Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006278

Physical Location & Seq

Genomic Coordinates Reverse (-)

21907001 .. 21911564

Gene Structure 4564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCTCTGTTAATAAATAGCCTGCTAGTCCTACCCGCGCAACAACTCGGTCTGAGTCGAACTCACTCCGCTGCTACGAGTTATCTCAACTATTCACATCGCTGCAGAGCAACATCCTCCGTTTCGCTTCGGTTCTGTCATGGGAACCGAAAAGTCAAGACCAAAGCCTCCAACGCAGATAACCAAGAAGTCAAATTGGAAGAGAAAAATGAGGAGGAGGAAGGAGAAGAAGAATTTCGGGTACTGACGGCCATGAAAAGCGGTTTCAACGACATTGTGATCGTCGACACTCCGAAATCGAGAATGCTGCTACTCGATTCTTCTCATAATGTGCATAGCATTGTTTACAAGGACCAGAAGTGGACTGCTTCCTACTGGGATGAGTTTGCTAGCTTGCCTGCTATTGTTCCGAAAGGTCCTATTGCCATCCTTGGTTTGGGTGGTGGAACAGCTGCTCATTTGATGCTCGACTTGTGGCCGTCATTGCAGCTTGAAGGTTGGGAAATTGATCAAATTTTGATTGATAAAGCAAGAGAATATCTTGGGCTGTCTGATCTTGAGAAGCATACTCAAGCTGGTGGCACACTTAACATTCATATTGGCGATGCCCTTTCTCCTTCAGTTAATATTCCTGGAGGATATGCTGGCATTGTCGTTGACTTGTTTTCTGATGGAAATGTTTTGTCACAGTTGCAAGAGGTTACAACTTGGTTGGAAATAAAGAATAAATTGATGCCGAATGGGCGCCTAATGGTGAATTGTGGTGGCATAGATGAAGCATCTGATGTCAGAAAGGAAGCAGCTCATCCAAAACATATATCCACCGATGAAAGTTGGCTACAAAATTCTACTATCAAGGCATTATCTAAAGCATTCCCTGGACAAGTTAGCTGGAAGAAAATGCCACAAACTTTTGGTGAAAATTATCTTGCACTTACGGGACCTTTGCCAGAGGTGACTTCATGGTCTGCTGCAGTAACAGGTCCATTGACAGACAGTGTGAAACAATGGAGACCATGCGAACCTTGTTCTTGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

347

Amino Acids

38.12

Weight (kDa)

