Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009010

Physical Location & Seq

Genomic Coordinates Forward (+)

22756868 .. 22757314

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGGAAAGCTCAACTGGGTTCTCCAAGAACGGGTCAAGAGCCTATTCGTCGAGAATCAGATATGGAGGGACATGGCACAGACAAACGAAGCTGCAGCCAATTCCCTACGCACCAATTTAGAGCAAGTCCTGGCGCACGTTAGCGACGACCACCACGCTGGTGGCAGCGGTGCCACTGCTGCCGCTGTGGCTGATGATGCCCAATCGTGCTGCGGAAGCAACGACAACGGGCGGGATATTGATGCTGTGGACAGCGGAAATGTGGCGGTTCGCGGTGGTTGTGGTGGTGGAAGTAGGATGTGTAAGAGTTGTGGGGTGAGAGAGTCGAGGGTGTTGTTGCTGCCATGCAGGCATTTGTGCTTGTGTACAATGTGTGGGTCCACCGTGCTCAATTGCCCTGTATGCAACTCTGTCATGAATGCCAGTGTGCATGTTATTTTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009739 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0030162 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

149

Amino Acids

15.6

Weight (kDa)

6.16

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	99 - 139	1.6e-09	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19700 AT5G45100 AT5G45100
fragaria_vesca	FvH4_3g12030 FvH4_3g12030
malus_domestica	MD05G1255400.v1.1 MD10G1235500.v1.1
prunus_persica	Prupe.4G108500_v2.0.a1
pyrus_communis	pycom05g23380 pycom10g19700 pycom10g19710
rosa_chinensis	RchiOBHm_Chr5g0019721
rosa_laevigata	RLG00000032464
rosa_multiflora	Rmu_ssc0000062.1_g000019
rosa_roxburghii	Rroxscaffold_1G00058390
rosa_rugosa	Rorug05G0053500
rosa_samantha	Rh5AG143800 Rh5BG142700 Rh5CG154100 Rh5CG154200 Rh5DG142800
rosa_wichuraiana	Rw5G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccII	CGCG	1 cut(s)	273
AciI	CCGC	7 cut(s)	168, 183, 213, 232, 255, 266, 273
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	129
AleI	CACNNNNGTG	1 cut(s)	159
AluBI	AGCT	2 cut(s)	10, 92
AluI	AGCT	2 cut(s)	10, 92
Alw21I	GWGCWC	1 cut(s)	390
ApeKI	GCWGC	6 cut(s)	92, 95, 165, 179, 210, 340
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	6 cut(s)	79, 107, 166, 177, 197, 327
BciT130I	CCWGG	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	93
BglI	GCCNNNNNGGC	2 cut(s)	188, 349
BisI	GCNGC	7 cut(s)	93, 96, 166, 180, 183, 211, 341
BlsI	GCNGC	7 cut(s)	94, 97, 167, 181, 184, 212, 342
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	378
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	2 cut(s)	172, 379
BmrFI	CCNGG	1 cut(s)	131
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	2 cut(s)	187, 232
BmuI	ACTGGG	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	20, 423
BseBI	CCWGG	1 cut(s)	131
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseNI	ACTGG	2 cut(s)	20, 423
BseXI	GCAGC	6 cut(s)	79, 107, 166, 177, 197, 327
Bsh1236I	CGCG	1 cut(s)	273
BshNI	GGYRCC	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp1407I	TGTACA	1 cut(s)	365
BspACI	CCGC	7 cut(s)	168, 183, 213, 232, 255, 266, 273
BspFNI	CGCG	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	172, 379
BspMAI	CTGCAG	1 cut(s)	97
BspT107I	GGYRCC	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	20, 423
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	385
BstAUI	TGTACA	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	1 cut(s)	444
BstF5I	GGATG	1 cut(s)	303
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	6 cut(s)	179, 188, 197, 216, 349, 402
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	93
