCTGTAAGTTCTGTGTTTCTGCATCCAGCTTATAAGCAGAAATGCTCTGAATACTTGTCACCACTTTTATCACCATTCAGACCTGCAATTGTTCGAAGGCAAGTATATTTTCCTGACAGGCGACTTATACAATTTGACTGTGGTAAATTGCAAGAGCTTGCAGTTTTACTTAGAAAACTAAAGTCAGAAGGTCACAGAGCACTAATATTCACTCAGATGACCAAGATGCTTGATACCTTGGAGGCTTTCATCAATCTGTATGGTTACACATATATGCGTTTAGATGGATCCACTCCGCCAGAGGAGAGGCAGACTTTAATGCAGCGGTTTAACACGAATCCAAAAATTTTTCTTTTCATATTGTCAACCCGTAGTGGGGGTGTGGGTATTAACCTAGTTGGGGCAGACACTGTTATCTTTTATGATAGTGACTGGAATCCTGCTATGGACCAACAAGCTCAAGATCGATGCCACCGTATTGGACAGACACGTGAAGTAAATATTTATCGGTTGATCAGTCAGAGTACCATTGAAGAAAATATCCTGAAGAAGGCAAATCAGAAGCGTGCACTTGATGATCTAGTTATACAGAGTGGGGGCTACAACACTGAATTCTTCAAAAAGCTTGACCCTGTGGAGCTTTTCTCTGGTCTTAGGGCACTTCCCGTGAAGAATATGCAAAAGGAGAAAAATCACAACGCAACTGAGGTTTCTCTGTCTAATGCTGATCTTGAAGCTGCTCTAAAGCATGCAGAAGATGAAGCAGATTACATGGCATTAAAGAAAGTTGAGCAGGAAGAAGCTGTGGACAACCAAGAATTTACAGAAGAAGCCATTGTGAGATTGGAAGATGATGAATTAGTAAATGAGGACGATGTGAAGATTGATGAACCTGCAGATCGGGGTGGATGCGTGGCGTCTTCAAGCAAAGAAAATGGGGGTGATCCTAATGAAGGAAGAGCTCATACTGTTGCTTGTAGAGAAGATGATGTGGACATGATGGCTGATGTCAAACAGATGGCTGCGGCTGCTGCAGCTGCAGGACAAGAAATCTCATCATTTGGCAATCAATTACGTCCGATAGATAGGTATGCAATTCGTTTTCTAGAATTGTGGGACCCAATTATAGACAAGAAAGCAGTGGAATCTCAGGCTAGGTTTGAGGAGACAGAATGGGAACTGGACCGCATTGAAAAATACAAGGAGGAAATGGAAGCTGAGATTGATGAAGATGAGGAACCTCTTGTGTATGAAACATGGGATGCTGATTTTGCAACTGAGGCATATCGGCAGCAGGTTGAGGCTTTAGCTCAAATTCAGTTAGAGGAACTGGAATACGAAGCTAAACTGAAGGAAGATGAAGCAGAGGAAAATGGTGATTCTATGAAGAATGAGGTGCCAATTGATCCTAAACCAAAGACTAAGAAGAAATCGAAGAAAGCCAAATTTAAATCTCTGAAGAAACAGTCTCTAGCTTCTGAACTGAAACCTTTGAAAGGAGAGCTACAAGCTGAACCTATGTCCATAGATGAAGACTCTCTCTCTCATGAGATGGTTACCTATTCCGATACGGAATCACCACGTTCAAGCGTGCAGAGAAAACGTAAGAAGGCTGAAGTCATACCAGTCGGCGAAGAGAAGAGTTCAAAGAAGAAGTCTAAGAAGCTCAAGAAGTCTACTCTTGAAATATGTCCTACGGAGCTTGATACTAACCTCACTACTATGGATCATGATGAAGTTACAGAGTCAAAACCATGTGAGAGTATGGTTGAGTTTGATCATAAGCCAGCTAGCAGAAGCAAAATGGGAGGGAAAATTTCTATCACTTCCATGCCTGTAAAGCGAATTCTACTGATTAAACCAGAGAAGCTAAAGAAGGGGAACATTTGGTCTAGAGACTGTATTCCATCACCAGATTTTTGGTTGTCACAGGAGGATGCTATGTTATGTGCTGTTGTACATGAGTATGGTCCTCATTGGAGCTTGGTTAGTGACGTGCTTTATGGAATGACCGCTGGTGGGTTTTATAGGGGAAGATATCGCCATCCCATCCATTGCTGTGAGAGATTTAGGGAACTCATCCAAAGATATGTTTTGTCTACACCAGACAATCCTAACTATGAAAAAGTTAACAATATAGGATCTGGAAAGGCTCTTCTAAAAGTGACAGAGGATAATATTCGAATGCTATTAAACGTTGCCGCCGACCAGCCCAATACAGAGTTCCTCATTCAGAAACACTTCACTGCCTTGCTTTCAGCTATCTGGAAGGTGACATCCCACAAAGACCGCCGAAAAAATCTCCCATCTTCCCAGAATGGTTTATATTTTGGGGGAAGCATTTTCAGCCCTTCCAACCAAAAGTCTCAAACTCCCATGATGGAACGTACAGAAAGAATGAAATTGACCAATTTCGGACACGGTACCAAGTTGGTAGCGGCTGCACTGAATGATGCCAGCAACAGACAGGGTACCAAGTTGGTACCAGCTGCACTTAATGATGCCAGCAGCAGGCGTGACAATGACACAGTCTTTCGTCCAAACCTGGGGAAAGATTCTTCAATTGAATCAGAACGGTTGGATATAACTCTGGAATTTCAGGGAGCAAAAGATGACACAATGGATGAATTGCCATCTGTTTTAAATTTATCAATATCTGATTCTGACCGTTTTTCATCTCTAAATAAAGCTACTGAAGATCATCATCTTAGGAAATCAAGCAATGTAAATTTGGCTGAGAACCGTTTCAGGACCGCAACAAGAACTTGCAATGAAGATGCCATGGGATGGGCCTCATCGGTATTCCCGACAAATGATATCAGGTCTCGGTCAATGTCAAAGTTACCGACCACGGGAAAGCACAAACTTGTCTTCTCTGATTCCGTTAGACCTTCCAAATCGAAGATCAGAAAAAGTTCAGTGGAGCATGGTGAGATGCGTAACTTCGTTTCTGAGCAGGTACTCCCACCTTTCCCAATGGCTGCACCCCTGAATCCAAATCCGAGGTTTGACCTGAACACCCCCATCGATGAGGATGCTGGAATTTATGATTTGGAAAGCAATTCCTTTTCTTGCCTTGACGATTCTTTGCTGGAAATGGAAACCTTTGGAGTTCTCCCACATGAATACGTTCCTGGCTTGATTGGAGGCCTCGATGATGAACAATTGCCAGAATATACCGACATTGGGTAA

Protein Analysis

1543

Amino Acids

175.91

Weight (kDa)

6.28

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 4 - 275 4e-85 SNF2-related domain
ResIII PF04851 5 - 146 1.4e-09 Type III restriction enzyme, res subunit
DEAD PF00270 9 - 147 3.4e-08 DEAD/DEAH box helicase
Helicase_C PF00271 528 - 640 1.5e-26 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12810 AT3G12810
fragaria_vesca FvH4_3g15170
malus_domestica MD10G1206600.v1.1
prunus_persica Prupe.4G135700_v2.0.a1 Prupe.4G135700_v2.0.a1
pyrus_communis pycom10g17640
rosa_chinensis RchiOBHm_Chr5g0025621
rosa_laevigata RLG00000032852
rosa_multiflora Rmu_sc0004107.1_g000018
rosa_roxburghii Rroxscaffold_1G00054140
rosa_rugosa Rorug05G0087200
rosa_samantha Rh5AG179000 Rh5BG178100 Rh5CG195700 Rh5DG177300
rosa_wichuraiana Rw5G016250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 788, 1470
Acc36I ACCTGC 4 cut(s) 1528, 2338, 2722, 4384
Acc65I GGTACC 4 cut(s) 1100, 3860, 3908, 3919
AccB1I GGYRCC 5 cut(s) 1100, 2833, 3860, 3908, 3919