5.83

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44590 AT5G44590 AT5G44600
fragaria_vesca	FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540
malus_domestica	MD00G1085200.v1.1 MD10G1220900.v1.1
prunus_persica	Prupe.4G123600_v2.0.a1 Prupe.4G123600_v2.0.a1
pyrus_communis	pycom05g21780 pycom10g18660
rosa_chinensis	RchiOBHm_Chr5g0022501
rosa_laevigata	RLG00000032666
rosa_multiflora	Rmu_sc0011329.1_g000005
rosa_roxburghii	Rroxscaffold_1G00056540
rosa_rugosa	Rorug05G0074300 Rorug05G0074300
rosa_samantha	Rh5AG161100 Rh5BG160100 Rh5CG174400 Rh5DG160700
rosa_wichuraiana	Rw5G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	964
AccB1I	GGYRCC	1 cut(s)	744
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	1 cut(s)	38
AciI	CCGC	3 cut(s)	36, 69, 261
AcoI	YGGCCR	2 cut(s)	249, 476
AcsI	RAATTY	3 cut(s)	233, 513, 844
AcuI	CTGAAG	1 cut(s)	603
AcyI	GRCGYC	1 cut(s)	745
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	268, 494
AjnI	CCWGG	2 cut(s)	631, 877
AluBI	AGCT	6 cut(s)	393, 452, 490, 575, 803, 891
AluI	AGCT	6 cut(s)	393, 452, 490, 575, 803, 891
Alw26I	GTCTC	1 cut(s)	1006
AoxI	GGCC	2 cut(s)	249, 476
ApeKI	GCWGC	7 cut(s)	71, 102, 307, 452, 487, 800, 971
ApoI	RAATTY	3 cut(s)	233, 513, 844
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	2 cut(s)	40, 747
AspS9I	GGNCC	4 cut(s)	352, 416, 941, 983
AsuHPI	GGTGA	3 cut(s)	766, 929, 967
AsuNHI	GCTAGC	1 cut(s)	389
AvaII	GGWCC	4 cut(s)	352, 416, 941, 983
BanI	GGYRCC	1 cut(s)	744
BbvI	GCAGC	7 cut(s)	58, 89, 294, 439, 499, 812, 958
BccI	CCATC	2 cut(s)	434, 665
BceAI	ACGGC	2 cut(s)	264, 463
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BciT130I	CCWGG	2 cut(s)	633, 879
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	1 cut(s)	1006
BfaI	CTAG	2 cut(s)	26, 390
BfmI	CTRYAG	2 cut(s)	103, 972
BfoI	RGCGCY	1 cut(s)	748
BglI	GCCNNNNNGGC	1 cut(s)	742
BisI	GCNGC	7 cut(s)	72, 103, 308, 453, 488, 801, 972
BlsI	GCNGC	7 cut(s)	73, 104, 309, 454, 489, 802, 973
Bme1390I	CCNGG	2 cut(s)	633, 879
Bme18I	GGWCC	4 cut(s)	352, 416, 941, 983
BmgT120I	GGNCC	4 cut(s)	352, 416, 941, 983
BmiI	GGNNCC	3 cut(s)	146, 746, 942
BmrFI	CCNGG	2 cut(s)	633, 879
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	4 cut(s)	453, 595, 723, 788
BmtI	GCTAGC	1 cut(s)	393
BmuI	ACTGGG	1 cut(s)	385
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpmI	CTGGAG	1 cut(s)	654
BpuEI	CTTGAG	2 cut(s)	555, 578
BsaHI	GRCGYC	1 cut(s)	745
BsaI	GGTCTC	1 cut(s)	1006
BsaJI	CCNNGG	2 cut(s)	430, 877
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	482
BseBI	CCWGG	2 cut(s)	633, 879
BseDI	CCNNGG	2 cut(s)	430, 877
BseGI	GGATG	4 cut(s)	113, 385, 426, 805
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	1 cut(s)	482
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	2 cut(s)	227, 230
BseXI	GCAGC	7 cut(s)	58, 89, 294, 439, 499, 812, 958
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	251, 478
BshNI	GGYRCC	1 cut(s)	744
BslFI	GGGAC	1 cut(s)	954
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	1 cut(s)	1006
BsmFI	GGGAC	1 cut(s)	954
BsmI	GAATGC	2 cut(s)	309, 872
BsnI	GGCC	2 cut(s)	251, 478
Bso31I	GGTCTC	1 cut(s)	1006
Bsp143I	GATC	3 cut(s)	279, 508, 553
BspACI	CCGC	3 cut(s)	36, 69, 261
BspANI	GGCC	2 cut(s)	251, 478