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	6 cut(s)	79, 107, 166, 177, 197, 327
BstXI	CCANNNNNNTGG	2 cut(s)	158, 161
BtsCI	GGATG	1 cut(s)	303
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 430
Cac8I	GCNNGC	1 cut(s)	350
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	4 cut(s)	73, 345, 415, 431
CviJI	RGCY	5 cut(s)	10, 42, 92, 98, 191
CviKI_1	RGCY	5 cut(s)	10, 42, 92, 98, 191
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	129
FaeI	CATG	4 cut(s)	76, 348, 418, 434
FaiI	YATR	6 cut(s)	64, 74, 346, 403, 416, 432
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	4 cut(s)	72, 344, 414, 430
FauI	CCCGC	1 cut(s)	225
Fnu4HI	GCNGC	7 cut(s)	93, 96, 166, 180, 183, 211, 341
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	7 cut(s)	93, 96, 166, 180, 183, 211, 341
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	7 cut(s)	93, 96, 166, 180, 183, 211, 341
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	4 cut(s)	76, 348, 418, 434
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	2 cut(s)	55, 323
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	3 cut(s)	250, 366, 381
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	3 cut(s)	37, 52, 415
Hpy8I	GTNNAC	3 cut(s)	250, 366, 381
Hpy99I	CGWCG	2 cut(s)	53, 149
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	4 cut(s)	95, 348, 405, 430
HpyF10VI	GCNNNNNNNGC	6 cut(s)	179, 188, 197, 216, 349, 402
HpyF3I	CTNAG	1 cut(s)	444
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	76, 348, 418, 434
HspAI	GCGC	1 cut(s)	134
LpnPI	CCDG	6 cut(s)	116, 143, 144, 334, 411, 436
Lsp1109I	GCAGC	6 cut(s)	79, 107, 166, 177, 197, 327
LweI	GCATC	2 cut(s)	187, 232
MaeII	ACGT	1 cut(s)	138
MfeI	CAATTG	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	3 cut(s)	100, 115, 391
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	2 cut(s)	60, 321
MslI	CAYNNNNRTG	1 cut(s)	159
MspA1I	CMGCKG	3 cut(s)	168, 185, 255
MspR9I	CCNGG	1 cut(s)	131
MunI	CAATTG	1 cut(s)	391
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	6 cut(s)	179, 188, 197, 216, 349, 402
NlaIII	CATG	4 cut(s)	76, 348, 418, 434
NlaIV	GGNNCC	2 cut(s)	172, 379
NspI	RCATGY	1 cut(s)	434
OliI	CACNNNNGTG	1 cut(s)	159
PagI	TCATGA	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	7 cut(s)	94, 97, 167, 181, 184, 212, 342
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	172, 379
PspPI	GGNCC	1 cut(s)	378
PstI	CTGCAG	1 cut(s)	97
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
RseI	CAYNNNNRTG	1 cut(s)	159
SatI	GCNGC	7 cut(s)	93, 96, 166, 180, 183, 211, 341
Sau96I	GGNCC	1 cut(s)	378
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	3 cut(s)	12, 94, 141
SfaNI	GCATC	2 cut(s)	187, 232
SfcI	CTRYAG	1 cut(s)	93
SinI	GGWCC	1 cut(s)	378
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	3 cut(s)	100, 115, 391
SsiI	CCGC	7 cut(s)	168, 183, 213, 232, 255, 266, 273
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	51, 326
TasI	AATT	3 cut(s)	100, 115, 391
TatI	WGTACW	1 cut(s)	365
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	1 cut(s)	55
TscAI	CASTG	2 cut(s)	181, 430
TseI	GCWGC	6 cut(s)	92, 95, 165, 179, 210, 340
TspDTI	ATGAA	1 cut(s)	431
TspRI	CASTG	2 cut(s)	181, 430
VpaK11BI	GGWCC	1 cut(s)	378
XceI	RCATGY	1 cut(s)	434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.