AccB7I CCANNNNNTGG 1 cut(s) 4224
AccI GTMKAC 4 cut(s) 685, 930, 3113, 3536
AclI AACGTT 1 cut(s) 3633
AclWI GGATC 6 cut(s) 1719, 1732, 2375, 2837, 3171, 3586
AcuI CTGAAG 6 cut(s) 873, 2003, 2807, 2915, 3072, 4152
AcvI CACGTG 1 cut(s) 1928
AcyI GRCGYC 1 cut(s) 2354
AfeI AGCGCT 1 cut(s) 1349
AflII CTTAAG 1 cut(s) 935
AflIII ACRYGT 1 cut(s) 1925
AhlI ACTAGT 1 cut(s) 134
AjiI CACGTC 1 cut(s) 3433
AjnI CCWGG 5 cut(s) 910, 1353, 1368, 3981, 4570
AjuI GAANNNNNNNTTGG 4 cut(s) 832, 864, 3644, 3676
AloI GAACNNNNNNTCC 2 cut(s) 389, 421
Alw21I GWGCWC 3 cut(s) 1639, 2008, 2401
Alw44I GTGCAC 1 cut(s) 2004
AlwI GGATC 6 cut(s) 1719, 1732, 2375, 2837, 3171, 3586
AlwNI CAGNNNCTG 1 cut(s) 1847
Aor51HI AGCGCT 1 cut(s) 1349
AoxI GGCC 2 cut(s) 4227, 4585
ApaLI GTGCAC 1 cut(s) 2004
ArsI GACNNNNNNTTYG 4 cut(s) 55, 87, 3077, 3109
AseI ATTAAT 1 cut(s) 1053
Asp700I GAANNNNTTC 5 cut(s) 1119, 3677, 4181, 4351, 4566
Asp718I GGTACC 4 cut(s) 1100, 3860, 3908, 3919
AspLEI GCGC 4 cut(s) 222, 417, 1350, 1411
AspS9I GGNCC 9 cut(s) 110, 127, 914, 1885, 2554, 2620, 3407, 4188, 4227
AsuHPI GGTGA 9 cut(s) 1329, 1488, 1500, 2390, 2825, 3006, 3339, 3721, 4379
AsuII TTCGAA 2 cut(s) 1531, 3619
AsuNHI GCTAGC 2 cut(s) 728, 3227
AvaII GGWCC 8 cut(s) 110, 127, 914, 1885, 2554, 2620, 3407, 4188
AxyI CCTNAGG 1 cut(s) 1232
BaeGI GKGCMC 2 cut(s) 2008, 2098
BamHI GGATCC 1 cut(s) 1724
BanI GGYRCC 5 cut(s) 1100, 2833, 3860, 3908, 3919
BanII GRGCYC 1 cut(s) 2401
BarI GAAGNNNNNNTAC 6 cut(s) 314, 346, 704, 736, 2386, 2418
BauI CACGAG 1 cut(s) 1404
BbrPI CACGTG 1 cut(s) 1928
BbsI GAAGAC 6 cut(s) 59, 723, 1122, 2349, 2976, 4300
Bbv12I GWGCWC 3 cut(s) 1639, 2008, 2401
BceAI ACGGC 1 cut(s) 428
BcgI CGANNNNNNTGC 2 cut(s) 4454, 4488
BciT130I CCWGG 5 cut(s) 912, 1355, 1370, 3983, 4572
BclI TGATCA 2 cut(s) 1950, 3214
BcuI ACTAGT 1 cut(s) 134
BfmI CTRYAG 6 cut(s) 682, 924, 1170, 2331, 2469, 2475
BfoI RGCGCY 2 cut(s) 1351, 1412
BfrI CTTAAG 1 cut(s) 935
BfuAI ACCTGC 4 cut(s) 1528, 2338, 2722, 4384
BmcAI AGTACT 1 cut(s) 332
Bme1390I CCNGG 5 cut(s) 912, 1355, 1370, 3983, 4572
Bme18I GGWCC 8 cut(s) 110, 127, 914, 1885, 2554, 2620, 3407, 4188