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	3 cut(s)	146, 746, 942
BspMAI	CTGCAG	2 cut(s)	107, 976
BspOI	GCTAGC	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	744
BspTNI	GGTCTC	1 cut(s)	1006
BsrDI	GCAATG	1 cut(s)	482
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	2 cut(s)	430, 877
BssMI	GATC	3 cut(s)	279, 508, 553
BssNI	GRCGYC	1 cut(s)	745
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	2 cut(s)	633, 879
Bst4CI	ACNGT	2 cut(s)	690, 998
Bst6I	CTCTTC	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	745
BstC8I	GCNNGC	5 cut(s)	23, 391, 395, 399, 646
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	4 cut(s)	113, 385, 426, 805
BstFNI	CGCG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	748
BstHHI	GCGC	2 cut(s)	40, 747
BstKTI	GATC	3 cut(s)	282, 511, 556
BstMAI	GTCTC	1 cut(s)	1006
BstMBI	GATC	3 cut(s)	279, 508, 553
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 484, 742
BstNI	CCWGG	2 cut(s)	633, 879
BstSCI	CCNGG	2 cut(s)	631, 877
BstSFI	CTRYAG	2 cut(s)	103, 972
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	7 cut(s)	58, 89, 294, 439, 499, 812, 958
BsuRI	GGCC	2 cut(s)	251, 478
BtgZI	GCGATG	2 cut(s)	83, 618
BtsCI	GGATG	4 cut(s)	113, 385, 426, 805
BtsIMutI	CAGTG	1 cut(s)	1003
Cac8I	GCNNGC	5 cut(s)	23, 391, 395, 399, 646
CfoI	GCGC	2 cut(s)	40, 747
Cfr13I	GGNCC	4 cut(s)	352, 416, 941, 983
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	4 cut(s)	140, 253, 963, 1017
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	1 cut(s)	53
DinI	GGCGCC	1 cut(s)	746
DpnI	GATC	3 cut(s)	281, 510, 555
DpnII	GATC	3 cut(s)	279, 508, 553
DrdI	GACNNNNNNGTC	1 cut(s)	964
DseDI	GACNNNNNNGTC	1 cut(s)	964
EaeI	YGGCCR	2 cut(s)	249, 476
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	430
Eco31I	GGTCTC	1 cut(s)	1006
Eco47I	GGWCC	4 cut(s)	352, 416, 941, 983
Eco57I	CTGAAG	1 cut(s)	603
EcoO109I	RGGNCCY	2 cut(s)	416, 941
EcoRII	CCWGG	2 cut(s)	631, 877
EcoT14I	CCWWGG	1 cut(s)	430
EgeI	GGCGCC	1 cut(s)	746
EheI	GGCGCC	1 cut(s)	746
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	4 cut(s)	143, 256, 966, 1020
FaqI	GGGAC	1 cut(s)	954
FatI	CATG	4 cut(s)	139, 252, 962, 1016
FauI	CCCGC	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	7 cut(s)	72, 103, 308, 453, 488, 801, 972
FokI	GGATG	4 cut(s)	100, 392, 413, 792
Fsp4HI	GCNGC	7 cut(s)	72, 103, 308, 453, 488, 801, 972
FspBI	CTAG	2 cut(s)	26, 390
GlaI	GCGC	2 cut(s)	39, 746
GluI	GCNGC	7 cut(s)	72, 103, 308, 453, 488, 801, 972
GsuI	CTGGAG	1 cut(s)	654
HaeII	RGCGCY	1 cut(s)	748
HaeIII	GGCC	2 cut(s)	251, 478
HhaI	GCGC	2 cut(s)	40, 747
Hin1I	GRCGYC	1 cut(s)	745
Hin1II	CATG	4 cut(s)	143, 256, 966, 1020
Hin6I	GCGC	2 cut(s)	38, 745
HinP1I	GCGC	2 cut(s)	38, 745
HincII	GTYRAC	2 cut(s)	286, 658
HindII	GTYRAC	2 cut(s)	286, 658
HinfI	GANTC	2 cut(s)	55, 317
HphI	GGTGA	3 cut(s)	766, 929, 967
Hpy166II	GTNNAC	4 cut(s)	286, 346, 363, 658
Hpy188I	TCNGA	7 cut(s)	54, 294, 411, 553, 670, 784, 791
Hpy188III	TCNNGA	3 cut(s)	157, 300, 557
Hpy8I	GTNNAC	4 cut(s)	286, 346, 363, 658
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	3 cut(s)	215, 488, 627
HpyCH4III	ACNGT	2 cut(s)	690, 998
HpyCH4V	TGCA	6 cut(s)	105, 334, 487, 694, 932, 974
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 484, 742