BmgBI CACGTC 1 cut(s) 3433
BmgT120I GGNCC 9 cut(s) 110, 127, 914, 1885, 2554, 2620, 3407, 4188, 4227
BmrFI CCNGG 5 cut(s) 912, 1355, 1370, 3983, 4572
BmtI GCTAGC 2 cut(s) 732, 3231
BpiI GAAGAC 6 cut(s) 59, 723, 1122, 2349, 2976, 4300
BplI GAGNNNNNCTC 2 cut(s) 2066, 2098
Bpu14I TTCGAA 2 cut(s) 1531, 3619
BpuEI CTTGAG 3 cut(s) 1216, 1881, 3089
Bsa29I ATCGAT 2 cut(s) 1903, 4464
BsaAI YACGTR 1 cut(s) 1928
BsaBI GATNNNNATC 2 cut(s) 1272, 4140
BsaHI GRCGYC 1 cut(s) 2354
BsaI GGTCTC 2 cut(s) 471, 4266
BsaJI CCNNGG 5 cut(s) 1674, 3982, 4218, 4287, 4439
BsaXI ACNNNNNCTCC 6 cut(s) 146, 176, 418, 448, 1292, 1322
Bse1I ACTGG 7 cut(s) 291, 433, 1340, 1874, 2622, 2772, 3062
Bse21I CCTNAGG 1 cut(s) 1232
Bse3DI GCAATG 4 cut(s) 723, 3490, 4165, 4213
Bse8I GATNNNNATC 2 cut(s) 1272, 4140
BseBI CCWGG 5 cut(s) 912, 1355, 1370, 3983, 4572
BseCI ATCGAT 2 cut(s) 1903, 4464
BseDI CCNNGG 5 cut(s) 1674, 3982, 4218, 4287, 4439
BseJI GATNNNNATC 2 cut(s) 1272, 4140
BseMI GCAATG 4 cut(s) 723, 3490, 4165, 4213
BseMII CTCAG 9 cut(s) 150, 389, 1664, 2133, 2600, 2646, 2706, 4164, 4380
BseNI ACTGG 7 cut(s) 291, 433, 1340, 1874, 2622, 2772, 3062
BseRI GAGGAG 5 cut(s) 426, 1154, 1300, 1754, 2615
BseSI GKGCMC 2 cut(s) 2008, 2098
BsgI GTGCAG 4 cut(s) 3050, 3864, 3912, 4404
BshFI GGCC 2 cut(s) 4229, 4587
BshNI GGYRCC 5 cut(s) 1100, 2833, 3860, 3908, 3919
BshVI ATCGAT 2 cut(s) 1903, 4464
BsiHKAI GWGCWC 3 cut(s) 1639, 2008, 2401
BslFI GGGAC 2 cut(s) 113, 2567
BsmFI GGGAC 2 cut(s) 113, 2567
BsmI GAATGC 1 cut(s) 3627
BsnI GGCC 2 cut(s) 4229, 4587
Bso31I GGTCTC 2 cut(s) 471, 4266
Bsp119I TTCGAA 2 cut(s) 1531, 3619
Bsp1286I GDGCHC 4 cut(s) 1639, 2008, 2098, 2401
Bsp1407I TGTACA 1 cut(s) 3394
Bsp19I CCATGG 1 cut(s) 4218
BspANI GGCC 2 cut(s) 4229, 4587
BspCNI CTCAG 9 cut(s) 151, 388, 1663, 2134, 2599, 2647, 2707, 4165, 4381
BspDI ATCGAT 2 cut(s) 1903, 4464
BspHI TCATGA 3 cut(s) 60, 2983, 3166
BspMAI CTGCAG 5 cut(s) 928, 1174, 2335, 2473, 2479
BspMI ACCTGC 4 cut(s) 1528, 2338, 2722, 4384
BspOI GCTAGC 2 cut(s) 732, 3231
BspPI GGATC 6 cut(s) 1719, 1732, 2375, 2837, 3171, 3586
BspQI GCTCTTC 2 cut(s) 2389, 3597
BspT104I TTCGAA 2 cut(s) 1531, 3619
BspT107I GGYRCC 5 cut(s) 1100, 2833, 3860, 3908, 3919
BspTI CTTAAG 1 cut(s) 935
BspTNI GGTCTC 2 cut(s) 471, 4266
BsrDI GCAATG 4 cut(s) 723, 3490, 4165, 4213
BsrGI TGTACA 1 cut(s) 3394
BsrI ACTGG 7 cut(s) 291, 433, 1340, 1874, 2622, 2772, 3062
BssECI CCNNGG 5 cut(s) 1674, 3982, 4218, 4287, 4439
BssNI GRCGYC 1 cut(s) 2354
BssSI CACGAG 1 cut(s) 1404
BssT1I CCWWGG 2 cut(s) 1674, 4218
Bst2BI CACGAG 1 cut(s) 1404
Bst2UI CCWGG 5 cut(s) 912, 1355, 1370, 3983, 4572
Bst6I CTCTTC 4 cut(s) 2389, 3066, 3071, 3597
BstACI GRCGYC 1 cut(s) 2354
BstAFI CTTAAG 1 cut(s) 935
BstAPI GCANNNNNTGC 2 cut(s) 752, 1178
BstAUI TGTACA 1 cut(s) 3394
BstBAI YACGTR 1 cut(s) 1928
BstBI TTCGAA 2 cut(s) 1531, 3619
BstDSI CCRYGG 2 cut(s) 4218, 4287
BstEII GGTNACC 1 cut(s) 2992
BstENI CCTNNNNNAGG 3 cut(s) 1985, 2388, 2931
BstH2I RGCGCY 2 cut(s) 1351, 1412
BstHHI GCGC 4 cut(s) 222, 417, 1350, 1411
BstNI CCWGG 5 cut(s) 912, 1355, 1370, 3983, 4572
BstNSI RCATGY 5 cut(s) 93, 674, 1169, 1306, 2189
BstPI GGTNACC 1 cut(s) 2992
BstSCI CCNGG 5 cut(s) 910, 1353, 1368, 3981, 4570
BstSFI CTRYAG 6 cut(s) 682, 924, 1170, 2331, 2469, 2475
BstSLI GKGCMC 2 cut(s) 2008, 2098
BstV2I GAAGAC 6 cut(s) 59, 723, 1122, 2349, 2976, 4300
BstX2I RGATCY 2 cut(s) 1724, 3578
BstXI CCANNNNNNTGG 2 cut(s) 1916, 3357
BstYI RGATCY 2 cut(s) 1724, 3578
Bsu15I ATCGAT 2 cut(s) 1903, 4464
Bsu36I CCTNAGG 1 cut(s) 1232
BsuRI GGCC 2 cut(s) 4229, 4587
BsuTUI ATCGAT 2 cut(s) 1903, 4464
BtgI CCRYGG 2 cut(s) 4218, 4287
BtgZI GCGATG 1 cut(s) 1067
BtrI CACGTC 1 cut(s) 3433
BtsI GCAGTG 2 cut(s) 2583, 3681
BtsIMutI CAGTG 7 cut(s) 1347, 1845, 2043, 2583, 3681, 3881, 4362
BveI ACCTGC 4 cut(s) 1528, 2338, 2722, 4384
CaiI CAGNNNCTG 1 cut(s) 1847
CciI TCATGA 3 cut(s) 60, 2983, 3166
CfoI GCGC 4 cut(s) 222, 417, 1350, 1411
Cfr13I GGNCC 9 cut(s) 110, 127, 914, 1885, 2554, 2620, 3407, 4188, 4227
ClaI ATCGAT 2 cut(s) 1903, 4464
CseI GACGC 1 cut(s) 2343
CsiI ACCWGGT 1 cut(s) 1368
DraI TTTAAA 3 cut(s) 630, 2887, 4080
Eam1104I CTCTTC 4 cut(s) 2389, 3066, 3071, 3597
EarI CTCTTC 4 cut(s) 2389, 3066, 3071, 3597