HpyF3I	CTNAG	1 cut(s)	53
Hsp92I	GRCGYC	1 cut(s)	745
Hsp92II	CATG	4 cut(s)	143, 256, 966, 1020
HspAI	GCGC	2 cut(s)	38, 745
KasI	GGCGCC	1 cut(s)	744
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	3 cut(s)	279, 508, 553
Lsp1109I	GCAGC	7 cut(s)	58, 89, 294, 439, 499, 812, 958
LweI	GCATC	4 cut(s)	453, 595, 723, 788
MaeI	CTAG	2 cut(s)	26, 390
MaeIII	GTNAC	4 cut(s)	684, 700, 955, 976
MalI	GATC	3 cut(s)	281, 510, 555
MboI	GATC	3 cut(s)	279, 508, 553
MboII	GAAGA	5 cut(s)	212, 239, 242, 312, 907
MluCI	AATT	8 cut(s)	194, 233, 504, 513, 728, 757, 844, 922
Mly113I	GGCGCC	1 cut(s)	745
MlyI	GAGTC	1 cut(s)	64
MmeI	TCCRAC	2 cut(s)	195, 693
MnlI	CCTC	8 cut(s)	127, 178, 205, 208, 211, 629, 691, 946
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	3 cut(s)	11, 588, 624
MspA1I	CMGCKG	2 cut(s)	71, 452
MspR9I	CCNGG	2 cut(s)	633, 879
Mva1269I	GAATGC	2 cut(s)	309, 872
MvaI	CCWGG	2 cut(s)	633, 879
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	173, 484, 742
NarI	GGCGCC	1 cut(s)	745
NdeII	GATC	3 cut(s)	279, 508, 553
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	4 cut(s)	143, 256, 966, 1020
NlaIV	GGNNCC	3 cut(s)	146, 746, 942
NmuCI	GTSAC	2 cut(s)	684, 955
PctI	GAATGC	2 cut(s)	309, 872
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	317
PfoI	TCCNGGA	1 cut(s)	631
PkrI	GCNGC	7 cut(s)	73, 104, 309, 454, 489, 802, 973
PleI	GAGTC	1 cut(s)	63
PluTI	GGCGCC	1 cut(s)	748
PpsI	GAGTC	1 cut(s)	63
PpuMI	RGGWCCY	2 cut(s)	416, 941
Psp5II	RGGWCCY	2 cut(s)	416, 941
Psp6I	CCWGG	2 cut(s)	631, 877
PspGI	CCWGG	2 cut(s)	631, 877
PspN4I	GGNNCC	3 cut(s)	146, 746, 942
PspPI	GGNCC	4 cut(s)	352, 416, 941, 983
PspPPI	RGGWCCY	2 cut(s)	416, 941
PstI	CTGCAG	2 cut(s)	107, 976
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SalI	GTCGAC	1 cut(s)	284
SaqAI	TTAA	3 cut(s)	11, 588, 624
SatI	GCNGC	7 cut(s)	72, 103, 308, 453, 488, 801, 972
Sau3AI	GATC	3 cut(s)	279, 508, 553
Sau96I	GGNCC	4 cut(s)	352, 416, 941, 983
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	2 cut(s)	633, 879
SfaNI	GCATC	4 cut(s)	453, 595, 723, 788
SfcI	CTRYAG	2 cut(s)	103, 972
SfoI	GGCGCC	1 cut(s)	746
SinI	GGWCC	4 cut(s)	352, 416, 941, 983
SmlI	CTYRAG	2 cut(s)	557, 570
SmoI	CTYRAG	2 cut(s)	557, 570
Sse9I	AATT	8 cut(s)	194, 233, 504, 513, 728, 757, 844, 922
SsiI	CCGC	3 cut(s)	36, 69, 261
SspDI	GGCGCC	1 cut(s)	744
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	2 cut(s)	26, 390
StyD4I	CCNGG	2 cut(s)	631, 877
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	690, 998
TaqI	TCGA	5 cut(s)	58, 285, 299, 315, 468
TaqII	GACCGA	1 cut(s)	38
TasI	AATT	8 cut(s)	194, 233, 504, 513, 728, 757, 844, 922
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	3 cut(s)	11, 588, 624
Tru9I	TTAA	3 cut(s)	11, 588, 624
TscAI	CASTG	1 cut(s)	1003
TseFI	GTSAC	2 cut(s)	684, 955
TseI	GCWGC	7 cut(s)	71, 102, 307, 452, 487, 800, 971
Tsp45I	GTSAC	2 cut(s)	684, 955
TspDTI	ATGAA	5 cut(s)	269, 584, 789, 843, 951
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	1003
VpaK11BI	GGWCC	4 cut(s)	352, 416, 941, 983
XapI	RAATTY	3 cut(s)	233, 513, 844
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XmiI	GTMKAC	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	2 cut(s)	26, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.