EciI GGCGGA 1 cut(s) 1722
Ecl136II GAGCTC 1 cut(s) 2399
Eco130I CCWWGG 2 cut(s) 1674, 4218
Eco147I AGGCCT 1 cut(s) 4587
Eco24I GRGCYC 1 cut(s) 2401
Eco31I GGTCTC 2 cut(s) 471, 4266
Eco32I GATATC 2 cut(s) 3476, 4255
Eco47I GGWCC 8 cut(s) 110, 127, 914, 1885, 2554, 2620, 3407, 4188
Eco47III AGCGCT 1 cut(s) 1349
Eco53kI GAGCTC 1 cut(s) 2399
Eco57I CTGAAG 6 cut(s) 873, 2003, 2807, 2915, 3072, 4152
Eco72I CACGTG 1 cut(s) 1928
Eco81I CCTNAGG 1 cut(s) 1232
Eco91I GGTNACC 1 cut(s) 2992
EcoICRI GAGCTC 1 cut(s) 2399
EcoNI CCTNNNNNAGG 3 cut(s) 1985, 2388, 2931
EcoO109I RGGNCCY 2 cut(s) 110, 2554
EcoO65I GGTNACC 1 cut(s) 2992
EcoRI GAATTC 5 cut(s) 512, 979, 1189, 2048, 3282
EcoRII CCWGG 5 cut(s) 910, 1353, 1368, 3981, 4570
EcoRV GATATC 2 cut(s) 3476, 4255
EcoT14I CCWWGG 2 cut(s) 1674, 4218
EcoT22I ATGCAT 2 cut(s) 272, 477
EcoT38I GRGCYC 1 cut(s) 2401
ErhI CCWWGG 2 cut(s) 1674, 4218
FalI AAGNNNNNCTT 4 cut(s) 567, 599, 735, 767
FaqI GGGAC 2 cut(s) 113, 2567
FauI CCCGC 1 cut(s) 1405
FbaI TGATCA 2 cut(s) 1950, 3214
FblI GTMKAC 4 cut(s) 685, 930, 3113, 3536
FriOI GRGCYC 1 cut(s) 2401
GlaI GCGC 4 cut(s) 221, 416, 1349, 1410
HaeII RGCGCY 2 cut(s) 1351, 1412
HaeIII GGCC 2 cut(s) 4229, 4587
HgaI GACGC 1 cut(s) 2343
HhaI GCGC 4 cut(s) 222, 417, 1350, 1411
Hin1I GRCGYC 1 cut(s) 2354
Hin6I GCGC 4 cut(s) 220, 415, 1348, 1409
HinP1I GCGC 4 cut(s) 220, 415, 1348, 1409
HincII GTYRAC 3 cut(s) 426, 1803, 3568
HindII GTYRAC 3 cut(s) 426, 1803, 3568
HindIII AAGCTT 3 cut(s) 1316, 1378, 2060
HpaI GTTAAC 2 cut(s) 426, 3568
HphI GGTGA 9 cut(s) 1329, 1488, 1500, 2390, 2825, 3006, 3339, 3721, 4379
Hpy99I CGWCG 2 cut(s) 38, 627
HpyCH4IV ACGT 8 cut(s) 1927, 2512, 3019, 3040, 3432, 3633, 3823, 4566
HpySE526I ACGT 8 cut(s) 1927, 2512, 3019, 3040, 3432, 3633, 3823, 4566
Hsp92I GRCGYC 1 cut(s) 2354
HspAI GCGC 4 cut(s) 220, 415, 1348, 1409
KflI GGGWCCC 1 cut(s) 2554
KpnI GGTACC 4 cut(s) 1104, 3864, 3912, 3923
Ksp22I TGATCA 2 cut(s) 1950, 3214
KspAI GTTAAC 2 cut(s) 426, 3568
LguI GCTCTTC 2 cut(s) 2389, 3597
LmnI GCTCC 9 cut(s) 737, 1036, 1237, 1345, 2074, 3136, 3417, 4040, 4360
MabI ACCWGGT 1 cut(s) 1368
MaeII ACGT 8 cut(s) 1927, 2512, 3019, 3040, 3432, 3633, 3823, 4566
MfeI CAATTG 7 cut(s) 66, 840, 878, 1524, 2838, 3999, 4601
MflI RGATCY 2 cut(s) 1724, 3578
MhlI GDGCHC 4 cut(s) 1639, 2008, 2098, 2401
MlyI GAGTC 4 cut(s) 382, 681, 2966, 3191
MmeI TCCRAC 2 cut(s) 3816, 3996
Mph1103I ATGCAT 2 cut(s) 272, 477
MroXI GAANNNNTTC 5 cut(s) 1119, 3677, 4181, 4351, 4566
MslI CAYNNNNRTG 8 cut(s) 669, 1420, 1652, 1709, 3158, 3266, 3402, 3495
MspA1I CMGCKG 4 cut(s) 1762, 2474, 3452, 3926
MspCI CTTAAG 1 cut(s) 935
MspR9I CCNGG 5 cut(s) 912, 1355, 1370, 3983, 4572
MunI CAATTG 7 cut(s) 66, 840, 878, 1524, 2838, 3999, 4601
Mva1269I GAATGC 1 cut(s) 3627
MvaI CCWGG 5 cut(s) 912, 1355, 1370, 3983, 4572
NcoI CCATGG 1 cut(s) 4218
NheI GCTAGC 2 cut(s) 728, 3227
NmuCI GTSAC 9 cut(s) 1277, 1494, 1628, 1865, 3363, 3428, 3601, 3709, 3953
NsiI ATGCAT 2 cut(s) 272, 477
NspI RCATGY 5 cut(s) 93, 674, 1169, 1306, 2189
NspV TTCGAA 2 cut(s) 1531, 3619
PaeI GCATGC 1 cut(s) 2189
PagI TCATGA 3 cut(s) 60, 2983, 3166
PceI AGGCCT 1 cut(s) 4587
PciSI GCTCTTC 2 cut(s) 2389, 3597
PcsI WCGNNNNNNNCGW 4 cut(s) 631, 1909, 3639, 4241
PctI GAATGC 1 cut(s) 3627
PdmI GAANNNNTTC 5 cut(s) 1119, 3677, 4181, 4351, 4566
PflFI GACNNNGTC 1 cut(s) 3965
PflMI CCANNNNNTGG 1 cut(s) 4224
PfoI TCCNGGA 1 cut(s) 1353
PleI GAGTC 4 cut(s) 382, 681, 2966, 3190
PmaCI CACGTG 1 cut(s) 1928
PmlI CACGTG 1 cut(s) 1928
PpsI GAGTC 4 cut(s) 382, 681, 2966, 3190
Ppu21I YACGTR 1 cut(s) 1928
PpuMI RGGWCCY 2 cut(s) 110, 2554
PshBI ATTAAT 1 cut(s) 1053
PsiI TTATAA 2 cut(s) 788, 1470
Psp124BI GAGCTC 1 cut(s) 2401
Psp1406I AACGTT 1 cut(s) 3633
Psp5II RGGWCCY 2 cut(s) 110, 2554
Psp6I CCWGG 5 cut(s) 910, 1353, 1368, 3981, 4570
PspCI CACGTG 1 cut(s) 1928
PspEI GGTNACC 1 cut(s) 2992
PspGI CCWGG 5 cut(s) 910, 1353, 1368, 3981, 4570
PspPI GGNCC 9 cut(s) 110, 127, 914, 1885, 2554, 2620, 3407, 4188, 4227
PspPPI RGGWCCY 2 cut(s) 110, 2554
PstI CTGCAG 5 cut(s) 928, 1174, 2335, 2473, 2479
PstNI CAGNNNCTG 1 cut(s) 1847
PsuI RGATCY 2 cut(s) 1724, 3578
PsyI GACNNNGTC 1 cut(s) 3965
PvuII CAGCTG 2 cut(s) 2474, 3926
RseI CAYNNNNRTG 8 cut(s) 669, 1420, 1652, 1709, 3158, 3266, 3402, 3495
SacI GAGCTC 1 cut(s) 2401
SapI GCTCTTC 2 cut(s) 2389, 3597
Sau96I GGNCC 9 cut(s) 110, 127, 914, 1885, 2554, 2620, 3407, 4188, 4227
ScaI AGTACT 1 cut(s) 332
SchI GAGTC 4 cut(s) 382, 681, 2966, 3191
ScrFI CCNGG 5 cut(s) 912, 1355, 1370, 3983, 4572
SduI GDGCHC 4 cut(s) 1639, 2008, 2098, 2401
SexAI ACCWGGT 1 cut(s) 1368
SfcI CTRYAG 6 cut(s) 682, 924, 1170, 2331, 2469, 2475
SfuI TTCGAA 2 cut(s) 1531, 3619
SinI GGWCC 8 cut(s) 110, 127, 914, 1885, 2554, 2620, 3407, 4188
SmiI ATTTAAAT 1 cut(s) 2887
SmiMI CAYNNNNRTG 8 cut(s) 669, 1420, 1652, 1709, 3158, 3266, 3402, 3495
SmlI CTYRAG 4 cut(s) 935, 1195, 1896, 3104
SmoI CTYRAG 4 cut(s) 935, 1195, 1896, 3104
SpeI ACTAGT 1 cut(s) 134
SphI GCATGC 1 cut(s) 2189
SseBI AGGCCT 1 cut(s) 4587
SspI AATATT 4 cut(s) 1108, 1644, 1939, 3616
SstI GAGCTC 1 cut(s) 2401
StuI AGGCCT 1 cut(s) 4587
StyD4I CCNGG 5 cut(s) 910, 1353, 1368, 3981, 4570
StyI CCWWGG 2 cut(s) 1674, 4218
SwaI ATTTAAAT 1 cut(s) 2887
TaiI ACGT 8 cut(s) 1930, 2515, 3022, 3043, 3435, 3636, 3826, 4569
TaqI TCGA 7 cut(s) 1531, 1903, 2870, 3619, 4337, 4464, 4590
TaqII GACCGA 1 cut(s) 4254
TatI WGTACW 2 cut(s) 330, 3394
TauI GCSGC 4 cut(s) 1403, 2465, 3641, 3878
TscAI CASTG 7 cut(s) 1347, 1852, 2050, 2583, 3688, 3888, 4362
TseFI GTSAC 9 cut(s) 1277, 1494, 1628, 1865, 3363, 3428, 3601, 3709, 3953
Tsp45I GTSAC 9 cut(s) 1277, 1494, 1628, 1865, 3363, 3428, 3601, 3709, 3953
TspGWI ACGGA 4 cut(s) 611, 3023, 3149, 4309
TspRI CASTG 7 cut(s) 1347, 1852, 2050, 2583, 3688, 3888, 4362
Tth111I GACNNNGTC 1 cut(s) 3965
Van91I CCANNNNNTGG 1 cut(s) 4224
Vha464I CTTAAG 1 cut(s) 935
VneI GTGCAC 1 cut(s) 2004
VpaK11BI GGWCC 8 cut(s) 110, 127, 914, 1885, 2554, 2620, 3407, 4188
VspI ATTAAT 1 cut(s) 1053
XagI CCTNNNNNAGG 3 cut(s) 1985, 2388, 2931
XbaI TCTAGA 2 cut(s) 2542, 3329
XceI RCATGY 5 cut(s) 93, 674, 1169, 1306, 2189
XcmI CCANNNNNNNNNTGG 2 cut(s) 1422, 2278
XmiI GTMKAC 4 cut(s) 685, 930, 3113, 3536
XmnI GAANNNNTTC 5 cut(s) 1119, 3677, 4181, 4351, 4566
ZrmI AGTACT 1 cut(s) 332
Zsp2I ATGCAT 2 cut(s) 272, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.